RNA–Protein interactions for RNA: ENST00000549752.1

CCDC38-207, Transcript of coiled-coil domain containing 38, humanhuman

TSL 3

Gene CCDC38, Length 476 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-207ENST00000549752 NISCHQ9Y2I1 1504 aa25.67■■□□□ 1.7
CCDC38-207ENST00000549752 CHIC1Q5VXU3 224 aa23.83■■□□□ 1.41
CCDC38-207ENST00000549752 AEBP2Q6ZN18 517 aaPredicted RBP23.49■■□□□ 1.35
CCDC38-207ENST00000549752 CCDC180Q9P1Z9 1646 aa23.08■■□□□ 1.28
CCDC38-207ENST00000549752 ABCC9O60706 1549 aa22.63■■□□□ 1.21
CCDC38-207ENST00000549752 RB1CC1Q8TDY2 1594 aa21.78■■□□□ 1.08
CCDC38-207ENST00000549752 NACADO15069 1562 aa21.7■■□□□ 1.06
CCDC38-207ENST00000549752 DCAF8L2P0C7V8 631 aa21.5■■□□□ 1.03
CCDC38-207ENST00000549752 MYO15BQ96JP2 1530 aa21.48■■□□□ 1.03
CCDC38-207ENST00000549752 UNC13AQ9UPW8 1703 aa21.35■■□□□ 1.01
CCDC38-207ENST00000549752 ZCCHC6Q5VYS8 1495 aaKnown RBP21.32■■□□□ 1
CCDC38-207ENST00000549752 DCAF1Q9Y4B6 1507 aa21.28■■□□□ 1
CCDC38-207ENST00000549752 PABPN1Q86U42 306 aaKnown RBP eCLIP21.04■□□□□ 0.96
CCDC38-207ENST00000549752 BICRAQ9NZM4 1560 aa21.04■□□□□ 0.96
CCDC38-207ENST00000549752 SHROOM4Q9ULL8 1493 aa20.92■□□□□ 0.94
CCDC38-207ENST00000549752 SCRIBQ14160 1630 aa20.92■□□□□ 0.94
CCDC38-207ENST00000549752 PHF23Q9BUL5 403 aaPredicted RBP20.9■□□□□ 0.94
CCDC38-207ENST00000549752 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
CCDC38-207ENST00000549752 EIF4G1Q04637 1599 aaKnown RBP20.55■□□□□ 0.88
CCDC38-207ENST00000549752 CC2D2AQ9P2K1 1620 aa20.53■□□□□ 0.88
CCDC38-207ENST00000549752 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
CCDC38-207ENST00000549752 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
CCDC38-207ENST00000549752 SMARCA4P51532 1647 aa20.01■□□□□ 0.79
CCDC38-207ENST00000549752 SMARCA2P51531 1590 aa19.96■□□□□ 0.79
CCDC38-207ENST00000549752 BAZ1AQ9NRL2 1556 aaPredicted RBP19.96■□□□□ 0.79
CCDC38-207ENST00000549752 NCAPD3P42695 1498 aa19.94■□□□□ 0.78
CCDC38-207ENST00000549752 ATAD2BQ9ULI0 1458 aa19.9■□□□□ 0.78
CCDC38-207ENST00000549752 HMGXB3Q12766 1538 aa19.88■□□□□ 0.77
CCDC38-207ENST00000549752 PEG3Q9GZU2 1588 aa19.83■□□□□ 0.76
CCDC38-207ENST00000549752 PLPPR3Q6T4P5 718 aa19.79■□□□□ 0.76
CCDC38-207ENST00000549752 BAZ1BQ9UIG0 1483 aaKnown RBP19.78■□□□□ 0.76
CCDC38-207ENST00000549752 MROH2BQ7Z745 1585 aa19.74■□□□□ 0.75
CCDC38-207ENST00000549752 ERCC6Q03468 1493 aa19.6■□□□□ 0.73
CCDC38-207ENST00000549752 WIZO95785 1651 aa19.57■□□□□ 0.72
CCDC38-207ENST00000549752 LAMC3Q9Y6N6 1575 aa19.55■□□□□ 0.72
CCDC38-207ENST00000549752 CUX2O14529 1486 aa19.5■□□□□ 0.71
CCDC38-207ENST00000549752 NESP48681 1621 aa19.48■□□□□ 0.71
CCDC38-207ENST00000549752 RSF1Q96T23 1441 aaPredicted RBP19.41■□□□□ 0.7
CCDC38-207ENST00000549752 KIF21AQ7Z4S6 1674 aa19.39■□□□□ 0.69
CCDC38-207ENST00000549752 PDS5BQ9NTI5 1447 aa19.38■□□□□ 0.69
CCDC38-207ENST00000549752 TOP2AP11388 1531 aaKnown RBP19.35■□□□□ 0.69
CCDC38-207ENST00000549752 CADPSQ9ULU8 1353 aa19.34■□□□□ 0.69
CCDC38-207ENST00000549752 THOC2Q8NI27 1593 aaKnown RBP19.33■□□□□ 0.69
CCDC38-207ENST00000549752 PRDM2Q13029 1718 aa19.23■□□□□ 0.67
CCDC38-207ENST00000549752 CFTRP13569 1480 aa19.18■□□□□ 0.66
CCDC38-207ENST00000549752 MRC2Q9UBG0 1479 aa19.17■□□□□ 0.66
CCDC38-207ENST00000549752 CEP164Q9UPV0 1460 aa19.16■□□□□ 0.66
CCDC38-207ENST00000549752 FANCD2Q9BXW9 1451 aa19.13■□□□□ 0.65
CCDC38-207ENST00000549752 WDR62O43379 1518 aa19.13■□□□□ 0.65
CCDC38-207ENST00000549752 DNAJC5Q9H3Z4 198 aa19.11■□□□□ 0.65
CCDC38-207ENST00000549752 CCDC88BA6NC98 1476 aa19.07■□□□□ 0.64
CCDC38-207ENST00000549752 URB2Q14146 1524 aaKnown RBP18.92■□□□□ 0.62
CCDC38-207ENST00000549752 ABCC8Q09428 1581 aa18.89■□□□□ 0.61
CCDC38-207ENST00000549752 DNMBPQ6XZF7 1577 aa18.81■□□□□ 0.6
CCDC38-207ENST00000549752 TOPBP1Q92547 1522 aa18.8■□□□□ 0.6
CCDC38-207ENST00000549752 IFT140Q96RY7 1462 aa18.77■□□□□ 0.6
CCDC38-207ENST00000549752 SUPT5HO00267 1087 aaKnown RBP18.71■□□□□ 0.59
CCDC38-207ENST00000549752 TARBP1Q13395 1621 aaKnown RBP18.64■□□□□ 0.57
CCDC38-207ENST00000549752 EIF4G3O43432 1585 aaKnown RBP18.64■□□□□ 0.57
CCDC38-207ENST00000549752 ZNF608Q9ULD9 1512 aaPredicted RBP18.62■□□□□ 0.57
CCDC38-207ENST00000549752 OSCARQ8IYS5 282 aa18.61■□□□□ 0.57
CCDC38-207ENST00000549752 POLA1P09884 1462 aaPredicted RBP18.6■□□□□ 0.57
CCDC38-207ENST00000549752 WDR97A6NE52 1622 aa18.58■□□□□ 0.56
CCDC38-207ENST00000549752 CUX1P39880 1505 aa18.54■□□□□ 0.56
CCDC38-207ENST00000549752 SOGA1O94964 1423 aa18.54■□□□□ 0.56
CCDC38-207ENST00000549752 FGD5Q6ZNL6 1462 aa18.53■□□□□ 0.56
CCDC38-207ENST00000549752 CHD1O14646 1710 aa18.51■□□□□ 0.55
CCDC38-207ENST00000549752 AQRO60306 1485 aaKnown RBP eCLIP18.49■□□□□ 0.55
CCDC38-207ENST00000549752 RAD54L2Q9Y4B4 1467 aa18.49■□□□□ 0.55
CCDC38-207ENST00000549752 BIVM-ERCC5R4GMW8 1640 aa18.42■□□□□ 0.54
CCDC38-207ENST00000549752 PBRM1Q86U86 1689 aa18.42■□□□□ 0.54
CCDC38-207ENST00000549752 TDRD9Q8NDG6 1382 aaKnown RBP18.42■□□□□ 0.54
CCDC38-207ENST00000549752 TOP2BQ02880 1626 aa18.39■□□□□ 0.53
CCDC38-207ENST00000549752 MAGI1Q96QZ7 1491 aaPredicted RBP18.39■□□□□ 0.53
CCDC38-207ENST00000549752 GRIN2BQ13224 1484 aa18.38■□□□□ 0.53
CCDC38-207ENST00000549752 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
CCDC38-207ENST00000549752 RIMBP3CA6NJZ7 1639 aa18.37■□□□□ 0.53
CCDC38-207ENST00000549752 RIMBP3BA6NNM3 1639 aa18.37■□□□□ 0.53
CCDC38-207ENST00000549752 RIMBP3Q9UFD9 1639 aa18.37■□□□□ 0.53
CCDC38-207ENST00000549752 FOXD1Q16676 465 aa18.36■□□□□ 0.53
CCDC38-207ENST00000549752 SNAPC4Q5SXM2 1469 aa18.35■□□□□ 0.53
CCDC38-207ENST00000549752 WRNQ14191 1432 aaPredicted RBP eCLIP18.35■□□□□ 0.53
CCDC38-207ENST00000549752 FBLN2P98095 1184 aa18.35■□□□□ 0.53
CCDC38-207ENST00000549752 TRIM41Q8WV44 630 aa18.35■□□□□ 0.53
CCDC38-207ENST00000549752 GAPVD1Q14C86 1478 aa18.34■□□□□ 0.53
CCDC38-207ENST00000549752 ABCA5Q8WWZ7 1642 aa18.34■□□□□ 0.53
CCDC38-207ENST00000549752 SYNJ1O43426 1573 aa18.31■□□□□ 0.52
CCDC38-207ENST00000549752 ARHGEF11O15085 1522 aa18.29■□□□□ 0.52
CCDC38-207ENST00000549752 SYNJ2O15056 1496 aa18.29■□□□□ 0.52
CCDC38-207ENST00000549752 CHMP7Q8WUX9 453 aaPredicted RBP18.29■□□□□ 0.52
CCDC38-207ENST00000549752 ADRA2BP18089 450 aa18.26■□□□□ 0.51
CCDC38-207ENST00000549752 CLASP1Q7Z460 1538 aa18.22■□□□□ 0.51
CCDC38-207ENST00000549752 ERICH3Q5RHP9 1530 aa18.18■□□□□ 0.5
CCDC38-207ENST00000549752 ADAMTS12P58397 1594 aa18.17■□□□□ 0.5
CCDC38-207ENST00000549752 PPP6R1Q9UPN7 881 aa18.17■□□□□ 0.5
CCDC38-207ENST00000549752 GRIN2AQ12879 1464 aa18.13■□□□□ 0.49
CCDC38-207ENST00000549752 FHAD1B1AJZ9 1412 aa18.12■□□□□ 0.49
CCDC38-207ENST00000549752 ARAP1Q96P48 1450 aa18.1■□□□□ 0.49
CCDC38-207ENST00000549752 CYB5RLQ6IPT4 315 aa18.1■□□□□ 0.49
CCDC38-207ENST00000549752 CEP170Q5SW79 1584 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms