RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 NISCHQ9Y2I1 1504 aa32.54■■■□□ 2.8
SCAF11-208ENST00000546534 AEBP2Q6ZN18 517 aaPredicted RBP30.41■■■□□ 2.46
SCAF11-208ENST00000546534 CHIC1Q5VXU3 224 aa29.83■■■□□ 2.37
SCAF11-208ENST00000546534 ABCC9O60706 1549 aa29.81■■■□□ 2.36
SCAF11-208ENST00000546534 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
SCAF11-208ENST00000546534 DNAJC5BQ9UF47 199 aa28.38■■■□□ 2.13
SCAF11-208ENST00000546534 RB1CC1Q8TDY2 1594 aa28.14■■■□□ 2.1
SCAF11-208ENST00000546534 NACADO15069 1562 aa27.85■■■□□ 2.05
SCAF11-208ENST00000546534 PABPN1Q86U42 306 aaKnown RBP eCLIP27.72■■■□□ 2.03
SCAF11-208ENST00000546534 DCAF8L2P0C7V8 631 aa27.7■■■□□ 2.02
SCAF11-208ENST00000546534 UNC13AQ9UPW8 1703 aa27.46■■□□□ 1.99
SCAF11-208ENST00000546534 BICRAQ9NZM4 1560 aa27.36■■□□□ 1.97
SCAF11-208ENST00000546534 MYO15BQ96JP2 1530 aa27.32■■□□□ 1.96
SCAF11-208ENST00000546534 SHROOM4Q9ULL8 1493 aa26.91■■□□□ 1.9
SCAF11-208ENST00000546534 CECR2Q9BXF3 1484 aa26.88■■□□□ 1.89
SCAF11-208ENST00000546534 ZCCHC6Q5VYS8 1495 aaKnown RBP26.87■■□□□ 1.89
SCAF11-208ENST00000546534 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
SCAF11-208ENST00000546534 DCAF1Q9Y4B6 1507 aa26.83■■□□□ 1.89
SCAF11-208ENST00000546534 SCRIBQ14160 1630 aa26.73■■□□□ 1.87
SCAF11-208ENST00000546534 EIF4G1Q04637 1599 aaKnown RBP26.71■■□□□ 1.87
SCAF11-208ENST00000546534 DNAJC5Q9H3Z4 198 aa26.34■■□□□ 1.81
SCAF11-208ENST00000546534 PHF23Q9BUL5 403 aaPredicted RBP26.22■■□□□ 1.79
SCAF11-208ENST00000546534 SENP3Q9H4L4 574 aaPredicted RBP25.92■■□□□ 1.74
SCAF11-208ENST00000546534 CUX2O14529 1486 aa25.83■■□□□ 1.73
SCAF11-208ENST00000546534 NCAPD3P42695 1498 aa25.75■■□□□ 1.71
SCAF11-208ENST00000546534 ERCC6Q03468 1493 aa25.74■■□□□ 1.71
SCAF11-208ENST00000546534 ATAD2BQ9ULI0 1458 aa25.61■■□□□ 1.69
SCAF11-208ENST00000546534 NESP48681 1621 aa25.49■■□□□ 1.67
SCAF11-208ENST00000546534 SMARCA2P51531 1590 aa25.48■■□□□ 1.67
SCAF11-208ENST00000546534 HMGXB3Q12766 1538 aa25.48■■□□□ 1.67
SCAF11-208ENST00000546534 SMARCA4P51532 1647 aa25.45■■□□□ 1.66
SCAF11-208ENST00000546534 BAZ1BQ9UIG0 1483 aaKnown RBP25.33■■□□□ 1.65
SCAF11-208ENST00000546534 THOC2Q8NI27 1593 aaKnown RBP25.27■■□□□ 1.64
SCAF11-208ENST00000546534 BAZ1AQ9NRL2 1556 aaPredicted RBP25.27■■□□□ 1.64
SCAF11-208ENST00000546534 PEG3Q9GZU2 1588 aa25.2■■□□□ 1.62
SCAF11-208ENST00000546534 LAMC3Q9Y6N6 1575 aa25.19■■□□□ 1.62
SCAF11-208ENST00000546534 PDS5BQ9NTI5 1447 aa25.09■■□□□ 1.61
SCAF11-208ENST00000546534 MROH2BQ7Z745 1585 aa25.09■■□□□ 1.61
SCAF11-208ENST00000546534 KIF21AQ7Z4S6 1674 aa25.08■■□□□ 1.61
SCAF11-208ENST00000546534 TRIM41Q8WV44 630 aa25.02■■□□□ 1.6
SCAF11-208ENST00000546534 CADPSQ9ULU8 1353 aa24.95■■□□□ 1.59
SCAF11-208ENST00000546534 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.58
SCAF11-208ENST00000546534 WDR62O43379 1518 aa24.83■■□□□ 1.57
SCAF11-208ENST00000546534 WIZO95785 1651 aa24.73■■□□□ 1.55
SCAF11-208ENST00000546534 CEP164Q9UPV0 1460 aa24.71■■□□□ 1.55
SCAF11-208ENST00000546534 FANCD2Q9BXW9 1451 aa24.66■■□□□ 1.54
SCAF11-208ENST00000546534 OSCARQ8IYS5 282 aa24.62■■□□□ 1.53
SCAF11-208ENST00000546534 CFTRP13569 1480 aa24.58■■□□□ 1.52
SCAF11-208ENST00000546534 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
SCAF11-208ENST00000546534 RSF1Q96T23 1441 aaPredicted RBP24.42■■□□□ 1.5
SCAF11-208ENST00000546534 TOP2AP11388 1531 aaKnown RBP24.4■■□□□ 1.5
SCAF11-208ENST00000546534 PLPPR3Q6T4P5 718 aa24.31■■□□□ 1.48
SCAF11-208ENST00000546534 RIMBP3CA6NJZ7 1639 aa24.3■■□□□ 1.48
SCAF11-208ENST00000546534 RIMBP3BA6NNM3 1639 aa24.3■■□□□ 1.48
SCAF11-208ENST00000546534 RIMBP3Q9UFD9 1639 aa24.3■■□□□ 1.48
SCAF11-208ENST00000546534 ZNF608Q9ULD9 1512 aaPredicted RBP24.27■■□□□ 1.48
SCAF11-208ENST00000546534 IFT140Q96RY7 1462 aa24.24■■□□□ 1.47
SCAF11-208ENST00000546534 ARHGEF11O15085 1522 aa24.2■■□□□ 1.47
SCAF11-208ENST00000546534 PRDM2Q13029 1718 aa24.18■■□□□ 1.46
SCAF11-208ENST00000546534 CCDC88BA6NC98 1476 aa24.15■■□□□ 1.46
SCAF11-208ENST00000546534 TOPBP1Q92547 1522 aa24.15■■□□□ 1.46
SCAF11-208ENST00000546534 FOXD1Q16676 465 aa24.13■■□□□ 1.45
SCAF11-208ENST00000546534 CYB5RLQ6IPT4 315 aa24.09■■□□□ 1.45
SCAF11-208ENST00000546534 EIF4G3O43432 1585 aaKnown RBP24.07■■□□□ 1.44
SCAF11-208ENST00000546534 ABCC8Q09428 1581 aa24.03■■□□□ 1.44
SCAF11-208ENST00000546534 AQRO60306 1485 aaKnown RBP eCLIP24■■□□□ 1.438e-11■□□□□ 11.3
SCAF11-208ENST00000546534 DNMBPQ6XZF7 1577 aa23.99■■□□□ 1.43
SCAF11-208ENST00000546534 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
SCAF11-208ENST00000546534 CHD1O14646 1710 aa23.95■■□□□ 1.42
SCAF11-208ENST00000546534 TARBP1Q13395 1621 aaKnown RBP23.95■■□□□ 1.42
SCAF11-208ENST00000546534 ARAP1Q96P48 1450 aa23.94■■□□□ 1.42
SCAF11-208ENST00000546534 FBLN2P98095 1184 aa23.94■■□□□ 1.42
SCAF11-208ENST00000546534 POLA1P09884 1462 aaPredicted RBP23.87■■□□□ 1.41
SCAF11-208ENST00000546534 RAD54L2Q9Y4B4 1467 aa23.81■■□□□ 1.4
SCAF11-208ENST00000546534 TDRD9Q8NDG6 1382 aaKnown RBP23.8■■□□□ 1.4
SCAF11-208ENST00000546534 SOGA1O94964 1423 aa23.77■■□□□ 1.4
SCAF11-208ENST00000546534 SNAPC4Q5SXM2 1469 aa23.72■■□□□ 1.39
SCAF11-208ENST00000546534 CLASP1Q7Z460 1538 aa23.69■■□□□ 1.38
SCAF11-208ENST00000546534 CHMP7Q8WUX9 453 aaPredicted RBP23.68■■□□□ 1.38
SCAF11-208ENST00000546534 FGD5Q6ZNL6 1462 aa23.67■■□□□ 1.38
SCAF11-208ENST00000546534 WDR97A6NE52 1622 aa23.63■■□□□ 1.37
SCAF11-208ENST00000546534 MAGI1Q96QZ7 1491 aaPredicted RBP23.62■■□□□ 1.37
SCAF11-208ENST00000546534 SYNJ1O43426 1573 aa23.62■■□□□ 1.37
SCAF11-208ENST00000546534 GRIN2BQ13224 1484 aa23.6■■□□□ 1.37
SCAF11-208ENST00000546534 CUX1P39880 1505 aa23.58■■□□□ 1.36
SCAF11-208ENST00000546534 SYNJ2O15056 1496 aa23.56■■□□□ 1.36
SCAF11-208ENST00000546534 GAPVD1Q14C86 1478 aa23.49■■□□□ 1.35
SCAF11-208ENST00000546534 PBRM1Q86U86 1689 aa23.41■■□□□ 1.34
SCAF11-208ENST00000546534 ABCA10Q8WWZ4 1543 aa23.37■■□□□ 1.33
SCAF11-208ENST00000546534 ABCA5Q8WWZ7 1642 aa23.35■■□□□ 1.33
SCAF11-208ENST00000546534 ERCC6L2Q5T890 1561 aa23.32■■□□□ 1.32
SCAF11-208ENST00000546534 GRIN2AQ12879 1464 aa23.29■■□□□ 1.32
SCAF11-208ENST00000546534 NUP160Q12769 1436 aa23.24■■□□□ 1.31
SCAF11-208ENST00000546534 CEP170Q5SW79 1584 aa23.23■■□□□ 1.31
SCAF11-208ENST00000546534 WRNQ14191 1432 aaPredicted RBP eCLIP23.21■■□□□ 1.31
SCAF11-208ENST00000546534 ADAMTS12P58397 1594 aa23.2■■□□□ 1.3
SCAF11-208ENST00000546534 FHAD1B1AJZ9 1412 aa23.15■■□□□ 1.3
SCAF11-208ENST00000546534 SHROOM2Q13796 1616 aa23.15■■□□□ 1.3
SCAF11-208ENST00000546534 SUPT5HO00267 1087 aaKnown RBP23.07■■□□□ 1.28
SCAF11-208ENST00000546534 PPP6R1Q9UPN7 881 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms