RNA–Protein interactions for RNA: ENST00000538725.1

MSRB3-208, Transcript of methionine sulfoxide reductase B3, humanhuman

TSL 4

Gene MSRB3, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSRB3-208ENST00000538725 NISCHQ9Y2I1 1504 aa50.25■■■■■ 5.63
MSRB3-208ENST00000538725 CCDC180Q9P1Z9 1646 aa44.93■■■■■ 4.78
MSRB3-208ENST00000538725 ABCC9O60706 1549 aa44.67■■■■■ 4.74
MSRB3-208ENST00000538725 RB1CC1Q8TDY2 1594 aa42.66■■■■■ 4.42
MSRB3-208ENST00000538725 NACADO15069 1562 aa42.45■■■■■ 4.39
MSRB3-208ENST00000538725 DCAF8L2P0C7V8 631 aa42.38■■■■■ 4.37
MSRB3-208ENST00000538725 MYO15BQ96JP2 1530 aa41.96■■■■■ 4.31
MSRB3-208ENST00000538725 DNAJC5BQ9UF47 199 aa41.71■■■■■ 4.27
MSRB3-208ENST00000538725 PABPN1Q86U42 306 aaKnown RBP eCLIP41.69■■■■■ 4.26
MSRB3-208ENST00000538725 ZCCHC6Q5VYS8 1495 aaKnown RBP41.67■■■■■ 4.26
MSRB3-208ENST00000538725 UNC13AQ9UPW8 1703 aa41.66■■■■■ 4.26
MSRB3-208ENST00000538725 DCAF1Q9Y4B6 1507 aa41.53■■■■■ 4.24
MSRB3-208ENST00000538725 BICRAQ9NZM4 1560 aa41.38■■■■■ 4.22
MSRB3-208ENST00000538725 SCRIBQ14160 1630 aa40.94■■■■■ 4.14
MSRB3-208ENST00000538725 SHROOM4Q9ULL8 1493 aa40.87■■■■■ 4.13
MSRB3-208ENST00000538725 CC2D2AQ9P2K1 1620 aa40.37■■■■■ 4.05
MSRB3-208ENST00000538725 EIF4G1Q04637 1599 aaKnown RBP40.35■■■■■ 4.05
MSRB3-208ENST00000538725 CECR2Q9BXF3 1484 aa40.22■■■■■ 4.03
MSRB3-208ENST00000538725 AEBP2Q6ZN18 517 aaPredicted RBP39.47■■■■□ 3.91
MSRB3-208ENST00000538725 NCAPD3P42695 1498 aa39.21■■■■□ 3.87
MSRB3-208ENST00000538725 SMARCA4P51532 1647 aa39.11■■■■□ 3.85
MSRB3-208ENST00000538725 ATAD2BQ9ULI0 1458 aa39.11■■■■□ 3.85
MSRB3-208ENST00000538725 SMARCA2P51531 1590 aa39.01■■■■□ 3.84
MSRB3-208ENST00000538725 BAZ1AQ9NRL2 1556 aaPredicted RBP38.98■■■■□ 3.83
MSRB3-208ENST00000538725 HMGXB3Q12766 1538 aa38.89■■■■□ 3.82
MSRB3-208ENST00000538725 PEG3Q9GZU2 1588 aa38.74■■■■□ 3.79
MSRB3-208ENST00000538725 BAZ1BQ9UIG0 1483 aaKnown RBP38.73■■■■□ 3.79
MSRB3-208ENST00000538725 MROH2BQ7Z745 1585 aa38.71■■■■□ 3.79
MSRB3-208ENST00000538725 ERCC6Q03468 1493 aa38.56■■■■□ 3.76
MSRB3-208ENST00000538725 NESP48681 1621 aa38.45■■■■□ 3.75
MSRB3-208ENST00000538725 CUX2O14529 1486 aa38.4■■■■□ 3.74
MSRB3-208ENST00000538725 CHIC1Q5VXU3 224 aa38.31■■■■□ 3.72
MSRB3-208ENST00000538725 WIZO95785 1651 aa38.26■■■■□ 3.71
MSRB3-208ENST00000538725 LAMC3Q9Y6N6 1575 aa38.25■■■■□ 3.71
MSRB3-208ENST00000538725 DNAJC5Q9H3Z4 198 aa38.12■■■■□ 3.69
MSRB3-208ENST00000538725 PDS5BQ9NTI5 1447 aa38.05■■■■□ 3.68
MSRB3-208ENST00000538725 CADPSQ9ULU8 1353 aa38.04■■■■□ 3.68
MSRB3-208ENST00000538725 RSF1Q96T23 1441 aaPredicted RBP38.04■■■■□ 3.68
MSRB3-208ENST00000538725 THOC2Q8NI27 1593 aaKnown RBP37.97■■■■□ 3.67
MSRB3-208ENST00000538725 KIF21AQ7Z4S6 1674 aa37.95■■■■□ 3.67
MSRB3-208ENST00000538725 TOP2AP11388 1531 aaKnown RBP37.78■■■■□ 3.64
MSRB3-208ENST00000538725 MRC2Q9UBG0 1479 aa37.65■■■■□ 3.62
MSRB3-208ENST00000538725 CFTRP13569 1480 aa37.64■■■■□ 3.62
MSRB3-208ENST00000538725 CEP164Q9UPV0 1460 aa37.58■■■■□ 3.61
MSRB3-208ENST00000538725 FANCD2Q9BXW9 1451 aa37.57■■■■□ 3.6
MSRB3-208ENST00000538725 WDR62O43379 1518 aa37.54■■■■□ 3.6
MSRB3-208ENST00000538725 CCDC88BA6NC98 1476 aa37.39■■■■□ 3.58
MSRB3-208ENST00000538725 PRDM2Q13029 1718 aa37.24■■■■□ 3.55
MSRB3-208ENST00000538725 URB2Q14146 1524 aaKnown RBP37.22■■■■□ 3.55
MSRB3-208ENST00000538725 TOPBP1Q92547 1522 aa36.89■■■■□ 3.5
MSRB3-208ENST00000538725 ABCC8Q09428 1581 aa36.88■■■■□ 3.49
MSRB3-208ENST00000538725 IFT140Q96RY7 1462 aa36.82■■■■□ 3.49
MSRB3-208ENST00000538725 OSCARQ8IYS5 282 aa36.78■■■■□ 3.48
MSRB3-208ENST00000538725 DNMBPQ6XZF7 1577 aa36.76■■■■□ 3.48
MSRB3-208ENST00000538725 ZNF608Q9ULD9 1512 aaPredicted RBP36.72■■■■□ 3.47
MSRB3-208ENST00000538725 SUPT5HO00267 1087 aaKnown RBP36.62■■■■□ 3.45
MSRB3-208ENST00000538725 TRIM41Q8WV44 630 aa36.54■■■■□ 3.44
MSRB3-208ENST00000538725 TARBP1Q13395 1621 aaKnown RBP36.52■■■■□ 3.44
MSRB3-208ENST00000538725 POLA1P09884 1462 aaPredicted RBP36.52■■■■□ 3.44
MSRB3-208ENST00000538725 EIF4G3O43432 1585 aaKnown RBP36.5■■■■□ 3.43
MSRB3-208ENST00000538725 AQRO60306 1485 aaKnown RBP eCLIP36.46■■■■□ 3.43
MSRB3-208ENST00000538725 SOGA1O94964 1423 aa36.42■■■■□ 3.42
MSRB3-208ENST00000538725 RAD54L2Q9Y4B4 1467 aa36.39■■■■□ 3.42
MSRB3-208ENST00000538725 CUX1P39880 1505 aa36.34■■■■□ 3.41
MSRB3-208ENST00000538725 FGD5Q6ZNL6 1462 aa36.33■■■■□ 3.41
MSRB3-208ENST00000538725 TDRD9Q8NDG6 1382 aaKnown RBP36.29■■■■□ 3.4
MSRB3-208ENST00000538725 FBLN2P98095 1184 aa36.2■■■■□ 3.39
MSRB3-208ENST00000538725 CHD1O14646 1710 aa36.19■■■■□ 3.38
MSRB3-208ENST00000538725 WDR97A6NE52 1622 aa36.19■■■■□ 3.38
MSRB3-208ENST00000538725 RIMBP3CA6NJZ7 1639 aa36.16■■■■□ 3.38
MSRB3-208ENST00000538725 RIMBP3BA6NNM3 1639 aa36.16■■■■□ 3.38
MSRB3-208ENST00000538725 RIMBP3Q9UFD9 1639 aa36.16■■■■□ 3.38
MSRB3-208ENST00000538725 ARHGEF11O15085 1522 aa36.08■■■■□ 3.37
MSRB3-208ENST00000538725 SNAPC4Q5SXM2 1469 aa36.05■■■■□ 3.36
MSRB3-208ENST00000538725 GRIN2BQ13224 1484 aa36.04■■■■□ 3.36
MSRB3-208ENST00000538725 CHMP7Q8WUX9 453 aaPredicted RBP36■■■■□ 3.35
MSRB3-208ENST00000538725 MAGI1Q96QZ7 1491 aaPredicted RBP35.99■■■■□ 3.35
MSRB3-208ENST00000538725 ABCA10Q8WWZ4 1543 aa35.95■■■■□ 3.35
MSRB3-208ENST00000538725 GAPVD1Q14C86 1478 aa35.95■■■■□ 3.35
MSRB3-208ENST00000538725 CYB5RLQ6IPT4 315 aa35.89■■■■□ 3.34
MSRB3-208ENST00000538725 WRNQ14191 1432 aaPredicted RBP eCLIP35.89■■■■□ 3.34
MSRB3-208ENST00000538725 SYNJ2O15056 1496 aa35.87■■■■□ 3.33
MSRB3-208ENST00000538725 PBRM1Q86U86 1689 aa35.87■■■■□ 3.33
MSRB3-208ENST00000538725 TOP2BQ02880 1626 aa35.84■■■■□ 3.33
MSRB3-208ENST00000538725 ABCA5Q8WWZ7 1642 aa35.83■■■■□ 3.33
MSRB3-208ENST00000538725 BIVM-ERCC5R4GMW8 1640 aa35.83■■■■□ 3.33
MSRB3-208ENST00000538725 SYNJ1O43426 1573 aa35.81■■■■□ 3.32
MSRB3-208ENST00000538725 CLASP1Q7Z460 1538 aa35.78■■■■□ 3.32
MSRB3-208ENST00000538725 ARAP1Q96P48 1450 aa35.73■■■■□ 3.31
MSRB3-208ENST00000538725 GRIN2AQ12879 1464 aa35.55■■■■□ 3.28
MSRB3-208ENST00000538725 ADAMTS12P58397 1594 aa35.53■■■■□ 3.28
MSRB3-208ENST00000538725 FHAD1B1AJZ9 1412 aa35.51■■■■□ 3.28
MSRB3-208ENST00000538725 ERICH3Q5RHP9 1530 aa35.51■■■■□ 3.27
MSRB3-208ENST00000538725 NUP160Q12769 1436 aa35.43■■■■□ 3.26
MSRB3-208ENST00000538725 CEP170Q5SW79 1584 aa35.39■■■■□ 3.26
MSRB3-208ENST00000538725 TRHP20396 242 aaPredicted RBP35.39■■■■□ 3.26
MSRB3-208ENST00000538725 ERCC6L2Q5T890 1561 aa35.25■■■■□ 3.23
MSRB3-208ENST00000538725 SHROOM2Q13796 1616 aa35.22■■■■□ 3.23
MSRB3-208ENST00000538725 KIF27Q86VH2 1401 aa35.2■■■■□ 3.23
MSRB3-208ENST00000538725 IGF1RP08069 1367 aa35.17■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms