RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 NISCHQ9Y2I1 1504 aa30.22■■■□□ 2.43
COPA-205ENST00000541366 ABCC9O60706 1549 aa27.8■■■□□ 2.04
COPA-205ENST00000541366 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
COPA-205ENST00000541366 DNAJC5BQ9UF47 199 aa26.53■■□□□ 1.84
COPA-205ENST00000541366 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
COPA-205ENST00000541366 NACADO15069 1562 aa25.86■■□□□ 1.73
COPA-205ENST00000541366 PABPN1Q86U42 306 aaKnown RBP eCLIP25.86■■□□□ 1.73
COPA-205ENST00000541366 DCAF8L2P0C7V8 631 aa25.81■■□□□ 1.72
COPA-205ENST00000541366 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
COPA-205ENST00000541366 BICRAQ9NZM4 1560 aa25.49■■□□□ 1.67
COPA-205ENST00000541366 MYO15BQ96JP2 1530 aa25.32■■□□□ 1.64
COPA-205ENST00000541366 CECR2Q9BXF3 1484 aa25.04■■□□□ 1.6
COPA-205ENST00000541366 CC2D2AQ9P2K1 1620 aa25.04■■□□□ 1.6
COPA-205ENST00000541366 ZCCHC6Q5VYS8 1495 aaKnown RBP24.95■■□□□ 1.58
COPA-205ENST00000541366 SHROOM4Q9ULL8 1493 aa24.94■■□□□ 1.58
COPA-205ENST00000541366 SCRIBQ14160 1630 aa24.9■■□□□ 1.58
COPA-205ENST00000541366 EIF4G1Q04637 1599 aaKnown RBP24.87■■□□□ 1.57
COPA-205ENST00000541366 DCAF1Q9Y4B6 1507 aa24.86■■□□□ 1.57
COPA-205ENST00000541366 AEBP2Q6ZN18 517 aaPredicted RBP24.84■■□□□ 1.57
COPA-205ENST00000541366 DNAJC5Q9H3Z4 198 aa24.57■■□□□ 1.52
COPA-205ENST00000541366 CHIC1Q5VXU3 224 aa24.11■■□□□ 1.45
COPA-205ENST00000541366 CUX2O14529 1486 aa24.02■■□□□ 1.44
COPA-205ENST00000541366 ERCC6Q03468 1493 aa23.97■■□□□ 1.43
COPA-205ENST00000541366 NCAPD3P42695 1498 aa23.91■■□□□ 1.42
COPA-205ENST00000541366 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
COPA-205ENST00000541366 NESP48681 1621 aa23.78■■□□□ 1.4
COPA-205ENST00000541366 HMGXB3Q12766 1538 aa23.67■■□□□ 1.38
COPA-205ENST00000541366 SMARCA4P51532 1647 aa23.66■■□□□ 1.38
COPA-205ENST00000541366 SMARCA2P51531 1590 aa23.66■■□□□ 1.38
COPA-205ENST00000541366 THOC2Q8NI27 1593 aaKnown RBP23.55■■□□□ 1.36
COPA-205ENST00000541366 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
COPA-205ENST00000541366 BAZ1AQ9NRL2 1556 aaPredicted RBP23.45■■□□□ 1.34
COPA-205ENST00000541366 LAMC3Q9Y6N6 1575 aa23.41■■□□□ 1.34
COPA-205ENST00000541366 KIF21AQ7Z4S6 1674 aa23.41■■□□□ 1.34
COPA-205ENST00000541366 PEG3Q9GZU2 1588 aa23.4■■□□□ 1.34
COPA-205ENST00000541366 TRIM41Q8WV44 630 aa23.39■■□□□ 1.33
COPA-205ENST00000541366 MROH2BQ7Z745 1585 aa23.33■■□□□ 1.33
COPA-205ENST00000541366 PDS5BQ9NTI5 1447 aa23.31■■□□□ 1.32
COPA-205ENST00000541366 CADPSQ9ULU8 1353 aa23.18■■□□□ 1.3
COPA-205ENST00000541366 MRC2Q9UBG0 1479 aa23.16■■□□□ 1.3
COPA-205ENST00000541366 WDR62O43379 1518 aa23.1■■□□□ 1.29
COPA-205ENST00000541366 WIZO95785 1651 aa23.03■■□□□ 1.28
COPA-205ENST00000541366 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
COPA-205ENST00000541366 FANCD2Q9BXW9 1451 aa22.94■■□□□ 1.26
COPA-205ENST00000541366 OSCARQ8IYS5 282 aa22.91■■□□□ 1.26
COPA-205ENST00000541366 CFTRP13569 1480 aa22.83■■□□□ 1.25
COPA-205ENST00000541366 URB2Q14146 1524 aaKnown RBP22.81■■□□□ 1.24
COPA-205ENST00000541366 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
COPA-205ENST00000541366 RIMBP3CA6NJZ7 1639 aa22.68■■□□□ 1.22
COPA-205ENST00000541366 RIMBP3BA6NNM3 1639 aa22.68■■□□□ 1.22
COPA-205ENST00000541366 RIMBP3Q9UFD9 1639 aa22.68■■□□□ 1.22
COPA-205ENST00000541366 TOP2AP11388 1531 aaKnown RBP22.65■■□□□ 1.22
COPA-205ENST00000541366 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
COPA-205ENST00000541366 ARHGEF11O15085 1522 aa22.55■■□□□ 1.2
COPA-205ENST00000541366 IFT140Q96RY7 1462 aa22.52■■□□□ 1.2
COPA-205ENST00000541366 PRDM2Q13029 1718 aa22.51■■□□□ 1.19
COPA-205ENST00000541366 CYB5RLQ6IPT4 315 aa22.46■■□□□ 1.19
COPA-205ENST00000541366 TOPBP1Q92547 1522 aa22.46■■□□□ 1.19
COPA-205ENST00000541366 CCDC88BA6NC98 1476 aa22.45■■□□□ 1.18
COPA-205ENST00000541366 EIF4G3O43432 1585 aaKnown RBP22.41■■□□□ 1.18
COPA-205ENST00000541366 AQRO60306 1485 aaKnown RBP eCLIP22.35■■□□□ 1.171e-7■■■□□ 17.9
COPA-205ENST00000541366 TRHP20396 242 aaPredicted RBP22.35■■□□□ 1.17
COPA-205ENST00000541366 CHD1O14646 1710 aa22.34■■□□□ 1.17
COPA-205ENST00000541366 ARAP1Q96P48 1450 aa22.33■■□□□ 1.16
COPA-205ENST00000541366 FBLN2P98095 1184 aa22.31■■□□□ 1.16
COPA-205ENST00000541366 DNMBPQ6XZF7 1577 aa22.3■■□□□ 1.16
COPA-205ENST00000541366 ABCC8Q09428 1581 aa22.29■■□□□ 1.16
COPA-205ENST00000541366 TARBP1Q13395 1621 aaKnown RBP22.28■■□□□ 1.16
COPA-205ENST00000541366 POLA1P09884 1462 aaPredicted RBP22.21■■□□□ 1.15
COPA-205ENST00000541366 RAD54L2Q9Y4B4 1467 aa22.19■■□□□ 1.14
COPA-205ENST00000541366 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
COPA-205ENST00000541366 SOGA1O94964 1423 aa22.09■■□□□ 1.13
COPA-205ENST00000541366 SNAPC4Q5SXM2 1469 aa22.08■■□□□ 1.12
COPA-205ENST00000541366 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
COPA-205ENST00000541366 CHMP7Q8WUX9 453 aaPredicted RBP22.03■■□□□ 1.12
COPA-205ENST00000541366 FGD5Q6ZNL6 1462 aa22.01■■□□□ 1.11
COPA-205ENST00000541366 SYNJ1O43426 1573 aa21.96■■□□□ 1.11
COPA-205ENST00000541366 MAGI1Q96QZ7 1491 aaPredicted RBP21.94■■□□□ 1.1
COPA-205ENST00000541366 CUX1P39880 1505 aa21.94■■□□□ 1.1
COPA-205ENST00000541366 GRIN2BQ13224 1484 aa21.92■■□□□ 1.1
COPA-205ENST00000541366 WDR97A6NE52 1622 aa21.91■■□□□ 1.1
COPA-205ENST00000541366 SYNJ2O15056 1496 aa21.9■■□□□ 1.1
COPA-205ENST00000541366 GAPVD1Q14C86 1478 aa21.87■■□□□ 1.09
COPA-205ENST00000541366 PBRM1Q86U86 1689 aa21.82■■□□□ 1.08
COPA-205ENST00000541366 ERCC6L2Q5T890 1561 aa21.77■■□□□ 1.08
COPA-205ENST00000541366 ABCA5Q8WWZ7 1642 aa21.71■■□□□ 1.07
COPA-205ENST00000541366 ABCA10Q8WWZ4 1543 aa21.7■■□□□ 1.06
COPA-205ENST00000541366 GRIN2AQ12879 1464 aa21.65■■□□□ 1.06
COPA-205ENST00000541366 CEP170Q5SW79 1584 aa21.63■■□□□ 1.05
COPA-205ENST00000541366 NUP160Q12769 1436 aa21.59■■□□□ 1.05
COPA-205ENST00000541366 ADAMTS12P58397 1594 aa21.58■■□□□ 1.05
COPA-205ENST00000541366 SHROOM2Q13796 1616 aa21.53■■□□□ 1.04
COPA-205ENST00000541366 WRNQ14191 1432 aaPredicted RBP eCLIP21.53■■□□□ 1.04
COPA-205ENST00000541366 KIF13AQ9H1H9 1805 aa21.52■■□□□ 1.04
COPA-205ENST00000541366 FHAD1B1AJZ9 1412 aa21.49■■□□□ 1.03
COPA-205ENST00000541366 PRG4Q92954 1404 aaPredicted RBP21.46■■□□□ 1.03
COPA-205ENST00000541366 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
COPA-205ENST00000541366 TOP2BQ02880 1626 aa21.42■■□□□ 1.02
COPA-205ENST00000541366 BIVM-ERCC5R4GMW8 1640 aa21.41■■□□□ 1.02
COPA-205ENST00000541366 JPH4Q96JJ6 628 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms