RNA–Protein interactions for RNA: ENST00000547615.1

PTCH1-214, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 525 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-214ENST00000547615 NISCHQ9Y2I1 1504 aa20.96■□□□□ 0.95
PTCH1-214ENST00000547615 CCDC180Q9P1Z9 1646 aa19.09■□□□□ 0.65
PTCH1-214ENST00000547615 ABCC9O60706 1549 aa19.08■□□□□ 0.64
PTCH1-214ENST00000547615 RB1CC1Q8TDY2 1594 aa18.25■□□□□ 0.51
PTCH1-214ENST00000547615 NACADO15069 1562 aa18.07■□□□□ 0.48
PTCH1-214ENST00000547615 DNAJC5BQ9UF47 199 aa17.95■□□□□ 0.46
PTCH1-214ENST00000547615 MYO15BQ96JP2 1530 aa17.79■□□□□ 0.44
PTCH1-214ENST00000547615 UNC13AQ9UPW8 1703 aa17.71■□□□□ 0.43
PTCH1-214ENST00000547615 DCAF8L2P0C7V8 631 aa17.64■□□□□ 0.41
PTCH1-214ENST00000547615 PABPN1Q86U42 306 aaKnown RBP eCLIP17.61■□□□□ 0.41
PTCH1-214ENST00000547615 SHROOM4Q9ULL8 1493 aa17.61■□□□□ 0.41
PTCH1-214ENST00000547615 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
PTCH1-214ENST00000547615 DCAF1Q9Y4B6 1507 aa17.42■□□□□ 0.38
PTCH1-214ENST00000547615 ZCCHC6Q5VYS8 1495 aaKnown RBP17.34■□□□□ 0.37
PTCH1-214ENST00000547615 CC2D2AQ9P2K1 1620 aa17.3■□□□□ 0.36
PTCH1-214ENST00000547615 CECR2Q9BXF3 1484 aa17.3■□□□□ 0.36
PTCH1-214ENST00000547615 EIF4G1Q04637 1599 aaKnown RBP17.23■□□□□ 0.35
PTCH1-214ENST00000547615 SCRIBQ14160 1630 aa17.18■□□□□ 0.34
PTCH1-214ENST00000547615 DNAJC5Q9H3Z4 198 aa16.87■□□□□ 0.29
PTCH1-214ENST00000547615 CUX2O14529 1486 aa16.75■□□□□ 0.27
PTCH1-214ENST00000547615 NCAPD3P42695 1498 aa16.61■□□□□ 0.25
PTCH1-214ENST00000547615 ERCC6Q03468 1493 aa16.61■□□□□ 0.25
PTCH1-214ENST00000547615 SMARCA2P51531 1590 aa16.54■□□□□ 0.24
PTCH1-214ENST00000547615 HMGXB3Q12766 1538 aa16.54■□□□□ 0.24
PTCH1-214ENST00000547615 ATAD2BQ9ULI0 1458 aa16.48■□□□□ 0.23
PTCH1-214ENST00000547615 SMARCA4P51532 1647 aa16.43■□□□□ 0.22
PTCH1-214ENST00000547615 BAZ1AQ9NRL2 1556 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-214ENST00000547615 BAZ1BQ9UIG0 1483 aaKnown RBP16.35■□□□□ 0.21
PTCH1-214ENST00000547615 LAMC3Q9Y6N6 1575 aa16.35■□□□□ 0.21
PTCH1-214ENST00000547615 PEG3Q9GZU2 1588 aa16.34■□□□□ 0.21
PTCH1-214ENST00000547615 THOC2Q8NI27 1593 aaKnown RBP16.31■□□□□ 0.2
PTCH1-214ENST00000547615 NESP48681 1621 aa16.27■□□□□ 0.19
PTCH1-214ENST00000547615 PDS5BQ9NTI5 1447 aa16.25■□□□□ 0.19
PTCH1-214ENST00000547615 KIF21AQ7Z4S6 1674 aa16.17■□□□□ 0.18
PTCH1-214ENST00000547615 MRC2Q9UBG0 1479 aa16.08■□□□□ 0.16
PTCH1-214ENST00000547615 CADPSQ9ULU8 1353 aa16.07■□□□□ 0.16
PTCH1-214ENST00000547615 WDR62O43379 1518 aa16.06■□□□□ 0.16
PTCH1-214ENST00000547615 MROH2BQ7Z745 1585 aa16.05■□□□□ 0.16
PTCH1-214ENST00000547615 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
PTCH1-214ENST00000547615 TRIM41Q8WV44 630 aa15.95■□□□□ 0.14
PTCH1-214ENST00000547615 FANCD2Q9BXW9 1451 aa15.88■□□□□ 0.13
PTCH1-214ENST00000547615 WIZO95785 1651 aa15.87■□□□□ 0.13
PTCH1-214ENST00000547615 CFTRP13569 1480 aa15.84■□□□□ 0.13
PTCH1-214ENST00000547615 OSCARQ8IYS5 282 aa15.83■□□□□ 0.12
PTCH1-214ENST00000547615 PRDM2Q13029 1718 aa15.78■□□□□ 0.12
PTCH1-214ENST00000547615 TOP2AP11388 1531 aaKnown RBP15.76■□□□□ 0.11
PTCH1-214ENST00000547615 URB2Q14146 1524 aaKnown RBP15.7■□□□□ 0.1
PTCH1-214ENST00000547615 IFT140Q96RY7 1462 aa15.67■□□□□ 0.1
PTCH1-214ENST00000547615 ABCC8Q09428 1581 aa15.65■□□□□ 0.1
PTCH1-214ENST00000547615 RIMBP3CA6NJZ7 1639 aa15.65■□□□□ 0.1
PTCH1-214ENST00000547615 RIMBP3BA6NNM3 1639 aa15.65■□□□□ 0.1
PTCH1-214ENST00000547615 RIMBP3Q9UFD9 1639 aa15.65■□□□□ 0.1
PTCH1-214ENST00000547615 RSF1Q96T23 1441 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-214ENST00000547615 ARHGEF11O15085 1522 aa15.58■□□□□ 0.09
PTCH1-214ENST00000547615 EIF4G3O43432 1585 aaKnown RBP15.54■□□□□ 0.08
PTCH1-214ENST00000547615 TOPBP1Q92547 1522 aa15.54■□□□□ 0.08
PTCH1-214ENST00000547615 DNMBPQ6XZF7 1577 aa15.53■□□□□ 0.08
PTCH1-214ENST00000547615 ZNF608Q9ULD9 1512 aaPredicted RBP15.51■□□□□ 0.07
PTCH1-214ENST00000547615 CCDC88BA6NC98 1476 aa15.48■□□□□ 0.07
PTCH1-214ENST00000547615 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
PTCH1-214ENST00000547615 CHD1O14646 1710 aa15.45■□□□□ 0.06
PTCH1-214ENST00000547615 TARBP1Q13395 1621 aaKnown RBP15.43■□□□□ 0.06
PTCH1-214ENST00000547615 CYB5RLQ6IPT4 315 aa15.38■□□□□ 0.05
PTCH1-214ENST00000547615 ARAP1Q96P48 1450 aa15.37■□□□□ 0.05
PTCH1-214ENST00000547615 POLA1P09884 1462 aaPredicted RBP15.36■□□□□ 0.05
PTCH1-214ENST00000547615 AQRO60306 1485 aaKnown RBP eCLIP15.34■□□□□ 0.05
PTCH1-214ENST00000547615 SYNJ1O43426 1573 aa15.34■□□□□ 0.05
PTCH1-214ENST00000547615 TRHP20396 242 aaPredicted RBP15.34■□□□□ 0.05
PTCH1-214ENST00000547615 FBLN2P98095 1184 aa15.31■□□□□ 0.04
PTCH1-214ENST00000547615 MAGI1Q96QZ7 1491 aaPredicted RBP15.31■□□□□ 0.04
PTCH1-214ENST00000547615 CLASP1Q7Z460 1538 aa15.28■□□□□ 0.04
PTCH1-214ENST00000547615 SOGA1O94964 1423 aa15.28■□□□□ 0.04
PTCH1-214ENST00000547615 SNAPC4Q5SXM2 1469 aa15.26■□□□□ 0.03
PTCH1-214ENST00000547615 GRIN2BQ13224 1484 aa15.24■□□□□ 0.03
PTCH1-214ENST00000547615 SYNJ2O15056 1496 aa15.23■□□□□ 0.03
PTCH1-214ENST00000547615 FGD5Q6ZNL6 1462 aa15.22■□□□□ 0.03
PTCH1-214ENST00000547615 CHMP7Q8WUX9 453 aaPredicted RBP15.22■□□□□ 0.03
PTCH1-214ENST00000547615 RAD54L2Q9Y4B4 1467 aa15.21■□□□□ 0.03
PTCH1-214ENST00000547615 TDRD9Q8NDG6 1382 aaKnown RBP15.2■□□□□ 0.02
PTCH1-214ENST00000547615 PBRM1Q86U86 1689 aa15.17■□□□□ 0.02
PTCH1-214ENST00000547615 AEBP2Q6ZN18 517 aaPredicted RBP15.17■□□□□ 0.02
PTCH1-214ENST00000547615 GAPVD1Q14C86 1478 aa15.13■□□□□ 0.01
PTCH1-214ENST00000547615 CUX1P39880 1505 aa15.12■□□□□ 0.01
PTCH1-214ENST00000547615 ABCA10Q8WWZ4 1543 aa15.09■□□□□ 0.01
PTCH1-214ENST00000547615 ABCA5Q8WWZ7 1642 aa15.09■□□□□ 0.01
PTCH1-214ENST00000547615 GRIN2AQ12879 1464 aa15.02■□□□□ -0
PTCH1-214ENST00000547615 ADAMTS12P58397 1594 aa15□□□□□ -0.01
PTCH1-214ENST00000547615 WRNQ14191 1432 aaPredicted RBP eCLIP14.99□□□□□ -0.01
PTCH1-214ENST00000547615 SHROOM2Q13796 1616 aa14.98□□□□□ -0.01
PTCH1-214ENST00000547615 NUP160Q12769 1436 aa14.98□□□□□ -0.01
PTCH1-214ENST00000547615 CEP170Q5SW79 1584 aa14.96□□□□□ -0.01
PTCH1-214ENST00000547615 FHAD1B1AJZ9 1412 aa14.94□□□□□ -0.02
PTCH1-214ENST00000547615 ERICH3Q5RHP9 1530 aa14.94□□□□□ -0.02
PTCH1-214ENST00000547615 BIVM-ERCC5R4GMW8 1640 aa14.93□□□□□ -0.02
PTCH1-214ENST00000547615 TOP2BQ02880 1626 aa14.91□□□□□ -0.02
PTCH1-214ENST00000547615 ERCC6L2Q5T890 1561 aa14.88□□□□□ -0.03
PTCH1-214ENST00000547615 KIF13AQ9H1H9 1805 aa14.87□□□□□ -0.03
PTCH1-214ENST00000547615 MAPKBP1O60336 1514 aa14.83□□□□□ -0.04
PTCH1-214ENST00000547615 NPM1P06748 294 aaKnown RBP eCLIP14.82□□□□□ -0.04
PTCH1-214ENST00000547615 PRG4Q92954 1404 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 297.6 ms