RNA–Protein interactions for RNA: ENST00000544316.1

COPS7A-219, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 5

Gene COPS7A, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-219ENST00000544316 NISCHQ9Y2I1 1504 aa26.05■■□□□ 1.76
COPS7A-219ENST00000544316 CCDC180Q9P1Z9 1646 aa23.45■■□□□ 1.34
COPS7A-219ENST00000544316 ABCC9O60706 1549 aa23.39■■□□□ 1.34
COPS7A-219ENST00000544316 RB1CC1Q8TDY2 1594 aa22.37■■□□□ 1.17
COPS7A-219ENST00000544316 NACADO15069 1562 aa22.21■■□□□ 1.15
COPS7A-219ENST00000544316 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
COPS7A-219ENST00000544316 DNAJC5BQ9UF47 199 aa21.96■■□□□ 1.11
COPS7A-219ENST00000544316 MYO15BQ96JP2 1530 aa21.94■■□□□ 1.1
COPS7A-219ENST00000544316 PABPN1Q86U42 306 aaKnown RBP eCLIP21.77■■□□□ 1.08
COPS7A-219ENST00000544316 UNC13AQ9UPW8 1703 aa21.74■■□□□ 1.07
COPS7A-219ENST00000544316 DCAF1Q9Y4B6 1507 aa21.6■■□□□ 1.05
COPS7A-219ENST00000544316 BICRAQ9NZM4 1560 aa21.59■■□□□ 1.05
COPS7A-219ENST00000544316 ZCCHC6Q5VYS8 1495 aaKnown RBP21.56■■□□□ 1.04
COPS7A-219ENST00000544316 SHROOM4Q9ULL8 1493 aa21.5■■□□□ 1.03
COPS7A-219ENST00000544316 SCRIBQ14160 1630 aa21.24■□□□□ 0.99
COPS7A-219ENST00000544316 CC2D2AQ9P2K1 1620 aa21.17■□□□□ 0.98
COPS7A-219ENST00000544316 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.98
COPS7A-219ENST00000544316 EIF4G1Q04637 1599 aaKnown RBP21.12■□□□□ 0.97
COPS7A-219ENST00000544316 NCAPD3P42695 1498 aa20.5■□□□□ 0.87
COPS7A-219ENST00000544316 SMARCA2P51531 1590 aa20.38■□□□□ 0.85
COPS7A-219ENST00000544316 ATAD2BQ9ULI0 1458 aa20.37■□□□□ 0.85
COPS7A-219ENST00000544316 DNAJC5Q9H3Z4 198 aa20.36■□□□□ 0.85
COPS7A-219ENST00000544316 CUX2O14529 1486 aa20.32■□□□□ 0.84
COPS7A-219ENST00000544316 HMGXB3Q12766 1538 aa20.32■□□□□ 0.84
COPS7A-219ENST00000544316 SMARCA4P51532 1647 aa20.31■□□□□ 0.84
COPS7A-219ENST00000544316 ERCC6Q03468 1493 aa20.3■□□□□ 0.84
COPS7A-219ENST00000544316 BAZ1AQ9NRL2 1556 aaPredicted RBP20.27■□□□□ 0.84
COPS7A-219ENST00000544316 BAZ1BQ9UIG0 1483 aaKnown RBP20.18■□□□□ 0.82
COPS7A-219ENST00000544316 PEG3Q9GZU2 1588 aa20.17■□□□□ 0.82
COPS7A-219ENST00000544316 LAMC3Q9Y6N6 1575 aa20.04■□□□□ 0.8
COPS7A-219ENST00000544316 NESP48681 1621 aa20.04■□□□□ 0.8
COPS7A-219ENST00000544316 MROH2BQ7Z745 1585 aa20■□□□□ 0.79
COPS7A-219ENST00000544316 PDS5BQ9NTI5 1447 aa19.97■□□□□ 0.79
COPS7A-219ENST00000544316 THOC2Q8NI27 1593 aaKnown RBP19.89■□□□□ 0.77
COPS7A-219ENST00000544316 CADPSQ9ULU8 1353 aa19.86■□□□□ 0.77
COPS7A-219ENST00000544316 KIF21AQ7Z4S6 1674 aa19.81■□□□□ 0.76
COPS7A-219ENST00000544316 WIZO95785 1651 aa19.75■□□□□ 0.75
COPS7A-219ENST00000544316 MRC2Q9UBG0 1479 aa19.73■□□□□ 0.75
COPS7A-219ENST00000544316 WDR62O43379 1518 aa19.66■□□□□ 0.74
COPS7A-219ENST00000544316 CEP164Q9UPV0 1460 aa19.65■□□□□ 0.74
COPS7A-219ENST00000544316 RSF1Q96T23 1441 aaPredicted RBP19.61■□□□□ 0.73
COPS7A-219ENST00000544316 CFTRP13569 1480 aa19.6■□□□□ 0.73
COPS7A-219ENST00000544316 FANCD2Q9BXW9 1451 aa19.6■□□□□ 0.73
COPS7A-219ENST00000544316 TOP2AP11388 1531 aaKnown RBP19.56■□□□□ 0.72
COPS7A-219ENST00000544316 OSCARQ8IYS5 282 aa19.41■□□□□ 0.7
COPS7A-219ENST00000544316 PRDM2Q13029 1718 aa19.4■□□□□ 0.7
COPS7A-219ENST00000544316 URB2Q14146 1524 aaKnown RBP19.38■□□□□ 0.69
COPS7A-219ENST00000544316 TRIM41Q8WV44 630 aa19.36■□□□□ 0.69
COPS7A-219ENST00000544316 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
COPS7A-219ENST00000544316 ABCC8Q09428 1581 aa19.31■□□□□ 0.68
COPS7A-219ENST00000544316 IFT140Q96RY7 1462 aa19.28■□□□□ 0.68
COPS7A-219ENST00000544316 TOPBP1Q92547 1522 aa19.2■□□□□ 0.66
COPS7A-219ENST00000544316 DNMBPQ6XZF7 1577 aa19.15■□□□□ 0.66
COPS7A-219ENST00000544316 ZNF608Q9ULD9 1512 aaPredicted RBP19.13■□□□□ 0.65
COPS7A-219ENST00000544316 EIF4G3O43432 1585 aaKnown RBP19.05■□□□□ 0.64
COPS7A-219ENST00000544316 RIMBP3CA6NJZ7 1639 aa19.03■□□□□ 0.64
COPS7A-219ENST00000544316 RIMBP3BA6NNM3 1639 aa19.03■□□□□ 0.64
COPS7A-219ENST00000544316 RIMBP3Q9UFD9 1639 aa19.03■□□□□ 0.64
COPS7A-219ENST00000544316 TARBP1Q13395 1621 aaKnown RBP19.02■□□□□ 0.64
COPS7A-219ENST00000544316 POLA1P09884 1462 aaPredicted RBP18.99■□□□□ 0.63
COPS7A-219ENST00000544316 ARHGEF11O15085 1522 aa18.99■□□□□ 0.63
COPS7A-219ENST00000544316 AQRO60306 1485 aaKnown RBP eCLIP18.98■□□□□ 0.63
COPS7A-219ENST00000544316 WDR97A6NE52 1622 aa18.96■□□□□ 0.63
COPS7A-219ENST00000544316 SOGA1O94964 1423 aa18.96■□□□□ 0.63
COPS7A-219ENST00000544316 FBLN2P98095 1184 aa18.93■□□□□ 0.62
COPS7A-219ENST00000544316 CHD1O14646 1710 aa18.92■□□□□ 0.62
COPS7A-219ENST00000544316 CYB5RLQ6IPT4 315 aa18.89■□□□□ 0.61
COPS7A-219ENST00000544316 RAD54L2Q9Y4B4 1467 aa18.88■□□□□ 0.61
COPS7A-219ENST00000544316 TDRD9Q8NDG6 1382 aaKnown RBP18.87■□□□□ 0.61
COPS7A-219ENST00000544316 FGD5Q6ZNL6 1462 aa18.86■□□□□ 0.61
COPS7A-219ENST00000544316 CHMP7Q8WUX9 453 aaPredicted RBP18.84■□□□□ 0.61
COPS7A-219ENST00000544316 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
COPS7A-219ENST00000544316 GRIN2BQ13224 1484 aa18.81■□□□□ 0.6
COPS7A-219ENST00000544316 CUX1P39880 1505 aa18.8■□□□□ 0.6
COPS7A-219ENST00000544316 SNAPC4Q5SXM2 1469 aa18.79■□□□□ 0.6
COPS7A-219ENST00000544316 SYNJ1O43426 1573 aa18.78■□□□□ 0.6
COPS7A-219ENST00000544316 ARAP1Q96P48 1450 aa18.76■□□□□ 0.59
COPS7A-219ENST00000544316 SYNJ2O15056 1496 aa18.75■□□□□ 0.59
COPS7A-219ENST00000544316 GAPVD1Q14C86 1478 aa18.72■□□□□ 0.59
COPS7A-219ENST00000544316 TRHP20396 242 aaPredicted RBP18.72■□□□□ 0.59
COPS7A-219ENST00000544316 CLASP1Q7Z460 1538 aa18.72■□□□□ 0.59
COPS7A-219ENST00000544316 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
COPS7A-219ENST00000544316 SUPT5HO00267 1087 aaKnown RBP18.68■□□□□ 0.58
COPS7A-219ENST00000544316 PBRM1Q86U86 1689 aa18.66■□□□□ 0.58
COPS7A-219ENST00000544316 WRNQ14191 1432 aaPredicted RBP eCLIP18.65■□□□□ 0.58
COPS7A-219ENST00000544316 AEBP2Q6ZN18 517 aaPredicted RBP18.63■□□□□ 0.57
COPS7A-219ENST00000544316 ABCA5Q8WWZ7 1642 aa18.62■□□□□ 0.57
COPS7A-219ENST00000544316 TOP2BQ02880 1626 aa18.55■□□□□ 0.56
COPS7A-219ENST00000544316 BIVM-ERCC5R4GMW8 1640 aa18.54■□□□□ 0.56
COPS7A-219ENST00000544316 GRIN2AQ12879 1464 aa18.53■□□□□ 0.56
COPS7A-219ENST00000544316 FHAD1B1AJZ9 1412 aa18.5■□□□□ 0.55
COPS7A-219ENST00000544316 ERICH3Q5RHP9 1530 aa18.49■□□□□ 0.55
COPS7A-219ENST00000544316 NUP160Q12769 1436 aa18.49■□□□□ 0.55
COPS7A-219ENST00000544316 ADAMTS12P58397 1594 aa18.47■□□□□ 0.55
COPS7A-219ENST00000544316 CEP170Q5SW79 1584 aa18.41■□□□□ 0.54
COPS7A-219ENST00000544316 SHROOM2Q13796 1616 aa18.39■□□□□ 0.53
COPS7A-219ENST00000544316 JPH4Q96JJ6 628 aa18.34■□□□□ 0.53
COPS7A-219ENST00000544316 ERCC6L2Q5T890 1561 aa18.33■□□□□ 0.52
COPS7A-219ENST00000544316 PRG4Q92954 1404 aaPredicted RBP18.31■□□□□ 0.52
COPS7A-219ENST00000544316 NPM1P06748 294 aaKnown RBP eCLIP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms