RNA–Protein interactions for RNA: ENST00000539121.1

USP30-210, Transcript of ubiquitin specific peptidase 30, humanhuman

TSL 4

Gene USP30, Length 534 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP30-210ENST00000539121 NISCHQ9Y2I1 1504 aa15.76■□□□□ 0.11
USP30-210ENST00000539121 AEBP2Q6ZN18 517 aaPredicted RBP15.02■□□□□ -0
USP30-210ENST00000539121 CHIC1Q5VXU3 224 aa14.61□□□□□ -0.07
USP30-210ENST00000539121 ABCC9O60706 1549 aa14.21□□□□□ -0.13
USP30-210ENST00000539121 CCDC180Q9P1Z9 1646 aa14.19□□□□□ -0.14
USP30-210ENST00000539121 RB1CC1Q8TDY2 1594 aa13.54□□□□□ -0.24
USP30-210ENST00000539121 NACADO15069 1562 aa13.45□□□□□ -0.26
USP30-210ENST00000539121 DNAJC5BQ9UF47 199 aa13.44□□□□□ -0.26
USP30-210ENST00000539121 DCAF8L2P0C7V8 631 aa13.3□□□□□ -0.28
USP30-210ENST00000539121 MYO15BQ96JP2 1530 aa13.29□□□□□ -0.28
USP30-210ENST00000539121 PABPN1Q86U42 306 aaKnown RBP eCLIP13.23□□□□□ -0.29
USP30-210ENST00000539121 UNC13AQ9UPW8 1703 aa13.19□□□□□ -0.3
USP30-210ENST00000539121 BICRAQ9NZM4 1560 aa13.13□□□□□ -0.31
USP30-210ENST00000539121 DCAF1Q9Y4B6 1507 aa13.06□□□□□ -0.32
USP30-210ENST00000539121 ZCCHC6Q5VYS8 1495 aaKnown RBP13.04□□□□□ -0.32
USP30-210ENST00000539121 SHROOM4Q9ULL8 1493 aa13.03□□□□□ -0.32
USP30-210ENST00000539121 SENP3Q9H4L4 574 aaPredicted RBP12.92□□□□□ -0.34
USP30-210ENST00000539121 CC2D2AQ9P2K1 1620 aa12.86□□□□□ -0.35
USP30-210ENST00000539121 CECR2Q9BXF3 1484 aa12.85□□□□□ -0.35
USP30-210ENST00000539121 SCRIBQ14160 1630 aa12.85□□□□□ -0.35
USP30-210ENST00000539121 EIF4G1Q04637 1599 aaKnown RBP12.82□□□□□ -0.36
USP30-210ENST00000539121 PHF23Q9BUL5 403 aaPredicted RBP12.76□□□□□ -0.37
USP30-210ENST00000539121 DNAJC5Q9H3Z4 198 aa12.46□□□□□ -0.41
USP30-210ENST00000539121 NCAPD3P42695 1498 aa12.43□□□□□ -0.42
USP30-210ENST00000539121 CUX2O14529 1486 aa12.36□□□□□ -0.43
USP30-210ENST00000539121 ATAD2BQ9ULI0 1458 aa12.34□□□□□ -0.43
USP30-210ENST00000539121 SMARCA2P51531 1590 aa12.33□□□□□ -0.44
USP30-210ENST00000539121 ERCC6Q03468 1493 aa12.31□□□□□ -0.44
USP30-210ENST00000539121 HMGXB3Q12766 1538 aa12.31□□□□□ -0.44
USP30-210ENST00000539121 SMARCA4P51532 1647 aa12.29□□□□□ -0.44
USP30-210ENST00000539121 BAZ1AQ9NRL2 1556 aaPredicted RBP12.25□□□□□ -0.45
USP30-210ENST00000539121 PEG3Q9GZU2 1588 aa12.22□□□□□ -0.45
USP30-210ENST00000539121 BAZ1BQ9UIG0 1483 aaKnown RBP12.21□□□□□ -0.45
USP30-210ENST00000539121 NESP48681 1621 aa12.19□□□□□ -0.46
USP30-210ENST00000539121 LAMC3Q9Y6N6 1575 aa12.15□□□□□ -0.46
USP30-210ENST00000539121 MROH2BQ7Z745 1585 aa12.12□□□□□ -0.47
USP30-210ENST00000539121 PDS5BQ9NTI5 1447 aa12.1□□□□□ -0.47
USP30-210ENST00000539121 THOC2Q8NI27 1593 aaKnown RBP12.09□□□□□ -0.47
USP30-210ENST00000539121 CADPSQ9ULU8 1353 aa12.04□□□□□ -0.48
USP30-210ENST00000539121 KIF21AQ7Z4S6 1674 aa12.03□□□□□ -0.48
USP30-210ENST00000539121 MRC2Q9UBG0 1479 aa11.95□□□□□ -0.5
USP30-210ENST00000539121 WIZO95785 1651 aa11.94□□□□□ -0.5
USP30-210ENST00000539121 WDR62O43379 1518 aa11.94□□□□□ -0.5
USP30-210ENST00000539121 FOXD1Q16676 465 aa11.92□□□□□ -0.5
USP30-210ENST00000539121 CEP164Q9UPV0 1460 aa11.89□□□□□ -0.51
USP30-210ENST00000539121 CFTRP13569 1480 aa11.89□□□□□ -0.51
USP30-210ENST00000539121 PLPPR3Q6T4P5 718 aa11.88□□□□□ -0.51
USP30-210ENST00000539121 FANCD2Q9BXW9 1451 aa11.87□□□□□ -0.51
USP30-210ENST00000539121 RSF1Q96T23 1441 aaPredicted RBP11.86□□□□□ -0.51
USP30-210ENST00000539121 TOP2AP11388 1531 aaKnown RBP11.82□□□□□ -0.52
USP30-210ENST00000539121 OSCARQ8IYS5 282 aa11.8□□□□□ -0.52
USP30-210ENST00000539121 TRIM41Q8WV44 630 aa11.8□□□□□ -0.52
USP30-210ENST00000539121 URB2Q14146 1524 aaKnown RBP11.76□□□□□ -0.53
USP30-210ENST00000539121 PRDM2Q13029 1718 aa11.72□□□□□ -0.53
USP30-210ENST00000539121 CCDC88BA6NC98 1476 aa11.69□□□□□ -0.54
USP30-210ENST00000539121 IFT140Q96RY7 1462 aa11.68□□□□□ -0.54
USP30-210ENST00000539121 ABCC8Q09428 1581 aa11.67□□□□□ -0.54
USP30-210ENST00000539121 TOPBP1Q92547 1522 aa11.63□□□□□ -0.55
USP30-210ENST00000539121 ZNF608Q9ULD9 1512 aaPredicted RBP11.62□□□□□ -0.55
USP30-210ENST00000539121 RIMBP3CA6NJZ7 1639 aa11.59□□□□□ -0.55
USP30-210ENST00000539121 RIMBP3BA6NNM3 1639 aa11.59□□□□□ -0.55
USP30-210ENST00000539121 RIMBP3Q9UFD9 1639 aa11.59□□□□□ -0.55
USP30-210ENST00000539121 DNMBPQ6XZF7 1577 aa11.58□□□□□ -0.55
USP30-210ENST00000539121 ARHGEF11O15085 1522 aa11.55□□□□□ -0.56
USP30-210ENST00000539121 EIF4G3O43432 1585 aaKnown RBP11.55□□□□□ -0.56
USP30-210ENST00000539121 TARBP1Q13395 1621 aaKnown RBP11.53□□□□□ -0.56
USP30-210ENST00000539121 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.56
USP30-210ENST00000539121 POLA1P09884 1462 aaPredicted RBP11.51□□□□□ -0.57
USP30-210ENST00000539121 CYB5RLQ6IPT4 315 aa11.49□□□□□ -0.57
USP30-210ENST00000539121 CHD1O14646 1710 aa11.47□□□□□ -0.57
USP30-210ENST00000539121 WDR97A6NE52 1622 aa11.47□□□□□ -0.57
USP30-210ENST00000539121 SOGA1O94964 1423 aa11.47□□□□□ -0.57
USP30-210ENST00000539121 FBLN2P98095 1184 aa11.46□□□□□ -0.57
USP30-210ENST00000539121 RAD54L2Q9Y4B4 1467 aa11.44□□□□□ -0.58
USP30-210ENST00000539121 TDRD9Q8NDG6 1382 aaKnown RBP11.43□□□□□ -0.58
USP30-210ENST00000539121 ARAP1Q96P48 1450 aa11.43□□□□□ -0.58
USP30-210ENST00000539121 FGD5Q6ZNL6 1462 aa11.41□□□□□ -0.58
USP30-210ENST00000539121 MAGI1Q96QZ7 1491 aaPredicted RBP11.41□□□□□ -0.58
USP30-210ENST00000539121 SNAPC4Q5SXM2 1469 aa11.4□□□□□ -0.58
USP30-210ENST00000539121 CHMP7Q8WUX9 453 aaPredicted RBP11.4□□□□□ -0.58
USP30-210ENST00000539121 GRIN2BQ13224 1484 aa11.39□□□□□ -0.59
USP30-210ENST00000539121 CUX1P39880 1505 aa11.39□□□□□ -0.59
USP30-210ENST00000539121 TRHP20396 242 aaPredicted RBP11.38□□□□□ -0.59
USP30-210ENST00000539121 SYNJ1O43426 1573 aa11.37□□□□□ -0.59
USP30-210ENST00000539121 CLASP1Q7Z460 1538 aa11.37□□□□□ -0.59
USP30-210ENST00000539121 ADRA2BP18089 450 aa11.36□□□□□ -0.59
USP30-210ENST00000539121 SYNJ2O15056 1496 aa11.36□□□□□ -0.59
USP30-210ENST00000539121 GAPVD1Q14C86 1478 aa11.33□□□□□ -0.6
USP30-210ENST00000539121 PPP6R1Q9UPN7 881 aa11.32□□□□□ -0.6
USP30-210ENST00000539121 ABCA10Q8WWZ4 1543 aa11.31□□□□□ -0.6
USP30-210ENST00000539121 PIAS4Q8N2W9 510 aaPredicted RBP11.3□□□□□ -0.6
USP30-210ENST00000539121 PBRM1Q86U86 1689 aa11.29□□□□□ -0.6
USP30-210ENST00000539121 ABCA5Q8WWZ7 1642 aa11.27□□□□□ -0.6
USP30-210ENST00000539121 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
USP30-210ENST00000539121 SUPT5HO00267 1087 aaKnown RBP11.23□□□□□ -0.61
USP30-210ENST00000539121 GRIN2AQ12879 1464 aa11.22□□□□□ -0.61
USP30-210ENST00000539121 NUP160Q12769 1436 aa11.21□□□□□ -0.61
USP30-210ENST00000539121 TOP2BQ02880 1626 aa11.2□□□□□ -0.62
USP30-210ENST00000539121 FHAD1B1AJZ9 1412 aa11.19□□□□□ -0.62
USP30-210ENST00000539121 BIVM-ERCC5R4GMW8 1640 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms