RNA–Protein interactions for RNA: ENST00000543368.1

NPIPB3-212, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 3

Gene NPIPB3, Length 685 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-212ENST00000543368 NISCHQ9Y2I1 1504 aa25.09■■□□□ 1.61
NPIPB3-212ENST00000543368 CCDC180Q9P1Z9 1646 aa22.41■■□□□ 1.18
NPIPB3-212ENST00000543368 ABCC9O60706 1549 aa22.01■■□□□ 1.11
NPIPB3-212ENST00000543368 RB1CC1Q8TDY2 1594 aa21.19■□□□□ 0.98
NPIPB3-212ENST00000543368 NACADO15069 1562 aa21.14■□□□□ 0.98
NPIPB3-212ENST00000543368 DCAF8L2P0C7V8 631 aa21.02■□□□□ 0.96
NPIPB3-212ENST00000543368 MYO15BQ96JP2 1530 aa21.01■□□□□ 0.95
NPIPB3-212ENST00000543368 ZCCHC6Q5VYS8 1495 aaKnown RBP20.87■□□□□ 0.93
NPIPB3-212ENST00000543368 DCAF1Q9Y4B6 1507 aa20.83■□□□□ 0.92
NPIPB3-212ENST00000543368 UNC13AQ9UPW8 1703 aa20.54■□□□□ 0.88
NPIPB3-212ENST00000543368 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.87
NPIPB3-212ENST00000543368 BICRAQ9NZM4 1560 aa20.43■□□□□ 0.86
NPIPB3-212ENST00000543368 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
NPIPB3-212ENST00000543368 SCRIBQ14160 1630 aa20.34■□□□□ 0.85
NPIPB3-212ENST00000543368 DNAJC5BQ9UF47 199 aa20.27■□□□□ 0.84
NPIPB3-212ENST00000543368 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
NPIPB3-212ENST00000543368 CC2D2AQ9P2K1 1620 aa19.91■□□□□ 0.78
NPIPB3-212ENST00000543368 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
NPIPB3-212ENST00000543368 BAZ1AQ9NRL2 1556 aaPredicted RBP19.51■□□□□ 0.71
NPIPB3-212ENST00000543368 NCAPD3P42695 1498 aa19.49■□□□□ 0.71
NPIPB3-212ENST00000543368 SMARCA4P51532 1647 aa19.48■□□□□ 0.71
NPIPB3-212ENST00000543368 SMARCA2P51531 1590 aa19.47■□□□□ 0.71
NPIPB3-212ENST00000543368 ATAD2BQ9ULI0 1458 aa19.44■□□□□ 0.7
NPIPB3-212ENST00000543368 HMGXB3Q12766 1538 aa19.39■□□□□ 0.69
NPIPB3-212ENST00000543368 PEG3Q9GZU2 1588 aa19.34■□□□□ 0.69
NPIPB3-212ENST00000543368 BAZ1BQ9UIG0 1483 aaKnown RBP19.29■□□□□ 0.68
NPIPB3-212ENST00000543368 MROH2BQ7Z745 1585 aa19.27■□□□□ 0.68
NPIPB3-212ENST00000543368 ERCC6Q03468 1493 aa19.06■□□□□ 0.64
NPIPB3-212ENST00000543368 RSF1Q96T23 1441 aaPredicted RBP19.04■□□□□ 0.64
NPIPB3-212ENST00000543368 WIZO95785 1651 aa19.04■□□□□ 0.64
NPIPB3-212ENST00000543368 LAMC3Q9Y6N6 1575 aa19.01■□□□□ 0.63
NPIPB3-212ENST00000543368 CUX2O14529 1486 aa18.96■□□□□ 0.63
NPIPB3-212ENST00000543368 NESP48681 1621 aa18.95■□□□□ 0.62
NPIPB3-212ENST00000543368 PDS5BQ9NTI5 1447 aa18.93■□□□□ 0.62
NPIPB3-212ENST00000543368 CADPSQ9ULU8 1353 aa18.93■□□□□ 0.62
NPIPB3-212ENST00000543368 TOP2AP11388 1531 aaKnown RBP18.92■□□□□ 0.62
NPIPB3-212ENST00000543368 AEBP2Q6ZN18 517 aaPredicted RBP18.91■□□□□ 0.62
NPIPB3-212ENST00000543368 CFTRP13569 1480 aa18.76■□□□□ 0.59
NPIPB3-212ENST00000543368 THOC2Q8NI27 1593 aaKnown RBP18.74■□□□□ 0.59
NPIPB3-212ENST00000543368 KIF21AQ7Z4S6 1674 aa18.72■□□□□ 0.59
NPIPB3-212ENST00000543368 MRC2Q9UBG0 1479 aa18.69■□□□□ 0.58
NPIPB3-212ENST00000543368 CEP164Q9UPV0 1460 aa18.69■□□□□ 0.58
NPIPB3-212ENST00000543368 FANCD2Q9BXW9 1451 aa18.67■□□□□ 0.58
NPIPB3-212ENST00000543368 CCDC88BA6NC98 1476 aa18.65■□□□□ 0.58
NPIPB3-212ENST00000543368 WDR62O43379 1518 aa18.61■□□□□ 0.57
NPIPB3-212ENST00000543368 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
NPIPB3-212ENST00000543368 DNAJC5Q9H3Z4 198 aa18.52■□□□□ 0.56
NPIPB3-212ENST00000543368 ABCC8Q09428 1581 aa18.46■□□□□ 0.55
NPIPB3-212ENST00000543368 URB2Q14146 1524 aaKnown RBP18.44■□□□□ 0.54
NPIPB3-212ENST00000543368 SUPT5HO00267 1087 aaKnown RBP18.42■□□□□ 0.54
NPIPB3-212ENST00000543368 TOPBP1Q92547 1522 aa18.34■□□□□ 0.53
NPIPB3-212ENST00000543368 DNMBPQ6XZF7 1577 aa18.33■□□□□ 0.52
NPIPB3-212ENST00000543368 IFT140Q96RY7 1462 aa18.33■□□□□ 0.52
NPIPB3-212ENST00000543368 POLA1P09884 1462 aaPredicted RBP18.17■□□□□ 0.5
NPIPB3-212ENST00000543368 ZNF608Q9ULD9 1512 aaPredicted RBP18.14■□□□□ 0.49
NPIPB3-212ENST00000543368 OSCARQ8IYS5 282 aa18.14■□□□□ 0.49
NPIPB3-212ENST00000543368 SOGA1O94964 1423 aa18.13■□□□□ 0.49
NPIPB3-212ENST00000543368 TARBP1Q13395 1621 aaKnown RBP18.12■□□□□ 0.49
NPIPB3-212ENST00000543368 WDR97A6NE52 1622 aa18.11■□□□□ 0.49
NPIPB3-212ENST00000543368 CUX1P39880 1505 aa18.1■□□□□ 0.49
NPIPB3-212ENST00000543368 FGD5Q6ZNL6 1462 aa18.1■□□□□ 0.49
NPIPB3-212ENST00000543368 EIF4G3O43432 1585 aaKnown RBP18.09■□□□□ 0.49
NPIPB3-212ENST00000543368 RAD54L2Q9Y4B4 1467 aa18.05■□□□□ 0.48
NPIPB3-212ENST00000543368 AQRO60306 1485 aaKnown RBP eCLIP18.04■□□□□ 0.48
NPIPB3-212ENST00000543368 CHIC1Q5VXU3 224 aa18.01■□□□□ 0.47
NPIPB3-212ENST00000543368 WRNQ14191 1432 aaPredicted RBP eCLIP18■□□□□ 0.47
NPIPB3-212ENST00000543368 TDRD9Q8NDG6 1382 aaKnown RBP18■□□□□ 0.47
NPIPB3-212ENST00000543368 GRIN2BQ13224 1484 aa17.96■□□□□ 0.47
NPIPB3-212ENST00000543368 ABCA10Q8WWZ4 1543 aa17.96■□□□□ 0.47
NPIPB3-212ENST00000543368 TOP2BQ02880 1626 aa17.95■□□□□ 0.46
NPIPB3-212ENST00000543368 MAGI1Q96QZ7 1491 aaPredicted RBP17.94■□□□□ 0.46
NPIPB3-212ENST00000543368 BIVM-ERCC5R4GMW8 1640 aa17.94■□□□□ 0.46
NPIPB3-212ENST00000543368 GAPVD1Q14C86 1478 aa17.91■□□□□ 0.46
NPIPB3-212ENST00000543368 FBLN2P98095 1184 aa17.91■□□□□ 0.46
NPIPB3-212ENST00000543368 SNAPC4Q5SXM2 1469 aa17.9■□□□□ 0.46
NPIPB3-212ENST00000543368 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
NPIPB3-212ENST00000543368 SYNJ1O43426 1573 aa17.87■□□□□ 0.45
NPIPB3-212ENST00000543368 CHD1O14646 1710 aa17.86■□□□□ 0.45
NPIPB3-212ENST00000543368 SYNJ2O15056 1496 aa17.85■□□□□ 0.45
NPIPB3-212ENST00000543368 ABCA5Q8WWZ7 1642 aa17.85■□□□□ 0.45
NPIPB3-212ENST00000543368 PBRM1Q86U86 1689 aa17.82■□□□□ 0.44
NPIPB3-212ENST00000543368 TRIM41Q8WV44 630 aa17.79■□□□□ 0.44
NPIPB3-212ENST00000543368 ARHGEF11O15085 1522 aa17.77■□□□□ 0.43
NPIPB3-212ENST00000543368 ERICH3Q5RHP9 1530 aa17.76■□□□□ 0.43
NPIPB3-212ENST00000543368 RIMBP3CA6NJZ7 1639 aa17.76■□□□□ 0.43
NPIPB3-212ENST00000543368 RIMBP3BA6NNM3 1639 aa17.76■□□□□ 0.43
NPIPB3-212ENST00000543368 RIMBP3Q9UFD9 1639 aa17.76■□□□□ 0.43
NPIPB3-212ENST00000543368 FHAD1B1AJZ9 1412 aa17.73■□□□□ 0.43
NPIPB3-212ENST00000543368 CLASP1Q7Z460 1538 aa17.72■□□□□ 0.43
NPIPB3-212ENST00000543368 ADAMTS12P58397 1594 aa17.7■□□□□ 0.42
NPIPB3-212ENST00000543368 GRIN2AQ12879 1464 aa17.69■□□□□ 0.42
NPIPB3-212ENST00000543368 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
NPIPB3-212ENST00000543368 NUP160Q12769 1436 aa17.64■□□□□ 0.41
NPIPB3-212ENST00000543368 CYB5RLQ6IPT4 315 aa17.62■□□□□ 0.41
NPIPB3-212ENST00000543368 ARAP1Q96P48 1450 aa17.59■□□□□ 0.41
NPIPB3-212ENST00000543368 IGF1RP08069 1367 aa17.56■□□□□ 0.4
NPIPB3-212ENST00000543368 CUL7Q14999 1698 aa17.55■□□□□ 0.4
NPIPB3-212ENST00000543368 CEP170Q5SW79 1584 aa17.55■□□□□ 0.4
NPIPB3-212ENST00000543368 CARMIL1Q5VZK9 1371 aa17.49■□□□□ 0.39
NPIPB3-212ENST00000543368 SHROOM2Q13796 1616 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms