RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 NISCHQ9Y2I1 1504 aa28.52■■■□□ 2.16
RTN3-209ENST00000538995 CCDC180Q9P1Z9 1646 aa25.48■■□□□ 1.67
RTN3-209ENST00000538995 ABCC9O60706 1549 aa25.07■■□□□ 1.6
RTN3-209ENST00000538995 RB1CC1Q8TDY2 1594 aa24.08■■□□□ 1.44
RTN3-209ENST00000538995 NACADO15069 1562 aa24.01■■□□□ 1.43
RTN3-209ENST00000538995 MYO15BQ96JP2 1530 aa23.85■■□□□ 1.41
RTN3-209ENST00000538995 DCAF8L2P0C7V8 631 aa23.79■■□□□ 1.4
RTN3-209ENST00000538995 ZCCHC6Q5VYS8 1495 aaKnown RBP23.74■■□□□ 1.39
RTN3-209ENST00000538995 DCAF1Q9Y4B6 1507 aa23.65■■□□□ 1.38
RTN3-209ENST00000538995 UNC13AQ9UPW8 1703 aa23.42■■□□□ 1.34
RTN3-209ENST00000538995 PABPN1Q86U42 306 aaKnown RBP eCLIP23.35■■□□□ 1.33
RTN3-209ENST00000538995 BICRAQ9NZM4 1560 aa23.32■■□□□ 1.32
RTN3-209ENST00000538995 SHROOM4Q9ULL8 1493 aa23.19■■□□□ 1.3
RTN3-209ENST00000538995 DNAJC5BQ9UF47 199 aa23.17■■□□□ 1.3
RTN3-209ENST00000538995 SCRIBQ14160 1630 aa23.16■■□□□ 1.3
RTN3-209ENST00000538995 EIF4G1Q04637 1599 aaKnown RBP22.75■■□□□ 1.23
RTN3-209ENST00000538995 CC2D2AQ9P2K1 1620 aa22.68■■□□□ 1.22
RTN3-209ENST00000538995 CECR2Q9BXF3 1484 aa22.59■■□□□ 1.21
RTN3-209ENST00000538995 SMARCA4P51532 1647 aa22.17■■□□□ 1.14
RTN3-209ENST00000538995 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
RTN3-209ENST00000538995 BAZ1AQ9NRL2 1556 aaPredicted RBP22.13■■□□□ 1.13
RTN3-209ENST00000538995 ATAD2BQ9ULI0 1458 aa22.12■■□□□ 1.13
RTN3-209ENST00000538995 SMARCA2P51531 1590 aa22.1■■□□□ 1.13
RTN3-209ENST00000538995 HMGXB3Q12766 1538 aa22.05■■□□□ 1.12
RTN3-209ENST00000538995 PEG3Q9GZU2 1588 aa22■■□□□ 1.11
RTN3-209ENST00000538995 MROH2BQ7Z745 1585 aa21.95■■□□□ 1.1
RTN3-209ENST00000538995 BAZ1BQ9UIG0 1483 aaKnown RBP21.92■■□□□ 1.1
RTN3-209ENST00000538995 ERCC6Q03468 1493 aa21.66■■□□□ 1.06
RTN3-209ENST00000538995 WIZO95785 1651 aa21.66■■□□□ 1.06
RTN3-209ENST00000538995 RSF1Q96T23 1441 aaPredicted RBP21.63■■□□□ 1.05
RTN3-209ENST00000538995 NESP48681 1621 aa21.62■■□□□ 1.05
RTN3-209ENST00000538995 LAMC3Q9Y6N6 1575 aa21.6■■□□□ 1.05
RTN3-209ENST00000538995 CUX2O14529 1486 aa21.57■■□□□ 1.04
RTN3-209ENST00000538995 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
RTN3-209ENST00000538995 CADPSQ9ULU8 1353 aa21.48■■□□□ 1.03
RTN3-209ENST00000538995 PDS5BQ9NTI5 1447 aa21.47■■□□□ 1.03
RTN3-209ENST00000538995 THOC2Q8NI27 1593 aaKnown RBP21.39■■□□□ 1.01
RTN3-209ENST00000538995 AEBP2Q6ZN18 517 aaPredicted RBP21.35■■□□□ 1.01
RTN3-209ENST00000538995 KIF21AQ7Z4S6 1674 aa21.34■■□□□ 1.01
RTN3-209ENST00000538995 CFTRP13569 1480 aa21.32■■□□□ 1
RTN3-209ENST00000538995 MRC2Q9UBG0 1479 aa21.26■□□□□ 0.99
RTN3-209ENST00000538995 CEP164Q9UPV0 1460 aa21.24■□□□□ 0.99
RTN3-209ENST00000538995 FANCD2Q9BXW9 1451 aa21.23■□□□□ 0.99
RTN3-209ENST00000538995 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
RTN3-209ENST00000538995 WDR62O43379 1518 aa21.2■□□□□ 0.98
RTN3-209ENST00000538995 DNAJC5Q9H3Z4 198 aa21.18■□□□□ 0.98
RTN3-209ENST00000538995 PRDM2Q13029 1718 aa21.09■□□□□ 0.97
RTN3-209ENST00000538995 URB2Q14146 1524 aaKnown RBP21.02■□□□□ 0.96
RTN3-209ENST00000538995 ABCC8Q09428 1581 aa20.89■□□□□ 0.93
RTN3-209ENST00000538995 TOPBP1Q92547 1522 aa20.86■□□□□ 0.93
RTN3-209ENST00000538995 DNMBPQ6XZF7 1577 aa20.83■□□□□ 0.92
RTN3-209ENST00000538995 SUPT5HO00267 1087 aaKnown RBP20.82■□□□□ 0.92
RTN3-209ENST00000538995 IFT140Q96RY7 1462 aa20.81■□□□□ 0.92
RTN3-209ENST00000538995 ZNF608Q9ULD9 1512 aaPredicted RBP20.68■□□□□ 0.9
RTN3-209ENST00000538995 POLA1P09884 1462 aaPredicted RBP20.68■□□□□ 0.9
RTN3-209ENST00000538995 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.9
RTN3-209ENST00000538995 EIF4G3O43432 1585 aaKnown RBP20.61■□□□□ 0.89
RTN3-209ENST00000538995 CUX1P39880 1505 aa20.61■□□□□ 0.89
RTN3-209ENST00000538995 FGD5Q6ZNL6 1462 aa20.58■□□□□ 0.89
RTN3-209ENST00000538995 SOGA1O94964 1423 aa20.57■□□□□ 0.88
RTN3-209ENST00000538995 OSCARQ8IYS5 282 aa20.57■□□□□ 0.88
RTN3-209ENST00000538995 WDR97A6NE52 1622 aa20.54■□□□□ 0.88
RTN3-209ENST00000538995 RAD54L2Q9Y4B4 1467 aa20.54■□□□□ 0.88
RTN3-209ENST00000538995 AQRO60306 1485 aaKnown RBP eCLIP20.53■□□□□ 0.88
RTN3-209ENST00000538995 TDRD9Q8NDG6 1382 aaKnown RBP20.46■□□□□ 0.87
RTN3-209ENST00000538995 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
RTN3-209ENST00000538995 ABCA10Q8WWZ4 1543 aa20.41■□□□□ 0.86
RTN3-209ENST00000538995 TOP2BQ02880 1626 aa20.39■□□□□ 0.86
RTN3-209ENST00000538995 BIVM-ERCC5R4GMW8 1640 aa20.38■□□□□ 0.85
RTN3-209ENST00000538995 GRIN2BQ13224 1484 aa20.38■□□□□ 0.85
RTN3-209ENST00000538995 MAGI1Q96QZ7 1491 aaPredicted RBP20.37■□□□□ 0.85
RTN3-209ENST00000538995 SNAPC4Q5SXM2 1469 aa20.37■□□□□ 0.85
RTN3-209ENST00000538995 SYNJ1O43426 1573 aa20.34■□□□□ 0.85
RTN3-209ENST00000538995 CHD1O14646 1710 aa20.34■□□□□ 0.85
RTN3-209ENST00000538995 GAPVD1Q14C86 1478 aa20.34■□□□□ 0.85
RTN3-209ENST00000538995 ABCA5Q8WWZ7 1642 aa20.32■□□□□ 0.84
RTN3-209ENST00000538995 FBLN2P98095 1184 aa20.29■□□□□ 0.84
RTN3-209ENST00000538995 SYNJ2O15056 1496 aa20.29■□□□□ 0.84
RTN3-209ENST00000538995 PBRM1Q86U86 1689 aa20.27■□□□□ 0.84
RTN3-209ENST00000538995 CHMP7Q8WUX9 453 aaPredicted RBP20.25■□□□□ 0.83
RTN3-209ENST00000538995 ARHGEF11O15085 1522 aa20.25■□□□□ 0.83
RTN3-209ENST00000538995 RIMBP3CA6NJZ7 1639 aa20.24■□□□□ 0.83
RTN3-209ENST00000538995 RIMBP3BA6NNM3 1639 aa20.24■□□□□ 0.83
RTN3-209ENST00000538995 RIMBP3Q9UFD9 1639 aa20.24■□□□□ 0.83
RTN3-209ENST00000538995 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
RTN3-209ENST00000538995 CLASP1Q7Z460 1538 aa20.2■□□□□ 0.82
RTN3-209ENST00000538995 ERICH3Q5RHP9 1530 aa20.16■□□□□ 0.82
RTN3-209ENST00000538995 ADAMTS12P58397 1594 aa20.15■□□□□ 0.82
RTN3-209ENST00000538995 FHAD1B1AJZ9 1412 aa20.12■□□□□ 0.81
RTN3-209ENST00000538995 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
RTN3-209ENST00000538995 ARAP1Q96P48 1450 aa20.07■□□□□ 0.8
RTN3-209ENST00000538995 NUP160Q12769 1436 aa20.06■□□□□ 0.8
RTN3-209ENST00000538995 CYB5RLQ6IPT4 315 aa20.02■□□□□ 0.8
RTN3-209ENST00000538995 KIF27Q86VH2 1401 aa20.02■□□□□ 0.79
RTN3-209ENST00000538995 CEP170Q5SW79 1584 aa20■□□□□ 0.79
RTN3-209ENST00000538995 IGF1RP08069 1367 aa19.94■□□□□ 0.78
RTN3-209ENST00000538995 CUL7Q14999 1698 aa19.92■□□□□ 0.78
RTN3-209ENST00000538995 SHROOM2Q13796 1616 aa19.91■□□□□ 0.78
RTN3-209ENST00000538995 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
RTN3-209ENST00000538995 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms