RNA–Protein interactions for RNA: ENST00000544276.1

LMO3-230, Transcript of LIM domain only 3, humanhuman

TSL 3

Gene LMO3, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-230ENST00000544276 NISCHQ9Y2I1 1504 aa26.28■■□□□ 1.8
LMO3-230ENST00000544276 CCDC180Q9P1Z9 1646 aa23.5■■□□□ 1.35
LMO3-230ENST00000544276 ABCC9O60706 1549 aa23.43■■□□□ 1.34
LMO3-230ENST00000544276 RB1CC1Q8TDY2 1594 aa22.37■■□□□ 1.17
LMO3-230ENST00000544276 NACADO15069 1562 aa22.27■■□□□ 1.16
LMO3-230ENST00000544276 DCAF8L2P0C7V8 631 aa22.08■■□□□ 1.13
LMO3-230ENST00000544276 MYO15BQ96JP2 1530 aa22.06■■□□□ 1.12
LMO3-230ENST00000544276 DNAJC5BQ9UF47 199 aa21.98■■□□□ 1.11
LMO3-230ENST00000544276 PABPN1Q86U42 306 aaKnown RBP eCLIP21.85■■□□□ 1.09
LMO3-230ENST00000544276 ZCCHC6Q5VYS8 1495 aaKnown RBP21.8■■□□□ 1.08
LMO3-230ENST00000544276 DCAF1Q9Y4B6 1507 aa21.77■■□□□ 1.08
LMO3-230ENST00000544276 BICRAQ9NZM4 1560 aa21.7■■□□□ 1.06
LMO3-230ENST00000544276 UNC13AQ9UPW8 1703 aa21.69■■□□□ 1.06
LMO3-230ENST00000544276 SHROOM4Q9ULL8 1493 aa21.54■■□□□ 1.04
LMO3-230ENST00000544276 SCRIBQ14160 1630 aa21.35■■□□□ 1.01
LMO3-230ENST00000544276 EIF4G1Q04637 1599 aaKnown RBP21.17■□□□□ 0.98
LMO3-230ENST00000544276 CC2D2AQ9P2K1 1620 aa21.16■□□□□ 0.98
LMO3-230ENST00000544276 CECR2Q9BXF3 1484 aa21.15■□□□□ 0.98
LMO3-230ENST00000544276 NCAPD3P42695 1498 aa20.61■□□□□ 0.89
LMO3-230ENST00000544276 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
LMO3-230ENST00000544276 SMARCA2P51531 1590 aa20.44■□□□□ 0.86
LMO3-230ENST00000544276 SMARCA4P51532 1647 aa20.43■□□□□ 0.86
LMO3-230ENST00000544276 HMGXB3Q12766 1538 aa20.41■□□□□ 0.86
LMO3-230ENST00000544276 BAZ1AQ9NRL2 1556 aaPredicted RBP20.39■□□□□ 0.85
LMO3-230ENST00000544276 PEG3Q9GZU2 1588 aa20.31■□□□□ 0.84
LMO3-230ENST00000544276 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
LMO3-230ENST00000544276 CUX2O14529 1486 aa20.26■□□□□ 0.83
LMO3-230ENST00000544276 ERCC6Q03468 1493 aa20.25■□□□□ 0.83
LMO3-230ENST00000544276 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
LMO3-230ENST00000544276 DNAJC5Q9H3Z4 198 aa20.2■□□□□ 0.82
LMO3-230ENST00000544276 NESP48681 1621 aa20.14■□□□□ 0.81
LMO3-230ENST00000544276 LAMC3Q9Y6N6 1575 aa20.06■□□□□ 0.8
LMO3-230ENST00000544276 PDS5BQ9NTI5 1447 aa20■□□□□ 0.79
LMO3-230ENST00000544276 CADPSQ9ULU8 1353 aa19.97■□□□□ 0.79
LMO3-230ENST00000544276 THOC2Q8NI27 1593 aaKnown RBP19.92■□□□□ 0.78
LMO3-230ENST00000544276 WIZO95785 1651 aa19.9■□□□□ 0.78
LMO3-230ENST00000544276 RSF1Q96T23 1441 aaPredicted RBP19.86■□□□□ 0.77
LMO3-230ENST00000544276 KIF21AQ7Z4S6 1674 aa19.8■□□□□ 0.76
LMO3-230ENST00000544276 MRC2Q9UBG0 1479 aa19.78■□□□□ 0.76
LMO3-230ENST00000544276 CFTRP13569 1480 aa19.75■□□□□ 0.75
LMO3-230ENST00000544276 TOP2AP11388 1531 aaKnown RBP19.74■□□□□ 0.75
LMO3-230ENST00000544276 WDR62O43379 1518 aa19.72■□□□□ 0.75
LMO3-230ENST00000544276 CEP164Q9UPV0 1460 aa19.7■□□□□ 0.74
LMO3-230ENST00000544276 FANCD2Q9BXW9 1451 aa19.69■□□□□ 0.74
LMO3-230ENST00000544276 AEBP2Q6ZN18 517 aaPredicted RBP19.59■□□□□ 0.73
LMO3-230ENST00000544276 CCDC88BA6NC98 1476 aa19.52■□□□□ 0.72
LMO3-230ENST00000544276 URB2Q14146 1524 aaKnown RBP19.51■□□□□ 0.71
LMO3-230ENST00000544276 OSCARQ8IYS5 282 aa19.36■□□□□ 0.69
LMO3-230ENST00000544276 PRDM2Q13029 1718 aa19.36■□□□□ 0.69
LMO3-230ENST00000544276 ABCC8Q09428 1581 aa19.34■□□□□ 0.69
LMO3-230ENST00000544276 IFT140Q96RY7 1462 aa19.34■□□□□ 0.69
LMO3-230ENST00000544276 TOPBP1Q92547 1522 aa19.31■□□□□ 0.68
LMO3-230ENST00000544276 ZNF608Q9ULD9 1512 aaPredicted RBP19.25■□□□□ 0.67
LMO3-230ENST00000544276 DNMBPQ6XZF7 1577 aa19.23■□□□□ 0.67
LMO3-230ENST00000544276 TRIM41Q8WV44 630 aa19.23■□□□□ 0.67
LMO3-230ENST00000544276 POLA1P09884 1462 aaPredicted RBP19.13■□□□□ 0.65
LMO3-230ENST00000544276 TARBP1Q13395 1621 aaKnown RBP19.11■□□□□ 0.65
LMO3-230ENST00000544276 EIF4G3O43432 1585 aaKnown RBP19.1■□□□□ 0.65
LMO3-230ENST00000544276 AQRO60306 1485 aaKnown RBP eCLIP19.09■□□□□ 0.65
LMO3-230ENST00000544276 SOGA1O94964 1423 aa19.07■□□□□ 0.64
LMO3-230ENST00000544276 RAD54L2Q9Y4B4 1467 aa19.03■□□□□ 0.64
LMO3-230ENST00000544276 FGD5Q6ZNL6 1462 aa18.99■□□□□ 0.63
LMO3-230ENST00000544276 TDRD9Q8NDG6 1382 aaKnown RBP18.99■□□□□ 0.63
LMO3-230ENST00000544276 WDR97A6NE52 1622 aa18.99■□□□□ 0.63
LMO3-230ENST00000544276 CUX1P39880 1505 aa18.99■□□□□ 0.63
LMO3-230ENST00000544276 ARHGEF11O15085 1522 aa18.98■□□□□ 0.63
LMO3-230ENST00000544276 RIMBP3CA6NJZ7 1639 aa18.97■□□□□ 0.63
LMO3-230ENST00000544276 RIMBP3BA6NNM3 1639 aa18.97■□□□□ 0.63
LMO3-230ENST00000544276 RIMBP3Q9UFD9 1639 aa18.97■□□□□ 0.63
LMO3-230ENST00000544276 SUPT5HO00267 1087 aaKnown RBP18.95■□□□□ 0.62
LMO3-230ENST00000544276 FBLN2P98095 1184 aa18.93■□□□□ 0.62
LMO3-230ENST00000544276 GRIN2BQ13224 1484 aa18.9■□□□□ 0.62
LMO3-230ENST00000544276 MAGI1Q96QZ7 1491 aaPredicted RBP18.9■□□□□ 0.62
LMO3-230ENST00000544276 SNAPC4Q5SXM2 1469 aa18.89■□□□□ 0.61
LMO3-230ENST00000544276 CHIC1Q5VXU3 224 aa18.88■□□□□ 0.61
LMO3-230ENST00000544276 CHD1O14646 1710 aa18.87■□□□□ 0.61
LMO3-230ENST00000544276 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
LMO3-230ENST00000544276 CYB5RLQ6IPT4 315 aa18.85■□□□□ 0.61
LMO3-230ENST00000544276 ABCA10Q8WWZ4 1543 aa18.83■□□□□ 0.6
LMO3-230ENST00000544276 SYNJ2O15056 1496 aa18.83■□□□□ 0.6
LMO3-230ENST00000544276 GAPVD1Q14C86 1478 aa18.82■□□□□ 0.6
LMO3-230ENST00000544276 ARAP1Q96P48 1450 aa18.8■□□□□ 0.6
LMO3-230ENST00000544276 CLASP1Q7Z460 1538 aa18.79■□□□□ 0.6
LMO3-230ENST00000544276 WRNQ14191 1432 aaPredicted RBP eCLIP18.78■□□□□ 0.6
LMO3-230ENST00000544276 SYNJ1O43426 1573 aa18.77■□□□□ 0.6
LMO3-230ENST00000544276 ABCA5Q8WWZ7 1642 aa18.73■□□□□ 0.59
LMO3-230ENST00000544276 TOP2BQ02880 1626 aa18.7■□□□□ 0.58
LMO3-230ENST00000544276 PBRM1Q86U86 1689 aa18.67■□□□□ 0.58
LMO3-230ENST00000544276 BIVM-ERCC5R4GMW8 1640 aa18.67■□□□□ 0.58
LMO3-230ENST00000544276 GRIN2AQ12879 1464 aa18.64■□□□□ 0.57
LMO3-230ENST00000544276 FHAD1B1AJZ9 1412 aa18.61■□□□□ 0.57
LMO3-230ENST00000544276 NUP160Q12769 1436 aa18.6■□□□□ 0.57
LMO3-230ENST00000544276 ERICH3Q5RHP9 1530 aa18.59■□□□□ 0.57
LMO3-230ENST00000544276 TRHP20396 242 aaPredicted RBP18.59■□□□□ 0.57
LMO3-230ENST00000544276 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
LMO3-230ENST00000544276 CEP170Q5SW79 1584 aa18.51■□□□□ 0.55
LMO3-230ENST00000544276 SHROOM2Q13796 1616 aa18.45■□□□□ 0.54
LMO3-230ENST00000544276 ERCC6L2Q5T890 1561 aa18.44■□□□□ 0.54
LMO3-230ENST00000544276 JPH4Q96JJ6 628 aa18.42■□□□□ 0.54
LMO3-230ENST00000544276 IGF1RP08069 1367 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms