RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 NISCHQ9Y2I1 1504 aa29.22■■■□□ 2.27
SMAD3-204ENST00000540846 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
SMAD3-204ENST00000540846 ABCC9O60706 1549 aa24.61■■□□□ 1.53
SMAD3-204ENST00000540846 ZCCHC6Q5VYS8 1495 aaKnown RBP24.49■■□□□ 1.51
SMAD3-204ENST00000540846 DCAF1Q9Y4B6 1507 aa24.22■■□□□ 1.47
SMAD3-204ENST00000540846 MYO15BQ96JP2 1530 aa24.11■■□□□ 1.45
SMAD3-204ENST00000540846 NACADO15069 1562 aa24.04■■□□□ 1.44
SMAD3-204ENST00000540846 DCAF8L2P0C7V8 631 aa23.99■■□□□ 1.43
SMAD3-204ENST00000540846 RB1CC1Q8TDY2 1594 aa23.93■■□□□ 1.42
SMAD3-204ENST00000540846 UNC13AQ9UPW8 1703 aa23.54■■□□□ 1.36
SMAD3-204ENST00000540846 SCRIBQ14160 1630 aa23.53■■□□□ 1.36
SMAD3-204ENST00000540846 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
SMAD3-204ENST00000540846 BICRAQ9NZM4 1560 aa23.29■■□□□ 1.32
SMAD3-204ENST00000540846 PABPN1Q86U42 306 aaKnown RBP eCLIP23.03■■□□□ 1.28
SMAD3-204ENST00000540846 CECR2Q9BXF3 1484 aa22.72■■□□□ 1.23
SMAD3-204ENST00000540846 BAZ1AQ9NRL2 1556 aaPredicted RBP22.6■■□□□ 1.21
SMAD3-204ENST00000540846 SMARCA4P51532 1647 aa22.59■■□□□ 1.21
SMAD3-204ENST00000540846 EIF4G1Q04637 1599 aaKnown RBP22.56■■□□□ 1.2
SMAD3-204ENST00000540846 MROH2BQ7Z745 1585 aa22.56■■□□□ 1.2
SMAD3-204ENST00000540846 RSF1Q96T23 1441 aaPredicted RBP22.47■■□□□ 1.19
SMAD3-204ENST00000540846 PEG3Q9GZU2 1588 aa22.38■■□□□ 1.17
SMAD3-204ENST00000540846 WIZO95785 1651 aa22.36■■□□□ 1.17
SMAD3-204ENST00000540846 CC2D2AQ9P2K1 1620 aa22.33■■□□□ 1.17
SMAD3-204ENST00000540846 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
SMAD3-204ENST00000540846 SMARCA2P51531 1590 aa22.27■■□□□ 1.16
SMAD3-204ENST00000540846 SUPT5HO00267 1087 aaKnown RBP22.19■■□□□ 1.14
SMAD3-204ENST00000540846 NCAPD3P42695 1498 aa22.18■■□□□ 1.14
SMAD3-204ENST00000540846 HMGXB3Q12766 1538 aa22.16■■□□□ 1.14
SMAD3-204ENST00000540846 TOP2AP11388 1531 aaKnown RBP22.13■■□□□ 1.13
SMAD3-204ENST00000540846 DNAJC5BQ9UF47 199 aa22.1■■□□□ 1.13
SMAD3-204ENST00000540846 BAZ1BQ9UIG0 1483 aaKnown RBP22.1■■□□□ 1.13
SMAD3-204ENST00000540846 CCDC88BA6NC98 1476 aa21.84■■□□□ 1.09
SMAD3-204ENST00000540846 CFTRP13569 1480 aa21.56■■□□□ 1.04
SMAD3-204ENST00000540846 PRDM2Q13029 1718 aa21.54■■□□□ 1.04
SMAD3-204ENST00000540846 CADPSQ9ULU8 1353 aa21.52■■□□□ 1.04
SMAD3-204ENST00000540846 LAMC3Q9Y6N6 1575 aa21.51■■□□□ 1.03
SMAD3-204ENST00000540846 NESP48681 1621 aa21.51■■□□□ 1.03
SMAD3-204ENST00000540846 KIF21AQ7Z4S6 1674 aa21.31■■□□□ 1
SMAD3-204ENST00000540846 FANCD2Q9BXW9 1451 aa21.3■■□□□ 1
SMAD3-204ENST00000540846 PDS5BQ9NTI5 1447 aa21.27■□□□□ 0.99
SMAD3-204ENST00000540846 ABCC8Q09428 1581 aa21.25■□□□□ 0.99
SMAD3-204ENST00000540846 CEP164Q9UPV0 1460 aa21.22■□□□□ 0.99
SMAD3-204ENST00000540846 CHIC1Q5VXU3 224 aa21.14■□□□□ 0.98
SMAD3-204ENST00000540846 SYNJ1O43426 1573 aa21.13■□□□□ 0.97
SMAD3-204ENST00000540846 CUX1P39880 1505 aa21.13■□□□□ 0.97
SMAD3-204ENST00000540846 WRNQ14191 1432 aaPredicted RBP eCLIP21.13■□□□□ 0.97
SMAD3-204ENST00000540846 BIVM-ERCC5R4GMW8 1640 aa21.12■□□□□ 0.97
SMAD3-204ENST00000540846 THOC2Q8NI27 1593 aaKnown RBP21.11■□□□□ 0.97
SMAD3-204ENST00000540846 URB2Q14146 1524 aaKnown RBP21.1■□□□□ 0.97
SMAD3-204ENST00000540846 ERCC6Q03468 1493 aa21.1■□□□□ 0.97
SMAD3-204ENST00000540846 TOP2BQ02880 1626 aa21.09■□□□□ 0.97
SMAD3-204ENST00000540846 DNMBPQ6XZF7 1577 aa21.08■□□□□ 0.97
SMAD3-204ENST00000540846 MRC2Q9UBG0 1479 aa21.08■□□□□ 0.96
SMAD3-204ENST00000540846 TOPBP1Q92547 1522 aa21.05■□□□□ 0.96
SMAD3-204ENST00000540846 WDR62O43379 1518 aa21.04■□□□□ 0.96
SMAD3-204ENST00000540846 FGD5Q6ZNL6 1462 aa20.93■□□□□ 0.94
SMAD3-204ENST00000540846 POLA1P09884 1462 aaPredicted RBP20.92■□□□□ 0.94
SMAD3-204ENST00000540846 TRIM41Q8WV44 630 aa20.91■□□□□ 0.94
SMAD3-204ENST00000540846 CUX2O14529 1486 aa20.85■□□□□ 0.93
SMAD3-204ENST00000540846 WDR97A6NE52 1622 aa20.84■□□□□ 0.93
SMAD3-204ENST00000540846 TARBP1Q13395 1621 aaKnown RBP20.83■□□□□ 0.93
SMAD3-204ENST00000540846 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
SMAD3-204ENST00000540846 SOGA1O94964 1423 aa20.77■□□□□ 0.91
SMAD3-204ENST00000540846 ABCA10Q8WWZ4 1543 aa20.76■□□□□ 0.91
SMAD3-204ENST00000540846 IFT140Q96RY7 1462 aa20.73■□□□□ 0.91
SMAD3-204ENST00000540846 RUSC2Q8N2Y8 1516 aa20.69■□□□□ 0.9
SMAD3-204ENST00000540846 ABCA5Q8WWZ7 1642 aa20.69■□□□□ 0.9
SMAD3-204ENST00000540846 ZNF608Q9ULD9 1512 aaPredicted RBP20.65■□□□□ 0.9
SMAD3-204ENST00000540846 EIF4G3O43432 1585 aaKnown RBP20.62■□□□□ 0.89
SMAD3-204ENST00000540846 KIF27Q86VH2 1401 aa20.61■□□□□ 0.89
SMAD3-204ENST00000540846 EEA1Q15075 1411 aa20.59■□□□□ 0.89
SMAD3-204ENST00000540846 TDRD9Q8NDG6 1382 aaKnown RBP20.59■□□□□ 0.89
SMAD3-204ENST00000540846 PBRM1Q86U86 1689 aa20.58■□□□□ 0.88
SMAD3-204ENST00000540846 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
SMAD3-204ENST00000540846 AQRO60306 1485 aaKnown RBP eCLIP20.56■□□□□ 0.881e-6■■■■□ 21.5
SMAD3-204ENST00000540846 ERICH3Q5RHP9 1530 aa20.52■□□□□ 0.88
SMAD3-204ENST00000540846 IGF1RP08069 1367 aa20.49■□□□□ 0.87
SMAD3-204ENST00000540846 GRIN2BQ13224 1484 aa20.48■□□□□ 0.87
SMAD3-204ENST00000540846 FAM9AQ8IZU1 332 aaPredicted RBP20.48■□□□□ 0.87
SMAD3-204ENST00000540846 CUL7Q14999 1698 aa20.46■□□□□ 0.87
SMAD3-204ENST00000540846 CSRNP3Q8WYN3 585 aa20.44■□□□□ 0.86
SMAD3-204ENST00000540846 PRXQ9BXM0 1461 aa20.43■□□□□ 0.86
SMAD3-204ENST00000540846 KIF21BO75037 1637 aa20.43■□□□□ 0.86
SMAD3-204ENST00000540846 ADAMTS12P58397 1594 aa20.43■□□□□ 0.86
SMAD3-204ENST00000540846 SNAPC4Q5SXM2 1469 aa20.4■□□□□ 0.86
SMAD3-204ENST00000540846 MAGI1Q96QZ7 1491 aaPredicted RBP20.38■□□□□ 0.85
SMAD3-204ENST00000540846 CARMIL1Q5VZK9 1371 aa20.35■□□□□ 0.85
SMAD3-204ENST00000540846 FHAD1B1AJZ9 1412 aa20.34■□□□□ 0.85
SMAD3-204ENST00000540846 RAPGEF2Q9Y4G8 1499 aa20.34■□□□□ 0.85
SMAD3-204ENST00000540846 SYNJ2O15056 1496 aa20.29■□□□□ 0.84
SMAD3-204ENST00000540846 LOC105371045A0A1W2PR82 267 aa20.29■□□□□ 0.84
SMAD3-204ENST00000540846 GOLGA3Q08378 1498 aa20.29■□□□□ 0.84
SMAD3-204ENST00000540846 CHD1O14646 1710 aa20.27■□□□□ 0.84
SMAD3-204ENST00000540846 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
SMAD3-204ENST00000540846 CTTNBP2Q8WZ74 1663 aa20.19■□□□□ 0.82
SMAD3-204ENST00000540846 CEP170Q5SW79 1584 aa20.17■□□□□ 0.82
SMAD3-204ENST00000540846 NUP160Q12769 1436 aa20.15■□□□□ 0.82
SMAD3-204ENST00000540846 EHMT2Q96KQ7 1210 aa20.15■□□□□ 0.82
SMAD3-204ENST00000540846 CHMP7Q8WUX9 453 aaPredicted RBP20.12■□□□□ 0.81
SMAD3-204ENST00000540846 TNIKQ9UKE5 1360 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms