RNA–Protein interactions for RNA: ENST00000544365.5

ECHDC2-225, Transcript of enoyl-CoA hydratase domain containing 2, humanhuman

TSL 5

Gene ECHDC2, Length 1,335 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC2-225ENST00000544365 NISCHQ9Y2I1 1504 aa49.51■■■■■ 5.52
ECHDC2-225ENST00000544365 CCDC180Q9P1Z9 1646 aa44■■■■■ 4.63
ECHDC2-225ENST00000544365 ABCC9O60706 1549 aa43.03■■■■■ 4.48
ECHDC2-225ENST00000544365 RB1CC1Q8TDY2 1594 aa41.43■■■■■ 4.22
ECHDC2-225ENST00000544365 DCAF8L2P0C7V8 631 aa41.4■■■■■ 4.22
ECHDC2-225ENST00000544365 NACADO15069 1562 aa41.39■■■■■ 4.22
ECHDC2-225ENST00000544365 ZCCHC6Q5VYS8 1495 aaKnown RBP41.22■■■■■ 4.19
ECHDC2-225ENST00000544365 MYO15BQ96JP2 1530 aa41.15■■■■■ 4.18
ECHDC2-225ENST00000544365 DCAF1Q9Y4B6 1507 aa40.97■■■■■ 4.15
ECHDC2-225ENST00000544365 UNC13AQ9UPW8 1703 aa40.5■■■■■ 4.07
ECHDC2-225ENST00000544365 PABPN1Q86U42 306 aaKnown RBP eCLIP40.24■■■■■ 4.032e-7■□□□□ 10.8
ECHDC2-225ENST00000544365 BICRAQ9NZM4 1560 aa40.16■■■■■ 4.02
ECHDC2-225ENST00000544365 SCRIBQ14160 1630 aa40.12■■■■■ 4.01
ECHDC2-225ENST00000544365 SHROOM4Q9ULL8 1493 aa39.74■■■■□ 3.95
ECHDC2-225ENST00000544365 DNAJC5BQ9UF47 199 aa39.53■■■■□ 3.92
ECHDC2-225ENST00000544365 EIF4G1Q04637 1599 aaKnown RBP39.1■■■■□ 3.85
ECHDC2-225ENST00000544365 CC2D2AQ9P2K1 1620 aa38.94■■■■□ 3.82
ECHDC2-225ENST00000544365 CECR2Q9BXF3 1484 aa38.68■■■■□ 3.78
ECHDC2-225ENST00000544365 SMARCA4P51532 1647 aa38.4■■■■□ 3.74
ECHDC2-225ENST00000544365 BAZ1AQ9NRL2 1556 aaPredicted RBP38.36■■■■□ 3.73
ECHDC2-225ENST00000544365 NCAPD3P42695 1498 aa38.2■■■■□ 3.71
ECHDC2-225ENST00000544365 ATAD2BQ9ULI0 1458 aa38.2■■■■□ 3.71
ECHDC2-225ENST00000544365 SMARCA2P51531 1590 aa38.16■■■■□ 3.7
ECHDC2-225ENST00000544365 MROH2BQ7Z745 1585 aa38.14■■■■□ 3.7
ECHDC2-225ENST00000544365 PEG3Q9GZU2 1588 aa38.04■■■■□ 3.68
ECHDC2-225ENST00000544365 HMGXB3Q12766 1538 aa37.98■■■■□ 3.67
ECHDC2-225ENST00000544365 BAZ1BQ9UIG0 1483 aaKnown RBP37.88■■■■□ 3.65
ECHDC2-225ENST00000544365 WIZO95785 1651 aa37.74■■■■□ 3.63
ECHDC2-225ENST00000544365 RSF1Q96T23 1441 aaPredicted RBP37.72■■■■□ 3.63
ECHDC2-225ENST00000544365 TOP2AP11388 1531 aaKnown RBP37.32■■■■□ 3.57
ECHDC2-225ENST00000544365 NESP48681 1621 aa37.24■■■■□ 3.55
ECHDC2-225ENST00000544365 LAMC3Q9Y6N6 1575 aa37.18■■■■□ 3.54
ECHDC2-225ENST00000544365 ERCC6Q03468 1493 aa37.1■■■■□ 3.53
ECHDC2-225ENST00000544365 CADPSQ9ULU8 1353 aa37.08■■■■□ 3.53
ECHDC2-225ENST00000544365 PDS5BQ9NTI5 1447 aa36.94■■■■□ 3.5
ECHDC2-225ENST00000544365 CCDC88BA6NC98 1476 aa36.91■■■■□ 3.5
ECHDC2-225ENST00000544365 CFTRP13569 1480 aa36.86■■■■□ 3.49
ECHDC2-225ENST00000544365 KIF21AQ7Z4S6 1674 aa36.81■■■■□ 3.48
ECHDC2-225ENST00000544365 SUPT5HO00267 1087 aaKnown RBP36.79■■■■□ 3.48
ECHDC2-225ENST00000544365 CUX2O14529 1486 aa36.72■■■■□ 3.47
ECHDC2-225ENST00000544365 THOC2Q8NI27 1593 aaKnown RBP36.67■■■■□ 3.46
ECHDC2-225ENST00000544365 FANCD2Q9BXW9 1451 aa36.64■■■■□ 3.46
ECHDC2-225ENST00000544365 CEP164Q9UPV0 1460 aa36.58■■■■□ 3.45
ECHDC2-225ENST00000544365 PRDM2Q13029 1718 aa36.58■■■■□ 3.45
ECHDC2-225ENST00000544365 MRC2Q9UBG0 1479 aa36.53■■■■□ 3.44
ECHDC2-225ENST00000544365 WDR62O43379 1518 aa36.4■■■■□ 3.42
ECHDC2-225ENST00000544365 URB2Q14146 1524 aaKnown RBP36.26■■■■□ 3.4
ECHDC2-225ENST00000544365 ABCC8Q09428 1581 aa36.09■■■■□ 3.37
ECHDC2-225ENST00000544365 TOPBP1Q92547 1522 aa36.05■■■■□ 3.36
ECHDC2-225ENST00000544365 DNMBPQ6XZF7 1577 aa36■■■■□ 3.35
ECHDC2-225ENST00000544365 IFT140Q96RY7 1462 aa35.83■■■■□ 3.33
ECHDC2-225ENST00000544365 CUX1P39880 1505 aa35.77■■■■□ 3.32
ECHDC2-225ENST00000544365 POLA1P09884 1462 aaPredicted RBP35.74■■■■□ 3.31
ECHDC2-225ENST00000544365 TARBP1Q13395 1621 aaKnown RBP35.67■■■■□ 3.3
ECHDC2-225ENST00000544365 FGD5Q6ZNL6 1462 aa35.65■■■■□ 3.3
ECHDC2-225ENST00000544365 ZNF608Q9ULD9 1512 aaPredicted RBP35.65■■■■□ 3.3
ECHDC2-225ENST00000544365 SOGA1O94964 1423 aa35.63■■■■□ 3.29
ECHDC2-225ENST00000544365 DNAJC5Q9H3Z4 198 aa35.62■■■■□ 3.29
ECHDC2-225ENST00000544365 RAD54L2Q9Y4B4 1467 aa35.59■■■■□ 3.29
ECHDC2-225ENST00000544365 WRNQ14191 1432 aaPredicted RBP eCLIP35.57■■■■□ 3.28
ECHDC2-225ENST00000544365 EIF4G3O43432 1585 aaKnown RBP35.5■■■■□ 3.27
ECHDC2-225ENST00000544365 TOP2BQ02880 1626 aa35.49■■■■□ 3.27
ECHDC2-225ENST00000544365 BIVM-ERCC5R4GMW8 1640 aa35.48■■■■□ 3.27
ECHDC2-225ENST00000544365 AQRO60306 1485 aaKnown RBP eCLIP35.47■■■■□ 3.273e-6■■□□□ 13.8
ECHDC2-225ENST00000544365 SYNJ1O43426 1573 aa35.45■■■■□ 3.27
ECHDC2-225ENST00000544365 TDRD9Q8NDG6 1382 aaKnown RBP35.41■■■■□ 3.26
ECHDC2-225ENST00000544365 WDR97A6NE52 1622 aa35.39■■■■□ 3.26
ECHDC2-225ENST00000544365 ABCA10Q8WWZ4 1543 aa35.33■■■■□ 3.25
ECHDC2-225ENST00000544365 OSCARQ8IYS5 282 aa35.26■■■■□ 3.23
ECHDC2-225ENST00000544365 GAPVD1Q14C86 1478 aa35.2■■■■□ 3.23
ECHDC2-225ENST00000544365 GRIN2BQ13224 1484 aa35.19■■■■□ 3.22
ECHDC2-225ENST00000544365 ABCA5Q8WWZ7 1642 aa35.16■■■■□ 3.22
ECHDC2-225ENST00000544365 SNAPC4Q5SXM2 1469 aa35.11■■■■□ 3.21
ECHDC2-225ENST00000544365 PBRM1Q86U86 1689 aa35.11■■■■□ 3.21
ECHDC2-225ENST00000544365 MAGI1Q96QZ7 1491 aaPredicted RBP35.09■■■■□ 3.21
ECHDC2-225ENST00000544365 CHD1O14646 1710 aa35.08■■■■□ 3.21
ECHDC2-225ENST00000544365 FBLN2P98095 1184 aa35.06■■■■□ 3.2
ECHDC2-225ENST00000544365 CHMP7Q8WUX9 453 aaPredicted RBP34.99■■■■□ 3.19
ECHDC2-225ENST00000544365 SYNJ2O15056 1496 aa34.96■■■■□ 3.19
ECHDC2-225ENST00000544365 ERICH3Q5RHP9 1530 aa34.91■■■■□ 3.18
ECHDC2-225ENST00000544365 KIF27Q86VH2 1401 aa34.83■■■■□ 3.17
ECHDC2-225ENST00000544365 ADAMTS12P58397 1594 aa34.81■■■■□ 3.16
ECHDC2-225ENST00000544365 FHAD1B1AJZ9 1412 aa34.8■■■■□ 3.16
ECHDC2-225ENST00000544365 TRIM41Q8WV44 630 aa34.77■■■■□ 3.16
ECHDC2-225ENST00000544365 GRIN2AQ12879 1464 aa34.73■■■■□ 3.15
ECHDC2-225ENST00000544365 IGF1RP08069 1367 aa34.71■■■■□ 3.15
ECHDC2-225ENST00000544365 CLASP1Q7Z460 1538 aa34.68■■■■□ 3.14
ECHDC2-225ENST00000544365 RIMBP3CA6NJZ7 1639 aa34.62■■■■□ 3.13
ECHDC2-225ENST00000544365 RIMBP3BA6NNM3 1639 aa34.62■■■■□ 3.13
ECHDC2-225ENST00000544365 RIMBP3Q9UFD9 1639 aa34.62■■■■□ 3.13
ECHDC2-225ENST00000544365 ARHGEF11O15085 1522 aa34.62■■■■□ 3.13
ECHDC2-225ENST00000544365 CUL7Q14999 1698 aa34.59■■■■□ 3.13
ECHDC2-225ENST00000544365 NUP160Q12769 1436 aa34.58■■■■□ 3.13
ECHDC2-225ENST00000544365 CEP170Q5SW79 1584 aa34.55■■■■□ 3.12
ECHDC2-225ENST00000544365 RUSC2Q8N2Y8 1516 aa34.51■■■■□ 3.11
ECHDC2-225ENST00000544365 CARMIL1Q5VZK9 1371 aa34.5■■■■□ 3.11
ECHDC2-225ENST00000544365 CHIC1Q5VXU3 224 aa34.35■■■■□ 3.09
ECHDC2-225ENST00000544365 CYB5RLQ6IPT4 315 aa34.33■■■■□ 3.09
ECHDC2-225ENST00000544365 ARAP1Q96P48 1450 aa34.33■■■■□ 3.09
ECHDC2-225ENST00000544365 SHROOM2Q13796 1616 aa34.32■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms