RNA–Protein interactions for RNA: ENST00000544293.1

C2CD3-220, Transcript of C2 calcium dependent domain containing 3, humanhuman

TSL 2

Gene C2CD3, Length 731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C2CD3-220ENST00000544293 NISCHQ9Y2I1 1504 aa24.32■■□□□ 1.48
C2CD3-220ENST00000544293 ABCC9O60706 1549 aa22.27■■□□□ 1.16
C2CD3-220ENST00000544293 CCDC180Q9P1Z9 1646 aa21.73■■□□□ 1.07
C2CD3-220ENST00000544293 DNAJC5BQ9UF47 199 aa21.43■■□□□ 1.02
C2CD3-220ENST00000544293 RB1CC1Q8TDY2 1594 aa20.92■□□□□ 0.94
C2CD3-220ENST00000544293 PABPN1Q86U42 306 aaKnown RBP eCLIP20.82■□□□□ 0.92
C2CD3-220ENST00000544293 NACADO15069 1562 aa20.75■□□□□ 0.91
C2CD3-220ENST00000544293 DCAF8L2P0C7V8 631 aa20.73■□□□□ 0.91
C2CD3-220ENST00000544293 BICRAQ9NZM4 1560 aa20.46■□□□□ 0.87
C2CD3-220ENST00000544293 MYO15BQ96JP2 1530 aa20.41■□□□□ 0.86
C2CD3-220ENST00000544293 UNC13AQ9UPW8 1703 aa20.35■□□□□ 0.85
C2CD3-220ENST00000544293 CECR2Q9BXF3 1484 aa20.09■□□□□ 0.81
C2CD3-220ENST00000544293 ZCCHC6Q5VYS8 1495 aaKnown RBP20.07■□□□□ 0.8
C2CD3-220ENST00000544293 AEBP2Q6ZN18 517 aaPredicted RBP20.07■□□□□ 0.8
C2CD3-220ENST00000544293 DCAF1Q9Y4B6 1507 aa20.03■□□□□ 0.8
C2CD3-220ENST00000544293 CC2D2AQ9P2K1 1620 aa20.03■□□□□ 0.8
C2CD3-220ENST00000544293 SHROOM4Q9ULL8 1493 aa20.02■□□□□ 0.8
C2CD3-220ENST00000544293 EIF4G1Q04637 1599 aaKnown RBP19.92■□□□□ 0.78
C2CD3-220ENST00000544293 SCRIBQ14160 1630 aa19.88■□□□□ 0.77
C2CD3-220ENST00000544293 DNAJC5Q9H3Z4 198 aa19.79■□□□□ 0.76
C2CD3-220ENST00000544293 CHIC1Q5VXU3 224 aa19.78■□□□□ 0.76
C2CD3-220ENST00000544293 NCAPD3P42695 1498 aa19.29■□□□□ 0.68
C2CD3-220ENST00000544293 CUX2O14529 1486 aa19.25■□□□□ 0.67
C2CD3-220ENST00000544293 ATAD2BQ9ULI0 1458 aa19.18■□□□□ 0.66
C2CD3-220ENST00000544293 ERCC6Q03468 1493 aa19.15■□□□□ 0.66
C2CD3-220ENST00000544293 NESP48681 1621 aa19.08■□□□□ 0.65
C2CD3-220ENST00000544293 HMGXB3Q12766 1538 aa18.98■□□□□ 0.63
C2CD3-220ENST00000544293 SMARCA2P51531 1590 aa18.96■□□□□ 0.63
C2CD3-220ENST00000544293 SMARCA4P51532 1647 aa18.95■□□□□ 0.62
C2CD3-220ENST00000544293 BAZ1BQ9UIG0 1483 aaKnown RBP18.87■□□□□ 0.61
C2CD3-220ENST00000544293 THOC2Q8NI27 1593 aaKnown RBP18.81■□□□□ 0.6
C2CD3-220ENST00000544293 PEG3Q9GZU2 1588 aa18.81■□□□□ 0.6
C2CD3-220ENST00000544293 BAZ1AQ9NRL2 1556 aaPredicted RBP18.81■□□□□ 0.6
C2CD3-220ENST00000544293 MROH2BQ7Z745 1585 aa18.77■□□□□ 0.6
C2CD3-220ENST00000544293 LAMC3Q9Y6N6 1575 aa18.73■□□□□ 0.59
C2CD3-220ENST00000544293 PDS5BQ9NTI5 1447 aa18.73■□□□□ 0.59
C2CD3-220ENST00000544293 TRIM41Q8WV44 630 aa18.71■□□□□ 0.59
C2CD3-220ENST00000544293 CADPSQ9ULU8 1353 aa18.7■□□□□ 0.58
C2CD3-220ENST00000544293 KIF21AQ7Z4S6 1674 aa18.6■□□□□ 0.57
C2CD3-220ENST00000544293 MRC2Q9UBG0 1479 aa18.57■□□□□ 0.56
C2CD3-220ENST00000544293 WDR62O43379 1518 aa18.53■□□□□ 0.56
C2CD3-220ENST00000544293 OSCARQ8IYS5 282 aa18.44■□□□□ 0.54
C2CD3-220ENST00000544293 WIZO95785 1651 aa18.43■□□□□ 0.54
C2CD3-220ENST00000544293 FANCD2Q9BXW9 1451 aa18.41■□□□□ 0.54
C2CD3-220ENST00000544293 CFTRP13569 1480 aa18.39■□□□□ 0.54
C2CD3-220ENST00000544293 CEP164Q9UPV0 1460 aa18.39■□□□□ 0.54
C2CD3-220ENST00000544293 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
C2CD3-220ENST00000544293 URB2Q14146 1524 aaKnown RBP18.32■□□□□ 0.52
C2CD3-220ENST00000544293 TOP2AP11388 1531 aaKnown RBP18.18■□□□□ 0.5
C2CD3-220ENST00000544293 ZNF608Q9ULD9 1512 aaPredicted RBP18.18■□□□□ 0.5
C2CD3-220ENST00000544293 CCDC88BA6NC98 1476 aa18.09■□□□□ 0.49
C2CD3-220ENST00000544293 RIMBP3CA6NJZ7 1639 aa18.09■□□□□ 0.49
C2CD3-220ENST00000544293 RIMBP3BA6NNM3 1639 aa18.09■□□□□ 0.49
C2CD3-220ENST00000544293 RIMBP3Q9UFD9 1639 aa18.09■□□□□ 0.49
C2CD3-220ENST00000544293 IFT140Q96RY7 1462 aa18.08■□□□□ 0.49
C2CD3-220ENST00000544293 CYB5RLQ6IPT4 315 aa18.06■□□□□ 0.48
C2CD3-220ENST00000544293 ARHGEF11O15085 1522 aa18.06■□□□□ 0.48
C2CD3-220ENST00000544293 TOPBP1Q92547 1522 aa18.03■□□□□ 0.48
C2CD3-220ENST00000544293 AQRO60306 1485 aaKnown RBP eCLIP17.99■□□□□ 0.47
C2CD3-220ENST00000544293 ARAP1Q96P48 1450 aa17.9■□□□□ 0.46
C2CD3-220ENST00000544293 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
C2CD3-220ENST00000544293 FBLN2P98095 1184 aa17.88■□□□□ 0.45
C2CD3-220ENST00000544293 EIF4G3O43432 1585 aaKnown RBP17.87■□□□□ 0.45
C2CD3-220ENST00000544293 TRHP20396 242 aaPredicted RBP17.87■□□□□ 0.45
C2CD3-220ENST00000544293 DNMBPQ6XZF7 1577 aa17.86■□□□□ 0.45
C2CD3-220ENST00000544293 TARBP1Q13395 1621 aaKnown RBP17.86■□□□□ 0.45
C2CD3-220ENST00000544293 POLA1P09884 1462 aaPredicted RBP17.84■□□□□ 0.45
C2CD3-220ENST00000544293 RAD54L2Q9Y4B4 1467 aa17.84■□□□□ 0.45
C2CD3-220ENST00000544293 TDRD9Q8NDG6 1382 aaKnown RBP17.84■□□□□ 0.45
C2CD3-220ENST00000544293 PRDM2Q13029 1718 aa17.81■□□□□ 0.44
C2CD3-220ENST00000544293 SOGA1O94964 1423 aa17.79■□□□□ 0.44
C2CD3-220ENST00000544293 CHD1O14646 1710 aa17.73■□□□□ 0.43
C2CD3-220ENST00000544293 SNAPC4Q5SXM2 1469 aa17.7■□□□□ 0.42
C2CD3-220ENST00000544293 CHMP7Q8WUX9 453 aaPredicted RBP17.7■□□□□ 0.42
C2CD3-220ENST00000544293 CLASP1Q7Z460 1538 aa17.68■□□□□ 0.42
C2CD3-220ENST00000544293 FGD5Q6ZNL6 1462 aa17.67■□□□□ 0.42
C2CD3-220ENST00000544293 CUX1P39880 1505 aa17.63■□□□□ 0.41
C2CD3-220ENST00000544293 GRIN2BQ13224 1484 aa17.61■□□□□ 0.41
C2CD3-220ENST00000544293 MAGI1Q96QZ7 1491 aaPredicted RBP17.61■□□□□ 0.41
C2CD3-220ENST00000544293 SYNJ2O15056 1496 aa17.58■□□□□ 0.41
C2CD3-220ENST00000544293 SYNJ1O43426 1573 aa17.54■□□□□ 0.4
C2CD3-220ENST00000544293 GAPVD1Q14C86 1478 aa17.54■□□□□ 0.4
C2CD3-220ENST00000544293 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
C2CD3-220ENST00000544293 ABCA10Q8WWZ4 1543 aa17.46■□□□□ 0.39
C2CD3-220ENST00000544293 ERCC6L2Q5T890 1561 aa17.45■□□□□ 0.38
C2CD3-220ENST00000544293 NUP160Q12769 1436 aa17.39■□□□□ 0.38
C2CD3-220ENST00000544293 GRIN2AQ12879 1464 aa17.38■□□□□ 0.37
C2CD3-220ENST00000544293 ABCA5Q8WWZ7 1642 aa17.38■□□□□ 0.37
C2CD3-220ENST00000544293 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
C2CD3-220ENST00000544293 CEP170Q5SW79 1584 aa17.32■□□□□ 0.36
C2CD3-220ENST00000544293 WRNQ14191 1432 aaPredicted RBP eCLIP17.32■□□□□ 0.36
C2CD3-220ENST00000544293 PBRM1Q86U86 1689 aa17.32■□□□□ 0.36
C2CD3-220ENST00000544293 FHAD1B1AJZ9 1412 aa17.3■□□□□ 0.36
C2CD3-220ENST00000544293 JPH4Q96JJ6 628 aa17.28■□□□□ 0.36
C2CD3-220ENST00000544293 SUPT5HO00267 1087 aaKnown RBP17.27■□□□□ 0.36
C2CD3-220ENST00000544293 ADAMTS12P58397 1594 aa17.26■□□□□ 0.35
C2CD3-220ENST00000544293 PRG4Q92954 1404 aaPredicted RBP17.24■□□□□ 0.35
C2CD3-220ENST00000544293 SHROOM2Q13796 1616 aa17.24■□□□□ 0.35
C2CD3-220ENST00000544293 FAM69CQ0P6D2 419 aa17.19■□□□□ 0.34
C2CD3-220ENST00000544293 ERICH3Q5RHP9 1530 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms