RNA–Protein interactions for RNA: ENST00000548173.5

PRIM1-203, Transcript of DNA primase subunit 1, humanhuman

TSL 4

Gene PRIM1, Length 590 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-203ENST00000548173 NISCHQ9Y2I1 1504 aa19.45■□□□□ 0.7
PRIM1-203ENST00000548173 AEBP2Q6ZN18 517 aaPredicted RBP18.13■□□□□ 0.49
PRIM1-203ENST00000548173 CCDC180Q9P1Z9 1646 aa17.32■□□□□ 0.36
PRIM1-203ENST00000548173 CHIC1Q5VXU3 224 aa17.16■□□□□ 0.34
PRIM1-203ENST00000548173 ABCC9O60706 1549 aa17.07■□□□□ 0.32
PRIM1-203ENST00000548173 RB1CC1Q8TDY2 1594 aa16.36■□□□□ 0.21
PRIM1-203ENST00000548173 NACADO15069 1562 aa16.33■□□□□ 0.2
PRIM1-203ENST00000548173 DCAF8L2P0C7V8 631 aa16.29■□□□□ 0.2
PRIM1-203ENST00000548173 MYO15BQ96JP2 1530 aa16.21■□□□□ 0.19
PRIM1-203ENST00000548173 ZCCHC6Q5VYS8 1495 aaKnown RBP16.17■□□□□ 0.18
PRIM1-203ENST00000548173 DCAF1Q9Y4B6 1507 aa16.09■□□□□ 0.17
PRIM1-203ENST00000548173 UNC13AQ9UPW8 1703 aa15.98■□□□□ 0.15
PRIM1-203ENST00000548173 PABPN1Q86U42 306 aaKnown RBP eCLIP15.95■□□□□ 0.14
PRIM1-203ENST00000548173 BICRAQ9NZM4 1560 aa15.89■□□□□ 0.13
PRIM1-203ENST00000548173 DNAJC5BQ9UF47 199 aa15.82■□□□□ 0.12
PRIM1-203ENST00000548173 SCRIBQ14160 1630 aa15.79■□□□□ 0.12
PRIM1-203ENST00000548173 SHROOM4Q9ULL8 1493 aa15.7■□□□□ 0.1
PRIM1-203ENST00000548173 SENP3Q9H4L4 574 aaPredicted RBP15.57■□□□□ 0.08
PRIM1-203ENST00000548173 EIF4G1Q04637 1599 aaKnown RBP15.47■□□□□ 0.07
PRIM1-203ENST00000548173 CC2D2AQ9P2K1 1620 aa15.43■□□□□ 0.06
PRIM1-203ENST00000548173 CECR2Q9BXF3 1484 aa15.35■□□□□ 0.05
PRIM1-203ENST00000548173 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
PRIM1-203ENST00000548173 SMARCA4P51532 1647 aa15.1■□□□□ 0.01
PRIM1-203ENST00000548173 NCAPD3P42695 1498 aa15.08■□□□□ 0.01
PRIM1-203ENST00000548173 ATAD2BQ9ULI0 1458 aa15.07■□□□□ 0
PRIM1-203ENST00000548173 BAZ1AQ9NRL2 1556 aaPredicted RBP15.07■□□□□ 0
PRIM1-203ENST00000548173 SMARCA2P51531 1590 aa15.02■□□□□ -0
PRIM1-203ENST00000548173 MROH2BQ7Z745 1585 aa14.99□□□□□ -0.01
PRIM1-203ENST00000548173 HMGXB3Q12766 1538 aa14.98□□□□□ -0.01
PRIM1-203ENST00000548173 PEG3Q9GZU2 1588 aa14.97□□□□□ -0.01
PRIM1-203ENST00000548173 BAZ1BQ9UIG0 1483 aaKnown RBP14.92□□□□□ -0.02
PRIM1-203ENST00000548173 WIZO95785 1651 aa14.8□□□□□ -0.04
PRIM1-203ENST00000548173 RSF1Q96T23 1441 aaPredicted RBP14.78□□□□□ -0.04
PRIM1-203ENST00000548173 NESP48681 1621 aa14.74□□□□□ -0.05
PRIM1-203ENST00000548173 ERCC6Q03468 1493 aa14.71□□□□□ -0.05
PRIM1-203ENST00000548173 LAMC3Q9Y6N6 1575 aa14.68□□□□□ -0.06
PRIM1-203ENST00000548173 TOP2AP11388 1531 aaKnown RBP14.64□□□□□ -0.07
PRIM1-203ENST00000548173 CADPSQ9ULU8 1353 aa14.63□□□□□ -0.07
PRIM1-203ENST00000548173 CUX2O14529 1486 aa14.61□□□□□ -0.07
PRIM1-203ENST00000548173 PDS5BQ9NTI5 1447 aa14.59□□□□□ -0.07
PRIM1-203ENST00000548173 KIF21AQ7Z4S6 1674 aa14.54□□□□□ -0.08
PRIM1-203ENST00000548173 THOC2Q8NI27 1593 aaKnown RBP14.53□□□□□ -0.08
PRIM1-203ENST00000548173 CFTRP13569 1480 aa14.52□□□□□ -0.08
PRIM1-203ENST00000548173 FOXD1Q16676 465 aa14.49□□□□□ -0.09
PRIM1-203ENST00000548173 CCDC88BA6NC98 1476 aa14.48□□□□□ -0.09
PRIM1-203ENST00000548173 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
PRIM1-203ENST00000548173 MRC2Q9UBG0 1479 aa14.44□□□□□ -0.1
PRIM1-203ENST00000548173 CEP164Q9UPV0 1460 aa14.44□□□□□ -0.1
PRIM1-203ENST00000548173 WDR62O43379 1518 aa14.41□□□□□ -0.1
PRIM1-203ENST00000548173 PRDM2Q13029 1718 aa14.35□□□□□ -0.11
PRIM1-203ENST00000548173 DNAJC5Q9H3Z4 198 aa14.33□□□□□ -0.12
PRIM1-203ENST00000548173 URB2Q14146 1524 aaKnown RBP14.32□□□□□ -0.12
PRIM1-203ENST00000548173 SUPT5HO00267 1087 aaKnown RBP14.31□□□□□ -0.12
PRIM1-203ENST00000548173 TOPBP1Q92547 1522 aa14.21□□□□□ -0.13
PRIM1-203ENST00000548173 ABCC8Q09428 1581 aa14.21□□□□□ -0.14
PRIM1-203ENST00000548173 DNMBPQ6XZF7 1577 aa14.17□□□□□ -0.14
PRIM1-203ENST00000548173 IFT140Q96RY7 1462 aa14.15□□□□□ -0.14
PRIM1-203ENST00000548173 ZNF608Q9ULD9 1512 aaPredicted RBP14.1□□□□□ -0.15
PRIM1-203ENST00000548173 POLA1P09884 1462 aaPredicted RBP14.09□□□□□ -0.15
PRIM1-203ENST00000548173 CUX1P39880 1505 aa14.06□□□□□ -0.16
PRIM1-203ENST00000548173 TARBP1Q13395 1621 aaKnown RBP14.06□□□□□ -0.16
PRIM1-203ENST00000548173 SOGA1O94964 1423 aa14.03□□□□□ -0.16
PRIM1-203ENST00000548173 FGD5Q6ZNL6 1462 aa14.03□□□□□ -0.16
PRIM1-203ENST00000548173 RAD54L2Q9Y4B4 1467 aa14.03□□□□□ -0.16
PRIM1-203ENST00000548173 EIF4G3O43432 1585 aaKnown RBP14.01□□□□□ -0.17
PRIM1-203ENST00000548173 AQRO60306 1485 aaKnown RBP eCLIP14.01□□□□□ -0.17
PRIM1-203ENST00000548173 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
PRIM1-203ENST00000548173 TDRD9Q8NDG6 1382 aaKnown RBP13.97□□□□□ -0.17
PRIM1-203ENST00000548173 WRNQ14191 1432 aaPredicted RBP eCLIP13.93□□□□□ -0.18
PRIM1-203ENST00000548173 WDR97A6NE52 1622 aa13.93□□□□□ -0.18
PRIM1-203ENST00000548173 TOP2BQ02880 1626 aa13.9□□□□□ -0.18
PRIM1-203ENST00000548173 BIVM-ERCC5R4GMW8 1640 aa13.9□□□□□ -0.19
PRIM1-203ENST00000548173 ABCA10Q8WWZ4 1543 aa13.9□□□□□ -0.19
PRIM1-203ENST00000548173 SYNJ1O43426 1573 aa13.89□□□□□ -0.19
PRIM1-203ENST00000548173 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
PRIM1-203ENST00000548173 SNAPC4Q5SXM2 1469 aa13.87□□□□□ -0.19
PRIM1-203ENST00000548173 GAPVD1Q14C86 1478 aa13.86□□□□□ -0.19
PRIM1-203ENST00000548173 CHD1O14646 1710 aa13.85□□□□□ -0.19
PRIM1-203ENST00000548173 FBLN2P98095 1184 aa13.85□□□□□ -0.19
PRIM1-203ENST00000548173 MAGI1Q96QZ7 1491 aaPredicted RBP13.85□□□□□ -0.19
PRIM1-203ENST00000548173 ABCA5Q8WWZ7 1642 aa13.83□□□□□ -0.2
PRIM1-203ENST00000548173 CHMP7Q8WUX9 453 aaPredicted RBP13.81□□□□□ -0.2
PRIM1-203ENST00000548173 PBRM1Q86U86 1689 aa13.8□□□□□ -0.2
PRIM1-203ENST00000548173 SYNJ2O15056 1496 aa13.8□□□□□ -0.2
PRIM1-203ENST00000548173 TRIM41Q8WV44 630 aa13.78□□□□□ -0.2
PRIM1-203ENST00000548173 RIMBP3CA6NJZ7 1639 aa13.76□□□□□ -0.21
PRIM1-203ENST00000548173 RIMBP3BA6NNM3 1639 aa13.76□□□□□ -0.21
PRIM1-203ENST00000548173 RIMBP3Q9UFD9 1639 aa13.76□□□□□ -0.21
PRIM1-203ENST00000548173 ARHGEF11O15085 1522 aa13.75□□□□□ -0.21
PRIM1-203ENST00000548173 PLPPR3Q6T4P5 718 aa13.73□□□□□ -0.21
PRIM1-203ENST00000548173 CLASP1Q7Z460 1538 aa13.73□□□□□ -0.21
PRIM1-203ENST00000548173 ERICH3Q5RHP9 1530 aa13.72□□□□□ -0.21
PRIM1-203ENST00000548173 ADAMTS12P58397 1594 aa13.71□□□□□ -0.22
PRIM1-203ENST00000548173 FHAD1B1AJZ9 1412 aa13.7□□□□□ -0.22
PRIM1-203ENST00000548173 GRIN2AQ12879 1464 aa13.69□□□□□ -0.22
PRIM1-203ENST00000548173 NUP160Q12769 1436 aa13.65□□□□□ -0.22
PRIM1-203ENST00000548173 CYB5RLQ6IPT4 315 aa13.65□□□□□ -0.22
PRIM1-203ENST00000548173 ARAP1Q96P48 1450 aa13.65□□□□□ -0.22
PRIM1-203ENST00000548173 KIF27Q86VH2 1401 aa13.64□□□□□ -0.23
PRIM1-203ENST00000548173 MSH5O43196 834 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms