RNA–Protein interactions for RNA: ENST00000539449.2

RTN4IP1-204, Transcript of reticulon 4 interacting protein 1, humanhuman

TSL 2 BASIC

Gene RTN4IP1, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1-204ENST00000539449 NISCHQ9Y2I1 1504 aa21.27■■□□□ 1
RTN4IP1-204ENST00000539449 AEBP2Q6ZN18 517 aaPredicted RBP19.8■□□□□ 0.76
RTN4IP1-204ENST00000539449 ABCC9O60706 1549 aa19.68■□□□□ 0.74
RTN4IP1-204ENST00000539449 DNAJC5BQ9UF47 199 aa19.17■□□□□ 0.66
RTN4IP1-204ENST00000539449 CCDC180Q9P1Z9 1646 aa18.92■□□□□ 0.62
RTN4IP1-204ENST00000539449 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
RTN4IP1-204ENST00000539449 RB1CC1Q8TDY2 1594 aa18.38■□□□□ 0.53
RTN4IP1-204ENST00000539449 PABPN1Q86U42 306 aaKnown RBP eCLIP18.19■□□□□ 0.5
RTN4IP1-204ENST00000539449 DNAJC5Q9H3Z4 198 aa18.17■□□□□ 0.5
RTN4IP1-204ENST00000539449 NACADO15069 1562 aa18.06■□□□□ 0.48
RTN4IP1-204ENST00000539449 UNC13AQ9UPW8 1703 aa18.03■□□□□ 0.48
RTN4IP1-204ENST00000539449 BICRAQ9NZM4 1560 aa17.9■□□□□ 0.46
RTN4IP1-204ENST00000539449 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
RTN4IP1-204ENST00000539449 CECR2Q9BXF3 1484 aa17.81■□□□□ 0.44
RTN4IP1-204ENST00000539449 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
RTN4IP1-204ENST00000539449 CC2D2AQ9P2K1 1620 aa17.75■□□□□ 0.43
RTN4IP1-204ENST00000539449 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
RTN4IP1-204ENST00000539449 DCAF1Q9Y4B6 1507 aa17.54■□□□□ 0.4
RTN4IP1-204ENST00000539449 SHROOM4Q9ULL8 1493 aa17.54■□□□□ 0.4
RTN4IP1-204ENST00000539449 EIF4G1Q04637 1599 aaKnown RBP17.51■□□□□ 0.39
RTN4IP1-204ENST00000539449 CUX2O14529 1486 aa17.28■□□□□ 0.36
RTN4IP1-204ENST00000539449 SCRIBQ14160 1630 aa17.19■□□□□ 0.34
RTN4IP1-204ENST00000539449 TRIM41Q8WV44 630 aa17.04■□□□□ 0.32
RTN4IP1-204ENST00000539449 ERCC6Q03468 1493 aa17.04■□□□□ 0.32
RTN4IP1-204ENST00000539449 SENP3Q9H4L4 574 aaPredicted RBP16.88■□□□□ 0.29
RTN4IP1-204ENST00000539449 THOC2Q8NI27 1593 aaKnown RBP16.69■□□□□ 0.26
RTN4IP1-204ENST00000539449 NESP48681 1621 aa16.69■□□□□ 0.26
RTN4IP1-204ENST00000539449 NCAPD3P42695 1498 aa16.67■□□□□ 0.26
RTN4IP1-204ENST00000539449 PHF23Q9BUL5 403 aaPredicted RBP16.66■□□□□ 0.26
RTN4IP1-204ENST00000539449 SMARCA2P51531 1590 aa16.52■□□□□ 0.24
RTN4IP1-204ENST00000539449 ATAD2BQ9ULI0 1458 aa16.52■□□□□ 0.23
RTN4IP1-204ENST00000539449 HMGXB3Q12766 1538 aa16.49■□□□□ 0.23
RTN4IP1-204ENST00000539449 SUPT5HO00267 1087 aaKnown RBP16.48■□□□□ 0.23
RTN4IP1-204ENST00000539449 KIF21AQ7Z4S6 1674 aa16.47■□□□□ 0.23
RTN4IP1-204ENST00000539449 MROH2BQ7Z745 1585 aa16.47■□□□□ 0.23
RTN4IP1-204ENST00000539449 LAMC3Q9Y6N6 1575 aa16.44■□□□□ 0.22
RTN4IP1-204ENST00000539449 RSF1Q96T23 1441 aaPredicted RBP16.44■□□□□ 0.22
RTN4IP1-204ENST00000539449 BAZ1AQ9NRL2 1556 aaPredicted RBP16.41■□□□□ 0.22
RTN4IP1-204ENST00000539449 SMARCA4P51532 1647 aa16.41■□□□□ 0.22
RTN4IP1-204ENST00000539449 PDS5BQ9NTI5 1447 aa16.35■□□□□ 0.21
RTN4IP1-204ENST00000539449 WIZO95785 1651 aa16.34■□□□□ 0.21
RTN4IP1-204ENST00000539449 OSCARQ8IYS5 282 aa16.34■□□□□ 0.21
RTN4IP1-204ENST00000539449 BAZ1BQ9UIG0 1483 aaKnown RBP16.31■□□□□ 0.2
RTN4IP1-204ENST00000539449 MRC2Q9UBG0 1479 aa16.27■□□□□ 0.19
RTN4IP1-204ENST00000539449 RIMBP3CA6NJZ7 1639 aa16.27■□□□□ 0.19
RTN4IP1-204ENST00000539449 RIMBP3BA6NNM3 1639 aa16.27■□□□□ 0.19
RTN4IP1-204ENST00000539449 RIMBP3Q9UFD9 1639 aa16.27■□□□□ 0.19
RTN4IP1-204ENST00000539449 WDR62O43379 1518 aa16.26■□□□□ 0.19
RTN4IP1-204ENST00000539449 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
RTN4IP1-204ENST00000539449 CADPSQ9ULU8 1353 aa16.13■□□□□ 0.17
RTN4IP1-204ENST00000539449 ARHGEF11O15085 1522 aa16.11■□□□□ 0.17
RTN4IP1-204ENST00000539449 TOP2AP11388 1531 aaKnown RBP16.1■□□□□ 0.17
RTN4IP1-204ENST00000539449 TRHP20396 242 aaPredicted RBP16.1■□□□□ 0.17
RTN4IP1-204ENST00000539449 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
RTN4IP1-204ENST00000539449 CYB5RLQ6IPT4 315 aa16.02■□□□□ 0.16
RTN4IP1-204ENST00000539449 CCDC88BA6NC98 1476 aa15.96■□□□□ 0.14
RTN4IP1-204ENST00000539449 FANCD2Q9BXW9 1451 aa15.96■□□□□ 0.14
RTN4IP1-204ENST00000539449 ARAP1Q96P48 1450 aa15.9■□□□□ 0.14
RTN4IP1-204ENST00000539449 URB2Q14146 1524 aaKnown RBP15.89■□□□□ 0.13
RTN4IP1-204ENST00000539449 ZNF608Q9ULD9 1512 aaPredicted RBP15.82■□□□□ 0.12
RTN4IP1-204ENST00000539449 CFTRP13569 1480 aa15.78■□□□□ 0.12
RTN4IP1-204ENST00000539449 FOXD1Q16676 465 aa15.76■□□□□ 0.11
RTN4IP1-204ENST00000539449 CHD1O14646 1710 aa15.76■□□□□ 0.11
RTN4IP1-204ENST00000539449 IFT140Q96RY7 1462 aa15.75■□□□□ 0.11
RTN4IP1-204ENST00000539449 EIF4G3O43432 1585 aaKnown RBP15.7■□□□□ 0.1
RTN4IP1-204ENST00000539449 ILDR1Q86SU0 546 aaPredicted RBP15.66■□□□□ 0.1
RTN4IP1-204ENST00000539449 FBLN2P98095 1184 aa15.62■□□□□ 0.09
RTN4IP1-204ENST00000539449 PRDM2Q13029 1718 aa15.61■□□□□ 0.09
RTN4IP1-204ENST00000539449 ABCC8Q09428 1581 aa15.59■□□□□ 0.09
RTN4IP1-204ENST00000539449 AQRO60306 1485 aaKnown RBP eCLIP15.57■□□□□ 0.08
RTN4IP1-204ENST00000539449 TOPBP1Q92547 1522 aa15.57■□□□□ 0.08
RTN4IP1-204ENST00000539449 CLASP1Q7Z460 1538 aa15.53■□□□□ 0.08
RTN4IP1-204ENST00000539449 TARBP1Q13395 1621 aaKnown RBP15.51■□□□□ 0.07
RTN4IP1-204ENST00000539449 SYNJ1O43426 1573 aa15.45■□□□□ 0.06
RTN4IP1-204ENST00000539449 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
RTN4IP1-204ENST00000539449 WRNQ14191 1432 aaPredicted RBP eCLIP15.44■□□□□ 0.06
RTN4IP1-204ENST00000539449 GAPVD1Q14C86 1478 aa15.42■□□□□ 0.06
RTN4IP1-204ENST00000539449 CUX1P39880 1505 aa15.4■□□□□ 0.06
RTN4IP1-204ENST00000539449 SNAPC4Q5SXM2 1469 aa15.39■□□□□ 0.05
RTN4IP1-204ENST00000539449 BIVM-ERCC5R4GMW8 1640 aa15.38■□□□□ 0.05
RTN4IP1-204ENST00000539449 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
RTN4IP1-204ENST00000539449 POLA1P09884 1462 aaPredicted RBP15.36■□□□□ 0.05
RTN4IP1-204ENST00000539449 CHMP7Q8WUX9 453 aaPredicted RBP15.36■□□□□ 0.05
RTN4IP1-204ENST00000539449 TDRD9Q8NDG6 1382 aaKnown RBP15.35■□□□□ 0.05
RTN4IP1-204ENST00000539449 KIF13AQ9H1H9 1805 aa15.33■□□□□ 0.05
RTN4IP1-204ENST00000539449 RAD54L2Q9Y4B4 1467 aa15.33■□□□□ 0.04
RTN4IP1-204ENST00000539449 KDM4FA0A1W2PPD8 638 aa15.32■□□□□ 0.04
RTN4IP1-204ENST00000539449 MAGI1Q96QZ7 1491 aaPredicted RBP15.31■□□□□ 0.04
RTN4IP1-204ENST00000539449 WDR97A6NE52 1622 aa15.28■□□□□ 0.04
RTN4IP1-204ENST00000539449 SYNJ2O15056 1496 aa15.27■□□□□ 0.03
RTN4IP1-204ENST00000539449 SOGA1O94964 1423 aa15.26■□□□□ 0.03
RTN4IP1-204ENST00000539449 FAM9AQ8IZU1 332 aaPredicted RBP15.25■□□□□ 0.03
RTN4IP1-204ENST00000539449 RUSC2Q8N2Y8 1516 aa15.25■□□□□ 0.03
RTN4IP1-204ENST00000539449 ERCC6L2Q5T890 1561 aa15.24■□□□□ 0.03
RTN4IP1-204ENST00000539449 FGD5Q6ZNL6 1462 aa15.24■□□□□ 0.03
RTN4IP1-204ENST00000539449 GRIN2BQ13224 1484 aa15.22■□□□□ 0.03
RTN4IP1-204ENST00000539449 PBRM1Q86U86 1689 aa15.16■□□□□ 0.02
RTN4IP1-204ENST00000539449 KDM6BO15054 1643 aa15.14■□□□□ 0.01
RTN4IP1-204ENST00000539449 LOC105371045A0A1W2PR82 267 aa15.13■□□□□ 0.01
RTN4IP1-204ENST00000539449 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms