RNA–Protein interactions for RNA: ENST00000547764.1

PRPF40B-206, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-206ENST00000547764 NISCHQ9Y2I1 1504 aa45.54■■■■■ 4.88
PRPF40B-206ENST00000547764 CCDC180Q9P1Z9 1646 aa40.45■■■■■ 4.07
PRPF40B-206ENST00000547764 ABCC9O60706 1549 aa39.69■■■■□ 3.94
PRPF40B-206ENST00000547764 DCAF8L2P0C7V8 631 aa38.13■■■■□ 3.69
PRPF40B-206ENST00000547764 RB1CC1Q8TDY2 1594 aa38.11■■■■□ 3.69
PRPF40B-206ENST00000547764 NACADO15069 1562 aa38.06■■■■□ 3.68
PRPF40B-206ENST00000547764 ZCCHC6Q5VYS8 1495 aaKnown RBP37.91■■■■□ 3.66
PRPF40B-206ENST00000547764 MYO15BQ96JP2 1530 aa37.82■■■■□ 3.65
PRPF40B-206ENST00000547764 DCAF1Q9Y4B6 1507 aa37.65■■■■□ 3.62
PRPF40B-206ENST00000547764 UNC13AQ9UPW8 1703 aa37.24■■■■□ 3.55
PRPF40B-206ENST00000547764 PABPN1Q86U42 306 aaKnown RBP eCLIP37.12■■■■□ 3.53
PRPF40B-206ENST00000547764 BICRAQ9NZM4 1560 aa36.99■■■■□ 3.51
PRPF40B-206ENST00000547764 SCRIBQ14160 1630 aa36.95■■■■□ 3.51
PRPF40B-206ENST00000547764 SHROOM4Q9ULL8 1493 aa36.55■■■■□ 3.44
PRPF40B-206ENST00000547764 DNAJC5BQ9UF47 199 aa36.52■■■■□ 3.44
PRPF40B-206ENST00000547764 EIF4G1Q04637 1599 aaKnown RBP36.01■■■■□ 3.35
PRPF40B-206ENST00000547764 CC2D2AQ9P2K1 1620 aa35.87■■■■□ 3.33
PRPF40B-206ENST00000547764 CECR2Q9BXF3 1484 aa35.66■■■■□ 3.3
PRPF40B-206ENST00000547764 SMARCA4P51532 1647 aa35.32■■■■□ 3.25
PRPF40B-206ENST00000547764 BAZ1AQ9NRL2 1556 aaPredicted RBP35.28■■■■□ 3.24
PRPF40B-206ENST00000547764 ATAD2BQ9ULI0 1458 aa35.17■■■■□ 3.22
PRPF40B-206ENST00000547764 NCAPD3P42695 1498 aa35.16■■■■□ 3.22
PRPF40B-206ENST00000547764 MROH2BQ7Z745 1585 aa35.11■■■■□ 3.21
PRPF40B-206ENST00000547764 SMARCA2P51531 1590 aa35.09■■■■□ 3.21
PRPF40B-206ENST00000547764 PEG3Q9GZU2 1588 aa34.98■■■■□ 3.19
PRPF40B-206ENST00000547764 HMGXB3Q12766 1538 aa34.94■■■■□ 3.18
PRPF40B-206ENST00000547764 BAZ1BQ9UIG0 1483 aaKnown RBP34.87■■■■□ 3.17
PRPF40B-206ENST00000547764 WIZO95785 1651 aa34.72■■■■□ 3.15
PRPF40B-206ENST00000547764 RSF1Q96T23 1441 aaPredicted RBP34.71■■■■□ 3.15
PRPF40B-206ENST00000547764 NESP48681 1621 aa34.33■■■■□ 3.09
PRPF40B-206ENST00000547764 TOP2AP11388 1531 aaKnown RBP34.33■■■■□ 3.09
PRPF40B-206ENST00000547764 LAMC3Q9Y6N6 1575 aa34.2■■■■□ 3.07
PRPF40B-206ENST00000547764 ERCC6Q03468 1493 aa34.2■■■■□ 3.06
PRPF40B-206ENST00000547764 CADPSQ9ULU8 1353 aa34.14■■■■□ 3.06
PRPF40B-206ENST00000547764 PDS5BQ9NTI5 1447 aa34■■■■□ 3.03
PRPF40B-206ENST00000547764 CCDC88BA6NC98 1476 aa33.96■■■■□ 3.03
PRPF40B-206ENST00000547764 CFTRP13569 1480 aa33.92■■■■□ 3.02
PRPF40B-206ENST00000547764 KIF21AQ7Z4S6 1674 aa33.89■■■■□ 3.02
PRPF40B-206ENST00000547764 SUPT5HO00267 1087 aaKnown RBP33.84■■■■□ 3.01
PRPF40B-206ENST00000547764 CUX2O14529 1486 aa33.82■■■■□ 3.01
PRPF40B-206ENST00000547764 THOC2Q8NI27 1593 aaKnown RBP33.78■■■■□ 3
PRPF40B-206ENST00000547764 FANCD2Q9BXW9 1451 aa33.74■■■□□ 2.99
PRPF40B-206ENST00000547764 CEP164Q9UPV0 1460 aa33.68■■■□□ 2.98
PRPF40B-206ENST00000547764 MRC2Q9UBG0 1479 aa33.64■■■□□ 2.98
PRPF40B-206ENST00000547764 PRDM2Q13029 1718 aa33.59■■■□□ 2.97
PRPF40B-206ENST00000547764 WDR62O43379 1518 aa33.53■■■□□ 2.96
PRPF40B-206ENST00000547764 URB2Q14146 1524 aaKnown RBP33.41■■■□□ 2.94
PRPF40B-206ENST00000547764 TOPBP1Q92547 1522 aa33.19■■■□□ 2.9
PRPF40B-206ENST00000547764 ABCC8Q09428 1581 aa33.17■■■□□ 2.9
PRPF40B-206ENST00000547764 DNMBPQ6XZF7 1577 aa33.13■■■□□ 2.89
PRPF40B-206ENST00000547764 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
PRPF40B-206ENST00000547764 CUX1P39880 1505 aa32.93■■■□□ 2.86
PRPF40B-206ENST00000547764 POLA1P09884 1462 aaPredicted RBP32.91■■■□□ 2.86
PRPF40B-206ENST00000547764 DNAJC5Q9H3Z4 198 aa32.9■■■□□ 2.86
PRPF40B-206ENST00000547764 ZNF608Q9ULD9 1512 aaPredicted RBP32.87■■■□□ 2.85
PRPF40B-206ENST00000547764 FGD5Q6ZNL6 1462 aa32.82■■■□□ 2.84
PRPF40B-206ENST00000547764 TARBP1Q13395 1621 aaKnown RBP32.81■■■□□ 2.84
PRPF40B-206ENST00000547764 RAD54L2Q9Y4B4 1467 aa32.8■■■□□ 2.84
PRPF40B-206ENST00000547764 SOGA1O94964 1423 aa32.79■■■□□ 2.84
PRPF40B-206ENST00000547764 WRNQ14191 1432 aaPredicted RBP eCLIP32.71■■■□□ 2.83
PRPF40B-206ENST00000547764 EIF4G3O43432 1585 aaKnown RBP32.7■■■□□ 2.82
PRPF40B-206ENST00000547764 AQRO60306 1485 aaKnown RBP eCLIP32.68■■■□□ 2.82
PRPF40B-206ENST00000547764 TDRD9Q8NDG6 1382 aaKnown RBP32.63■■■□□ 2.81
PRPF40B-206ENST00000547764 SYNJ1O43426 1573 aa32.62■■■□□ 2.81
PRPF40B-206ENST00000547764 TOP2BQ02880 1626 aa32.62■■■□□ 2.81
PRPF40B-206ENST00000547764 BIVM-ERCC5R4GMW8 1640 aa32.6■■■□□ 2.81
PRPF40B-206ENST00000547764 WDR97A6NE52 1622 aa32.51■■■□□ 2.8
PRPF40B-206ENST00000547764 ABCA10Q8WWZ4 1543 aa32.5■■■□□ 2.79
PRPF40B-206ENST00000547764 OSCARQ8IYS5 282 aa32.47■■■□□ 2.79
PRPF40B-206ENST00000547764 GAPVD1Q14C86 1478 aa32.4■■■□□ 2.78
PRPF40B-206ENST00000547764 GRIN2BQ13224 1484 aa32.39■■■□□ 2.78
PRPF40B-206ENST00000547764 SNAPC4Q5SXM2 1469 aa32.35■■■□□ 2.77
PRPF40B-206ENST00000547764 ABCA5Q8WWZ7 1642 aa32.35■■■□□ 2.77
PRPF40B-206ENST00000547764 FBLN2P98095 1184 aa32.32■■■□□ 2.76
PRPF40B-206ENST00000547764 MAGI1Q96QZ7 1491 aaPredicted RBP32.3■■■□□ 2.76
PRPF40B-206ENST00000547764 PBRM1Q86U86 1689 aa32.28■■■□□ 2.76
PRPF40B-206ENST00000547764 CHD1O14646 1710 aa32.28■■■□□ 2.76
PRPF40B-206ENST00000547764 CHMP7Q8WUX9 453 aaPredicted RBP32.21■■■□□ 2.75
PRPF40B-206ENST00000547764 SYNJ2O15056 1496 aa32.18■■■□□ 2.74
PRPF40B-206ENST00000547764 ERICH3Q5RHP9 1530 aa32.1■■■□□ 2.73
PRPF40B-206ENST00000547764 ADAMTS12P58397 1594 aa32.05■■■□□ 2.72
PRPF40B-206ENST00000547764 FHAD1B1AJZ9 1412 aa32.02■■■□□ 2.72
PRPF40B-206ENST00000547764 KIF27Q86VH2 1401 aa32.02■■■□□ 2.72
PRPF40B-206ENST00000547764 GRIN2AQ12879 1464 aa31.97■■■□□ 2.71
PRPF40B-206ENST00000547764 CLASP1Q7Z460 1538 aa31.95■■■□□ 2.7
PRPF40B-206ENST00000547764 TRIM41Q8WV44 630 aa31.94■■■□□ 2.7
PRPF40B-206ENST00000547764 IGF1RP08069 1367 aa31.94■■■□□ 2.7
PRPF40B-206ENST00000547764 ARHGEF11O15085 1522 aa31.91■■■□□ 2.7
PRPF40B-206ENST00000547764 RIMBP3CA6NJZ7 1639 aa31.91■■■□□ 2.7
PRPF40B-206ENST00000547764 RIMBP3BA6NNM3 1639 aa31.91■■■□□ 2.7
PRPF40B-206ENST00000547764 RIMBP3Q9UFD9 1639 aa31.91■■■□□ 2.7
PRPF40B-206ENST00000547764 NUP160Q12769 1436 aa31.83■■■□□ 2.69
PRPF40B-206ENST00000547764 CEP170Q5SW79 1584 aa31.81■■■□□ 2.68
PRPF40B-206ENST00000547764 CUL7Q14999 1698 aa31.78■■■□□ 2.68
PRPF40B-206ENST00000547764 RUSC2Q8N2Y8 1516 aa31.76■■■□□ 2.68
PRPF40B-206ENST00000547764 CARMIL1Q5VZK9 1371 aa31.73■■■□□ 2.67
PRPF40B-206ENST00000547764 CYB5RLQ6IPT4 315 aa31.67■■■□□ 2.66
PRPF40B-206ENST00000547764 ARAP1Q96P48 1450 aa31.66■■■□□ 2.66
PRPF40B-206ENST00000547764 SHROOM2Q13796 1616 aa31.58■■■□□ 2.65
PRPF40B-206ENST00000547764 CHIC1Q5VXU3 224 aa31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms