RNA–Protein interactions for RNA: ENST00000543449.1

NPIPB4-217, Transcript of nuclear pore complex interacting protein family member B4, humanhuman

TSL 3

Gene NPIPB4, Length 685 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB4-217ENST00000543449 NISCHQ9Y2I1 1504 aa25.09■■□□□ 1.61
NPIPB4-217ENST00000543449 CCDC180Q9P1Z9 1646 aa22.41■■□□□ 1.18
NPIPB4-217ENST00000543449 ABCC9O60706 1549 aa22.01■■□□□ 1.11
NPIPB4-217ENST00000543449 RB1CC1Q8TDY2 1594 aa21.19■□□□□ 0.98
NPIPB4-217ENST00000543449 NACADO15069 1562 aa21.14■□□□□ 0.98
NPIPB4-217ENST00000543449 DCAF8L2P0C7V8 631 aa21.02■□□□□ 0.96
NPIPB4-217ENST00000543449 MYO15BQ96JP2 1530 aa21.01■□□□□ 0.95
NPIPB4-217ENST00000543449 ZCCHC6Q5VYS8 1495 aaKnown RBP20.87■□□□□ 0.93
NPIPB4-217ENST00000543449 DCAF1Q9Y4B6 1507 aa20.83■□□□□ 0.92
NPIPB4-217ENST00000543449 UNC13AQ9UPW8 1703 aa20.54■□□□□ 0.88
NPIPB4-217ENST00000543449 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.87
NPIPB4-217ENST00000543449 BICRAQ9NZM4 1560 aa20.43■□□□□ 0.86
NPIPB4-217ENST00000543449 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
NPIPB4-217ENST00000543449 SCRIBQ14160 1630 aa20.34■□□□□ 0.85
NPIPB4-217ENST00000543449 DNAJC5BQ9UF47 199 aa20.27■□□□□ 0.84
NPIPB4-217ENST00000543449 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
NPIPB4-217ENST00000543449 CC2D2AQ9P2K1 1620 aa19.91■□□□□ 0.78
NPIPB4-217ENST00000543449 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
NPIPB4-217ENST00000543449 BAZ1AQ9NRL2 1556 aaPredicted RBP19.51■□□□□ 0.71
NPIPB4-217ENST00000543449 NCAPD3P42695 1498 aa19.49■□□□□ 0.71
NPIPB4-217ENST00000543449 SMARCA4P51532 1647 aa19.48■□□□□ 0.71
NPIPB4-217ENST00000543449 SMARCA2P51531 1590 aa19.47■□□□□ 0.71
NPIPB4-217ENST00000543449 ATAD2BQ9ULI0 1458 aa19.44■□□□□ 0.7
NPIPB4-217ENST00000543449 HMGXB3Q12766 1538 aa19.39■□□□□ 0.69
NPIPB4-217ENST00000543449 PEG3Q9GZU2 1588 aa19.34■□□□□ 0.69
NPIPB4-217ENST00000543449 BAZ1BQ9UIG0 1483 aaKnown RBP19.29■□□□□ 0.68
NPIPB4-217ENST00000543449 MROH2BQ7Z745 1585 aa19.27■□□□□ 0.68
NPIPB4-217ENST00000543449 ERCC6Q03468 1493 aa19.06■□□□□ 0.64
NPIPB4-217ENST00000543449 RSF1Q96T23 1441 aaPredicted RBP19.04■□□□□ 0.64
NPIPB4-217ENST00000543449 WIZO95785 1651 aa19.04■□□□□ 0.64
NPIPB4-217ENST00000543449 LAMC3Q9Y6N6 1575 aa19.01■□□□□ 0.63
NPIPB4-217ENST00000543449 CUX2O14529 1486 aa18.96■□□□□ 0.63
NPIPB4-217ENST00000543449 NESP48681 1621 aa18.95■□□□□ 0.62
NPIPB4-217ENST00000543449 PDS5BQ9NTI5 1447 aa18.93■□□□□ 0.62
NPIPB4-217ENST00000543449 CADPSQ9ULU8 1353 aa18.93■□□□□ 0.62
NPIPB4-217ENST00000543449 TOP2AP11388 1531 aaKnown RBP18.92■□□□□ 0.62
NPIPB4-217ENST00000543449 AEBP2Q6ZN18 517 aaPredicted RBP18.91■□□□□ 0.62
NPIPB4-217ENST00000543449 CFTRP13569 1480 aa18.76■□□□□ 0.59
NPIPB4-217ENST00000543449 THOC2Q8NI27 1593 aaKnown RBP18.74■□□□□ 0.59
NPIPB4-217ENST00000543449 KIF21AQ7Z4S6 1674 aa18.72■□□□□ 0.59
NPIPB4-217ENST00000543449 MRC2Q9UBG0 1479 aa18.69■□□□□ 0.58
NPIPB4-217ENST00000543449 CEP164Q9UPV0 1460 aa18.69■□□□□ 0.58
NPIPB4-217ENST00000543449 FANCD2Q9BXW9 1451 aa18.67■□□□□ 0.58
NPIPB4-217ENST00000543449 CCDC88BA6NC98 1476 aa18.65■□□□□ 0.58
NPIPB4-217ENST00000543449 WDR62O43379 1518 aa18.61■□□□□ 0.57
NPIPB4-217ENST00000543449 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
NPIPB4-217ENST00000543449 DNAJC5Q9H3Z4 198 aa18.52■□□□□ 0.56
NPIPB4-217ENST00000543449 ABCC8Q09428 1581 aa18.46■□□□□ 0.55
NPIPB4-217ENST00000543449 URB2Q14146 1524 aaKnown RBP18.44■□□□□ 0.54
NPIPB4-217ENST00000543449 SUPT5HO00267 1087 aaKnown RBP18.42■□□□□ 0.54
NPIPB4-217ENST00000543449 TOPBP1Q92547 1522 aa18.34■□□□□ 0.53
NPIPB4-217ENST00000543449 DNMBPQ6XZF7 1577 aa18.33■□□□□ 0.52
NPIPB4-217ENST00000543449 IFT140Q96RY7 1462 aa18.33■□□□□ 0.52
NPIPB4-217ENST00000543449 POLA1P09884 1462 aaPredicted RBP18.17■□□□□ 0.5
NPIPB4-217ENST00000543449 ZNF608Q9ULD9 1512 aaPredicted RBP18.14■□□□□ 0.49
NPIPB4-217ENST00000543449 OSCARQ8IYS5 282 aa18.14■□□□□ 0.49
NPIPB4-217ENST00000543449 SOGA1O94964 1423 aa18.13■□□□□ 0.49
NPIPB4-217ENST00000543449 TARBP1Q13395 1621 aaKnown RBP18.12■□□□□ 0.49
NPIPB4-217ENST00000543449 WDR97A6NE52 1622 aa18.11■□□□□ 0.49
NPIPB4-217ENST00000543449 CUX1P39880 1505 aa18.1■□□□□ 0.49
NPIPB4-217ENST00000543449 FGD5Q6ZNL6 1462 aa18.1■□□□□ 0.49
NPIPB4-217ENST00000543449 EIF4G3O43432 1585 aaKnown RBP18.09■□□□□ 0.49
NPIPB4-217ENST00000543449 RAD54L2Q9Y4B4 1467 aa18.05■□□□□ 0.48
NPIPB4-217ENST00000543449 AQRO60306 1485 aaKnown RBP eCLIP18.04■□□□□ 0.489e-14■■■□□ 18.6
NPIPB4-217ENST00000543449 CHIC1Q5VXU3 224 aa18.01■□□□□ 0.47
NPIPB4-217ENST00000543449 WRNQ14191 1432 aaPredicted RBP eCLIP18■□□□□ 0.47
NPIPB4-217ENST00000543449 TDRD9Q8NDG6 1382 aaKnown RBP18■□□□□ 0.47
NPIPB4-217ENST00000543449 GRIN2BQ13224 1484 aa17.96■□□□□ 0.47
NPIPB4-217ENST00000543449 ABCA10Q8WWZ4 1543 aa17.96■□□□□ 0.47
NPIPB4-217ENST00000543449 TOP2BQ02880 1626 aa17.95■□□□□ 0.46
NPIPB4-217ENST00000543449 MAGI1Q96QZ7 1491 aaPredicted RBP17.94■□□□□ 0.46
NPIPB4-217ENST00000543449 BIVM-ERCC5R4GMW8 1640 aa17.94■□□□□ 0.46
NPIPB4-217ENST00000543449 GAPVD1Q14C86 1478 aa17.91■□□□□ 0.46
NPIPB4-217ENST00000543449 FBLN2P98095 1184 aa17.91■□□□□ 0.46
NPIPB4-217ENST00000543449 SNAPC4Q5SXM2 1469 aa17.9■□□□□ 0.46
NPIPB4-217ENST00000543449 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
NPIPB4-217ENST00000543449 SYNJ1O43426 1573 aa17.87■□□□□ 0.45
NPIPB4-217ENST00000543449 CHD1O14646 1710 aa17.86■□□□□ 0.45
NPIPB4-217ENST00000543449 SYNJ2O15056 1496 aa17.85■□□□□ 0.45
NPIPB4-217ENST00000543449 ABCA5Q8WWZ7 1642 aa17.85■□□□□ 0.45
NPIPB4-217ENST00000543449 PBRM1Q86U86 1689 aa17.82■□□□□ 0.44
NPIPB4-217ENST00000543449 TRIM41Q8WV44 630 aa17.79■□□□□ 0.44
NPIPB4-217ENST00000543449 ARHGEF11O15085 1522 aa17.77■□□□□ 0.43
NPIPB4-217ENST00000543449 ERICH3Q5RHP9 1530 aa17.76■□□□□ 0.43
NPIPB4-217ENST00000543449 RIMBP3CA6NJZ7 1639 aa17.76■□□□□ 0.43
NPIPB4-217ENST00000543449 RIMBP3BA6NNM3 1639 aa17.76■□□□□ 0.43
NPIPB4-217ENST00000543449 RIMBP3Q9UFD9 1639 aa17.76■□□□□ 0.43
NPIPB4-217ENST00000543449 FHAD1B1AJZ9 1412 aa17.73■□□□□ 0.43
NPIPB4-217ENST00000543449 CLASP1Q7Z460 1538 aa17.72■□□□□ 0.43
NPIPB4-217ENST00000543449 ADAMTS12P58397 1594 aa17.7■□□□□ 0.42
NPIPB4-217ENST00000543449 GRIN2AQ12879 1464 aa17.69■□□□□ 0.42
NPIPB4-217ENST00000543449 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
NPIPB4-217ENST00000543449 NUP160Q12769 1436 aa17.64■□□□□ 0.41
NPIPB4-217ENST00000543449 CYB5RLQ6IPT4 315 aa17.62■□□□□ 0.41
NPIPB4-217ENST00000543449 ARAP1Q96P48 1450 aa17.59■□□□□ 0.41
NPIPB4-217ENST00000543449 IGF1RP08069 1367 aa17.56■□□□□ 0.4
NPIPB4-217ENST00000543449 CUL7Q14999 1698 aa17.55■□□□□ 0.4
NPIPB4-217ENST00000543449 CEP170Q5SW79 1584 aa17.55■□□□□ 0.4
NPIPB4-217ENST00000543449 CARMIL1Q5VZK9 1371 aa17.49■□□□□ 0.39
NPIPB4-217ENST00000543449 SHROOM2Q13796 1616 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms