RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 NISCHQ9Y2I1 1504 aa32.13■■■□□ 2.73
VPS33A-209ENST00000544349 CCDC180Q9P1Z9 1646 aa27.96■■■□□ 2.07
VPS33A-209ENST00000544349 ZCCHC6Q5VYS8 1495 aaKnown RBP27.01■■□□□ 1.91
VPS33A-209ENST00000544349 DCAF1Q9Y4B6 1507 aa26.56■■□□□ 1.84
VPS33A-209ENST00000544349 DCAF8L2P0C7V8 631 aa26.54■■□□□ 1.84
VPS33A-209ENST00000544349 ABCC9O60706 1549 aa26.4■■□□□ 1.82
VPS33A-209ENST00000544349 SHROOM4Q9ULL8 1493 aa26.28■■□□□ 1.8
VPS33A-209ENST00000544349 MYO15BQ96JP2 1530 aa26.21■■□□□ 1.79
VPS33A-209ENST00000544349 NACADO15069 1562 aa26.03■■□□□ 1.76
VPS33A-209ENST00000544349 RB1CC1Q8TDY2 1594 aa25.79■■□□□ 1.72
VPS33A-209ENST00000544349 SCRIBQ14160 1630 aa25.74■■□□□ 1.71
VPS33A-209ENST00000544349 SUPT5HO00267 1087 aaKnown RBP25.34■■□□□ 1.65
VPS33A-209ENST00000544349 UNC13AQ9UPW8 1703 aa25.31■■□□□ 1.64
VPS33A-209ENST00000544349 BICRAQ9NZM4 1560 aa25.03■■□□□ 1.6
VPS33A-209ENST00000544349 CECR2Q9BXF3 1484 aa24.98■■□□□ 1.59
VPS33A-209ENST00000544349 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
VPS33A-209ENST00000544349 PABPN1Q86U42 306 aaKnown RBP eCLIP24.93■■□□□ 1.58
VPS33A-209ENST00000544349 MROH2BQ7Z745 1585 aa24.84■■□□□ 1.57
VPS33A-209ENST00000544349 BAZ1AQ9NRL2 1556 aaPredicted RBP24.8■■□□□ 1.56
VPS33A-209ENST00000544349 SMARCA4P51532 1647 aa24.69■■□□□ 1.54
VPS33A-209ENST00000544349 WIZO95785 1651 aa24.65■■□□□ 1.54
VPS33A-209ENST00000544349 PEG3Q9GZU2 1588 aa24.37■■□□□ 1.49
VPS33A-209ENST00000544349 TOP2AP11388 1531 aaKnown RBP24.37■■□□□ 1.49
VPS33A-209ENST00000544349 CHIC1Q5VXU3 224 aa24.3■■□□□ 1.48
VPS33A-209ENST00000544349 ATAD2BQ9ULI0 1458 aa24.26■■□□□ 1.47
VPS33A-209ENST00000544349 EIF4G1Q04637 1599 aaKnown RBP24.26■■□□□ 1.47
VPS33A-209ENST00000544349 SMARCA2P51531 1590 aa24.24■■□□□ 1.47
VPS33A-209ENST00000544349 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.45
VPS33A-209ENST00000544349 BAZ1BQ9UIG0 1483 aaKnown RBP24.12■■□□□ 1.45
VPS33A-209ENST00000544349 NCAPD3P42695 1498 aa24.04■■□□□ 1.44
VPS33A-209ENST00000544349 HMGXB3Q12766 1538 aa24■■□□□ 1.43
VPS33A-209ENST00000544349 CC2D2AQ9P2K1 1620 aa23.89■■□□□ 1.42
VPS33A-209ENST00000544349 TRIM41Q8WV44 630 aa23.81■■□□□ 1.4
VPS33A-209ENST00000544349 DNAJC5BQ9UF47 199 aa23.73■■□□□ 1.39
VPS33A-209ENST00000544349 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
VPS33A-209ENST00000544349 CFTRP13569 1480 aa23.53■■□□□ 1.36
VPS33A-209ENST00000544349 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.35
VPS33A-209ENST00000544349 CADPSQ9ULU8 1353 aa23.43■■□□□ 1.34
VPS33A-209ENST00000544349 PRDM2Q13029 1718 aa23.41■■□□□ 1.34
VPS33A-209ENST00000544349 SYNJ1O43426 1573 aa23.39■■□□□ 1.34
VPS33A-209ENST00000544349 LOC105371045A0A1W2PR82 267 aa23.39■■□□□ 1.33
VPS33A-209ENST00000544349 FAM9AQ8IZU1 332 aaPredicted RBP23.39■■□□□ 1.33
VPS33A-209ENST00000544349 TOP2BQ02880 1626 aa23.29■■□□□ 1.32
VPS33A-209ENST00000544349 BIVM-ERCC5R4GMW8 1640 aa23.27■■□□□ 1.31
VPS33A-209ENST00000544349 SOGA1O94964 1423 aa23.23■■□□□ 1.31
VPS33A-209ENST00000544349 CUX1P39880 1505 aa23.21■■□□□ 1.31
VPS33A-209ENST00000544349 NESP48681 1621 aa23.21■■□□□ 1.31
VPS33A-209ENST00000544349 LAMC3Q9Y6N6 1575 aa23.2■■□□□ 1.3
VPS33A-209ENST00000544349 EEA1Q15075 1411 aa23.19■■□□□ 1.3
VPS33A-209ENST00000544349 FANCD2Q9BXW9 1451 aa23.17■■□□□ 1.3
VPS33A-209ENST00000544349 RUSC2Q8N2Y8 1516 aa23.16■■□□□ 1.3
VPS33A-209ENST00000544349 CSRNP3Q8WYN3 585 aa23.08■■□□□ 1.29
VPS33A-209ENST00000544349 EHMT2Q96KQ7 1210 aa23.06■■□□□ 1.28
VPS33A-209ENST00000544349 PDS5BQ9NTI5 1447 aa23.02■■□□□ 1.28
VPS33A-209ENST00000544349 CEP164Q9UPV0 1460 aa23.01■■□□□ 1.27
VPS33A-209ENST00000544349 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
VPS33A-209ENST00000544349 FGD5Q6ZNL6 1462 aa22.94■■□□□ 1.26
VPS33A-209ENST00000544349 PCGF6Q9BYE7 350 aa22.94■■□□□ 1.26
VPS33A-209ENST00000544349 TOPBP1Q92547 1522 aa22.93■■□□□ 1.26
VPS33A-209ENST00000544349 KIF21AQ7Z4S6 1674 aa22.93■■□□□ 1.26
VPS33A-209ENST00000544349 KIF21BO75037 1637 aa22.89■■□□□ 1.25
VPS33A-209ENST00000544349 KIF27Q86VH2 1401 aa22.89■■□□□ 1.25
VPS33A-209ENST00000544349 URB2Q14146 1524 aaKnown RBP22.88■■□□□ 1.25
VPS33A-209ENST00000544349 GOLGA3Q08378 1498 aa22.87■■□□□ 1.25
VPS33A-209ENST00000544349 HRCP23327 699 aa22.85■■□□□ 1.25
VPS33A-209ENST00000544349 TNIKQ9UKE5 1360 aa22.83■■□□□ 1.24
VPS33A-209ENST00000544349 POLA1P09884 1462 aaPredicted RBP22.83■■□□□ 1.24
VPS33A-209ENST00000544349 CUX2O14529 1486 aa22.81■■□□□ 1.24
VPS33A-209ENST00000544349 UBTFP17480 764 aaKnown RBP22.79■■□□□ 1.24
VPS33A-209ENST00000544349 RAD54L2Q9Y4B4 1467 aa22.76■■□□□ 1.23
VPS33A-209ENST00000544349 PRXQ9BXM0 1461 aa22.76■■□□□ 1.23
VPS33A-209ENST00000544349 RAPGEF2Q9Y4G8 1499 aa22.76■■□□□ 1.23
VPS33A-209ENST00000544349 ABCA10Q8WWZ4 1543 aa22.74■■□□□ 1.23
VPS33A-209ENST00000544349 MRC2Q9UBG0 1479 aa22.72■■□□□ 1.23
VPS33A-209ENST00000544349 ERICH3Q5RHP9 1530 aa22.71■■□□□ 1.23
VPS33A-209ENST00000544349 CEP162Q5TB80 1403 aa22.7■■□□□ 1.22
VPS33A-209ENST00000544349 IGF1RP08069 1367 aa22.69■■□□□ 1.22
VPS33A-209ENST00000544349 WDR97A6NE52 1622 aa22.66■■□□□ 1.22
VPS33A-209ENST00000544349 ERCC6Q03468 1493 aa22.61■■□□□ 1.21
VPS33A-209ENST00000544349 WDR62O43379 1518 aa22.6■■□□□ 1.21
VPS33A-209ENST00000544349 TARBP1Q13395 1621 aaKnown RBP22.58■■□□□ 1.21
VPS33A-209ENST00000544349 CARMIL1Q5VZK9 1371 aa22.58■■□□□ 1.2
VPS33A-209ENST00000544349 ABCA5Q8WWZ7 1642 aa22.55■■□□□ 1.2
VPS33A-209ENST00000544349 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
VPS33A-209ENST00000544349 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
VPS33A-209ENST00000544349 CLIP1P30622 1438 aa22.52■■□□□ 1.19
VPS33A-209ENST00000544349 THOC2Q8NI27 1593 aaKnown RBP22.51■■□□□ 1.19
VPS33A-209ENST00000544349 GAPVD1Q14C86 1478 aa22.5■■□□□ 1.19
VPS33A-209ENST00000544349 CUL7Q14999 1698 aa22.49■■□□□ 1.19
VPS33A-209ENST00000544349 IFT140Q96RY7 1462 aa22.45■■□□□ 1.18
VPS33A-209ENST00000544349 PPARGC1BQ86YN6 1023 aaKnown RBP22.45■■□□□ 1.18
VPS33A-209ENST00000544349 RANGAP1P46060 587 aaPredicted RBP22.4■■□□□ 1.18
VPS33A-209ENST00000544349 AQRO60306 1485 aaKnown RBP eCLIP22.38■■□□□ 1.17
VPS33A-209ENST00000544349 PBRM1Q86U86 1689 aa22.37■■□□□ 1.17
VPS33A-209ENST00000544349 ZNF608Q9ULD9 1512 aaPredicted RBP22.34■■□□□ 1.17
VPS33A-209ENST00000544349 VPS8Q8N3P4 1428 aa22.33■■□□□ 1.16
VPS33A-209ENST00000544349 GRIN2BQ13224 1484 aa22.31■■□□□ 1.16
VPS33A-209ENST00000544349 ARAP1Q96P48 1450 aa22.29■■□□□ 1.16
VPS33A-209ENST00000544349 ARHGAP35Q9NRY4 1499 aa22.28■■□□□ 1.16
VPS33A-209ENST00000544349 CTTNBP2Q8WZ74 1663 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms