RNA–Protein interactions for RNA: ENST00000540408.5

COPS7A-211, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 2

Gene COPS7A, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-211ENST00000540408 NISCHQ9Y2I1 1504 aa31.27■■■□□ 2.6
COPS7A-211ENST00000540408 ABCC9O60706 1549 aa28.29■■■□□ 2.12
COPS7A-211ENST00000540408 CCDC180Q9P1Z9 1646 aa28.09■■■□□ 2.09
COPS7A-211ENST00000540408 RB1CC1Q8TDY2 1594 aa26.87■■□□□ 1.89
COPS7A-211ENST00000540408 DNAJC5BQ9UF47 199 aa26.66■■□□□ 1.86
COPS7A-211ENST00000540408 NACADO15069 1562 aa26.65■■□□□ 1.86
COPS7A-211ENST00000540408 DCAF8L2P0C7V8 631 aa26.62■■□□□ 1.85
COPS7A-211ENST00000540408 PABPN1Q86U42 306 aaKnown RBP eCLIP26.36■■□□□ 1.81
COPS7A-211ENST00000540408 MYO15BQ96JP2 1530 aa26.22■■□□□ 1.79
COPS7A-211ENST00000540408 UNC13AQ9UPW8 1703 aa26.14■■□□□ 1.77
COPS7A-211ENST00000540408 BICRAQ9NZM4 1560 aa26■■□□□ 1.75
COPS7A-211ENST00000540408 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
COPS7A-211ENST00000540408 DCAF1Q9Y4B6 1507 aa25.82■■□□□ 1.72
COPS7A-211ENST00000540408 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
COPS7A-211ENST00000540408 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
COPS7A-211ENST00000540408 CECR2Q9BXF3 1484 aa25.52■■□□□ 1.68
COPS7A-211ENST00000540408 CC2D2AQ9P2K1 1620 aa25.52■■□□□ 1.68
COPS7A-211ENST00000540408 EIF4G1Q04637 1599 aaKnown RBP25.43■■□□□ 1.66
COPS7A-211ENST00000540408 DNAJC5Q9H3Z4 198 aa24.67■■□□□ 1.54
COPS7A-211ENST00000540408 NCAPD3P42695 1498 aa24.61■■□□□ 1.53
COPS7A-211ENST00000540408 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
COPS7A-211ENST00000540408 ATAD2BQ9ULI0 1458 aa24.5■■□□□ 1.51
COPS7A-211ENST00000540408 CUX2O14529 1486 aa24.46■■□□□ 1.51
COPS7A-211ENST00000540408 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
COPS7A-211ENST00000540408 SMARCA4P51532 1647 aa24.4■■□□□ 1.5
COPS7A-211ENST00000540408 HMGXB3Q12766 1538 aa24.38■■□□□ 1.49
COPS7A-211ENST00000540408 BAZ1AQ9NRL2 1556 aaPredicted RBP24.3■■□□□ 1.48
COPS7A-211ENST00000540408 BAZ1BQ9UIG0 1483 aaKnown RBP24.28■■□□□ 1.48
COPS7A-211ENST00000540408 NESP48681 1621 aa24.22■■□□□ 1.47
COPS7A-211ENST00000540408 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
COPS7A-211ENST00000540408 MROH2BQ7Z745 1585 aa24.07■■□□□ 1.44
COPS7A-211ENST00000540408 LAMC3Q9Y6N6 1575 aa24.07■■□□□ 1.44
COPS7A-211ENST00000540408 PDS5BQ9NTI5 1447 aa24■■□□□ 1.43
COPS7A-211ENST00000540408 THOC2Q8NI27 1593 aaKnown RBP23.97■■□□□ 1.43
COPS7A-211ENST00000540408 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
COPS7A-211ENST00000540408 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
COPS7A-211ENST00000540408 WIZO95785 1651 aa23.76■■□□□ 1.39
COPS7A-211ENST00000540408 MRC2Q9UBG0 1479 aa23.75■■□□□ 1.39
COPS7A-211ENST00000540408 WDR62O43379 1518 aa23.65■■□□□ 1.38
COPS7A-211ENST00000540408 CEP164Q9UPV0 1460 aa23.63■■□□□ 1.37
COPS7A-211ENST00000540408 FANCD2Q9BXW9 1451 aa23.59■■□□□ 1.37
COPS7A-211ENST00000540408 TRIM41Q8WV44 630 aa23.56■■□□□ 1.36
COPS7A-211ENST00000540408 RSF1Q96T23 1441 aaPredicted RBP23.55■■□□□ 1.36
COPS7A-211ENST00000540408 CFTRP13569 1480 aa23.54■■□□□ 1.36
COPS7A-211ENST00000540408 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
COPS7A-211ENST00000540408 OSCARQ8IYS5 282 aa23.42■■□□□ 1.34
COPS7A-211ENST00000540408 URB2Q14146 1524 aaKnown RBP23.35■■□□□ 1.33
COPS7A-211ENST00000540408 CCDC88BA6NC98 1476 aa23.24■■□□□ 1.31
COPS7A-211ENST00000540408 PRDM2Q13029 1718 aa23.22■■□□□ 1.31
COPS7A-211ENST00000540408 IFT140Q96RY7 1462 aa23.17■■□□□ 1.3
COPS7A-211ENST00000540408 ABCC8Q09428 1581 aa23.12■■□□□ 1.29
COPS7A-211ENST00000540408 TOPBP1Q92547 1522 aa23.1■■□□□ 1.29
COPS7A-211ENST00000540408 ZNF608Q9ULD9 1512 aaPredicted RBP23.09■■□□□ 1.29
COPS7A-211ENST00000540408 DNMBPQ6XZF7 1577 aa23■■□□□ 1.27
COPS7A-211ENST00000540408 RIMBP3CA6NJZ7 1639 aa22.98■■□□□ 1.27
COPS7A-211ENST00000540408 RIMBP3BA6NNM3 1639 aa22.98■■□□□ 1.27
COPS7A-211ENST00000540408 RIMBP3Q9UFD9 1639 aa22.98■■□□□ 1.27
COPS7A-211ENST00000540408 EIF4G3O43432 1585 aaKnown RBP22.94■■□□□ 1.26
COPS7A-211ENST00000540408 ARHGEF11O15085 1522 aa22.92■■□□□ 1.26
COPS7A-211ENST00000540408 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.26
COPS7A-211ENST00000540408 FBLN2P98095 1184 aa22.89■■□□□ 1.25
COPS7A-211ENST00000540408 TARBP1Q13395 1621 aaKnown RBP22.86■■□□□ 1.25
COPS7A-211ENST00000540408 CYB5RLQ6IPT4 315 aa22.86■■□□□ 1.25
COPS7A-211ENST00000540408 POLA1P09884 1462 aaPredicted RBP22.85■■□□□ 1.25
COPS7A-211ENST00000540408 SOGA1O94964 1423 aa22.82■■□□□ 1.24
COPS7A-211ENST00000540408 CHD1O14646 1710 aa22.79■■□□□ 1.24
COPS7A-211ENST00000540408 RAD54L2Q9Y4B4 1467 aa22.78■■□□□ 1.24
COPS7A-211ENST00000540408 TDRD9Q8NDG6 1382 aaKnown RBP22.76■■□□□ 1.23
COPS7A-211ENST00000540408 TRHP20396 242 aaPredicted RBP22.71■■□□□ 1.23
COPS7A-211ENST00000540408 CHMP7Q8WUX9 453 aaPredicted RBP22.7■■□□□ 1.22
COPS7A-211ENST00000540408 FGD5Q6ZNL6 1462 aa22.7■■□□□ 1.22
COPS7A-211ENST00000540408 WDR97A6NE52 1622 aa22.68■■□□□ 1.22
COPS7A-211ENST00000540408 ARAP1Q96P48 1450 aa22.66■■□□□ 1.22
COPS7A-211ENST00000540408 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
COPS7A-211ENST00000540408 CUX1P39880 1505 aa22.62■■□□□ 1.21
COPS7A-211ENST00000540408 MAGI1Q96QZ7 1491 aaPredicted RBP22.61■■□□□ 1.21
COPS7A-211ENST00000540408 GRIN2BQ13224 1484 aa22.6■■□□□ 1.21
COPS7A-211ENST00000540408 SYNJ1O43426 1573 aa22.58■■□□□ 1.2
COPS7A-211ENST00000540408 SYNJ2O15056 1496 aa22.54■■□□□ 1.2
COPS7A-211ENST00000540408 CLASP1Q7Z460 1538 aa22.53■■□□□ 1.2
COPS7A-211ENST00000540408 GAPVD1Q14C86 1478 aa22.51■■□□□ 1.19
COPS7A-211ENST00000540408 SUPT5HO00267 1087 aaKnown RBP22.49■■□□□ 1.19
COPS7A-211ENST00000540408 PBRM1Q86U86 1689 aa22.42■■□□□ 1.18
COPS7A-211ENST00000540408 ABCA10Q8WWZ4 1543 aa22.42■■□□□ 1.18
COPS7A-211ENST00000540408 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
COPS7A-211ENST00000540408 ABCA5Q8WWZ7 1642 aa22.35■■□□□ 1.17
COPS7A-211ENST00000540408 GRIN2AQ12879 1464 aa22.29■■□□□ 1.16
COPS7A-211ENST00000540408 TOP2BQ02880 1626 aa22.23■■□□□ 1.15
COPS7A-211ENST00000540408 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
COPS7A-211ENST00000540408 NUP160Q12769 1436 aa22.22■■□□□ 1.15
COPS7A-211ENST00000540408 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
COPS7A-211ENST00000540408 BIVM-ERCC5R4GMW8 1640 aa22.2■■□□□ 1.15
COPS7A-211ENST00000540408 AEBP2Q6ZN18 517 aaPredicted RBP22.19■■□□□ 1.14
COPS7A-211ENST00000540408 CEP170Q5SW79 1584 aa22.17■■□□□ 1.14
COPS7A-211ENST00000540408 ERICH3Q5RHP9 1530 aa22.16■■□□□ 1.14
COPS7A-211ENST00000540408 ERCC6L2Q5T890 1561 aa22.15■■□□□ 1.14
COPS7A-211ENST00000540408 SHROOM2Q13796 1616 aa22.09■■□□□ 1.13
COPS7A-211ENST00000540408 JPH4Q96JJ6 628 aa22.08■■□□□ 1.13
COPS7A-211ENST00000540408 PRG4Q92954 1404 aaPredicted RBP22.06■■□□□ 1.12
COPS7A-211ENST00000540408 NPM1P06748 294 aaKnown RBP eCLIP21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 141.3 ms