RNA–Protein interactions for RNA: ENST00000538036.1

VPS37C-204, Transcript of VPS37C, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS37C, Length 506 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS37C-204ENST00000538036 NISCHQ9Y2I1 1504 aa25.88■■□□□ 1.73
VPS37C-204ENST00000538036 ABCC9O60706 1549 aa23.51■■□□□ 1.35
VPS37C-204ENST00000538036 CCDC180Q9P1Z9 1646 aa23.28■■□□□ 1.32
VPS37C-204ENST00000538036 RB1CC1Q8TDY2 1594 aa22.31■■□□□ 1.16
VPS37C-204ENST00000538036 DNAJC5BQ9UF47 199 aa22.29■■□□□ 1.16
VPS37C-204ENST00000538036 NACADO15069 1562 aa22.13■■□□□ 1.13
VPS37C-204ENST00000538036 DCAF8L2P0C7V8 631 aa21.96■■□□□ 1.11
VPS37C-204ENST00000538036 PABPN1Q86U42 306 aaKnown RBP eCLIP21.88■■□□□ 1.09
VPS37C-204ENST00000538036 MYO15BQ96JP2 1530 aa21.8■■□□□ 1.08
VPS37C-204ENST00000538036 UNC13AQ9UPW8 1703 aa21.66■■□□□ 1.06
VPS37C-204ENST00000538036 BICRAQ9NZM4 1560 aa21.61■■□□□ 1.05
VPS37C-204ENST00000538036 SHROOM4Q9ULL8 1493 aa21.43■■□□□ 1.02
VPS37C-204ENST00000538036 DCAF1Q9Y4B6 1507 aa21.4■■□□□ 1.02
VPS37C-204ENST00000538036 ZCCHC6Q5VYS8 1495 aaKnown RBP21.38■■□□□ 1.01
VPS37C-204ENST00000538036 CECR2Q9BXF3 1484 aa21.24■□□□□ 0.99
VPS37C-204ENST00000538036 CC2D2AQ9P2K1 1620 aa21.22■□□□□ 0.99
VPS37C-204ENST00000538036 SCRIBQ14160 1630 aa21.15■□□□□ 0.98
VPS37C-204ENST00000538036 EIF4G1Q04637 1599 aaKnown RBP21.13■□□□□ 0.97
VPS37C-204ENST00000538036 DNAJC5Q9H3Z4 198 aa20.72■□□□□ 0.91
VPS37C-204ENST00000538036 NCAPD3P42695 1498 aa20.46■□□□□ 0.87
VPS37C-204ENST00000538036 CUX2O14529 1486 aa20.43■□□□□ 0.86
VPS37C-204ENST00000538036 ERCC6Q03468 1493 aa20.35■□□□□ 0.85
VPS37C-204ENST00000538036 ATAD2BQ9ULI0 1458 aa20.32■□□□□ 0.84
VPS37C-204ENST00000538036 SMARCA2P51531 1590 aa20.26■□□□□ 0.83
VPS37C-204ENST00000538036 HMGXB3Q12766 1538 aa20.24■□□□□ 0.83
VPS37C-204ENST00000538036 SMARCA4P51532 1647 aa20.19■□□□□ 0.82
VPS37C-204ENST00000538036 BAZ1AQ9NRL2 1556 aaPredicted RBP20.11■□□□□ 0.81
VPS37C-204ENST00000538036 BAZ1BQ9UIG0 1483 aaKnown RBP20.11■□□□□ 0.81
VPS37C-204ENST00000538036 NESP48681 1621 aa20.1■□□□□ 0.81
VPS37C-204ENST00000538036 PEG3Q9GZU2 1588 aa20.04■□□□□ 0.8
VPS37C-204ENST00000538036 LAMC3Q9Y6N6 1575 aa19.99■□□□□ 0.79
VPS37C-204ENST00000538036 THOC2Q8NI27 1593 aaKnown RBP19.94■□□□□ 0.78
VPS37C-204ENST00000538036 PDS5BQ9NTI5 1447 aa19.93■□□□□ 0.78
VPS37C-204ENST00000538036 MROH2BQ7Z745 1585 aa19.9■□□□□ 0.78
VPS37C-204ENST00000538036 CADPSQ9ULU8 1353 aa19.83■□□□□ 0.76
VPS37C-204ENST00000538036 KIF21AQ7Z4S6 1674 aa19.78■□□□□ 0.76
VPS37C-204ENST00000538036 MRC2Q9UBG0 1479 aa19.73■□□□□ 0.75
VPS37C-204ENST00000538036 WDR62O43379 1518 aa19.66■□□□□ 0.74
VPS37C-204ENST00000538036 TRIM41Q8WV44 630 aa19.63■□□□□ 0.73
VPS37C-204ENST00000538036 CEP164Q9UPV0 1460 aa19.6■□□□□ 0.73
VPS37C-204ENST00000538036 WIZO95785 1651 aa19.59■□□□□ 0.73
VPS37C-204ENST00000538036 FANCD2Q9BXW9 1451 aa19.55■□□□□ 0.72
VPS37C-204ENST00000538036 CFTRP13569 1480 aa19.54■□□□□ 0.72
VPS37C-204ENST00000538036 OSCARQ8IYS5 282 aa19.51■□□□□ 0.71
VPS37C-204ENST00000538036 RSF1Q96T23 1441 aaPredicted RBP19.44■□□□□ 0.7
VPS37C-204ENST00000538036 TOP2AP11388 1531 aaKnown RBP19.4■□□□□ 0.7
VPS37C-204ENST00000538036 URB2Q14146 1524 aaKnown RBP19.38■□□□□ 0.69
VPS37C-204ENST00000538036 IFT140Q96RY7 1462 aa19.24■□□□□ 0.67
VPS37C-204ENST00000538036 CCDC88BA6NC98 1476 aa19.2■□□□□ 0.66
VPS37C-204ENST00000538036 PRDM2Q13029 1718 aa19.18■□□□□ 0.66
VPS37C-204ENST00000538036 ABCC8Q09428 1581 aa19.18■□□□□ 0.66
VPS37C-204ENST00000538036 ZNF608Q9ULD9 1512 aaPredicted RBP19.17■□□□□ 0.66
VPS37C-204ENST00000538036 TOPBP1Q92547 1522 aa19.15■□□□□ 0.66
VPS37C-204ENST00000538036 RIMBP3CA6NJZ7 1639 aa19.14■□□□□ 0.65
VPS37C-204ENST00000538036 RIMBP3BA6NNM3 1639 aa19.14■□□□□ 0.65
VPS37C-204ENST00000538036 RIMBP3Q9UFD9 1639 aa19.14■□□□□ 0.65
VPS37C-204ENST00000538036 ARHGEF11O15085 1522 aa19.1■□□□□ 0.65
VPS37C-204ENST00000538036 DNMBPQ6XZF7 1577 aa19.05■□□□□ 0.64
VPS37C-204ENST00000538036 EIF4G3O43432 1585 aaKnown RBP19.02■□□□□ 0.64
VPS37C-204ENST00000538036 CYB5RLQ6IPT4 315 aa19.02■□□□□ 0.64
VPS37C-204ENST00000538036 AQRO60306 1485 aaKnown RBP eCLIP19■□□□□ 0.636e-8■■■■■ 32.6
VPS37C-204ENST00000538036 TARBP1Q13395 1621 aaKnown RBP18.96■□□□□ 0.63
VPS37C-204ENST00000538036 FBLN2P98095 1184 aa18.95■□□□□ 0.62
VPS37C-204ENST00000538036 POLA1P09884 1462 aaPredicted RBP18.93■□□□□ 0.62
VPS37C-204ENST00000538036 SOGA1O94964 1423 aa18.9■□□□□ 0.62
VPS37C-204ENST00000538036 TRHP20396 242 aaPredicted RBP18.88■□□□□ 0.61
VPS37C-204ENST00000538036 ARAP1Q96P48 1450 aa18.88■□□□□ 0.61
VPS37C-204ENST00000538036 CHD1O14646 1710 aa18.88■□□□□ 0.61
VPS37C-204ENST00000538036 TDRD9Q8NDG6 1382 aaKnown RBP18.86■□□□□ 0.61
VPS37C-204ENST00000538036 RAD54L2Q9Y4B4 1467 aa18.85■□□□□ 0.61
VPS37C-204ENST00000538036 WDR97A6NE52 1622 aa18.82■□□□□ 0.6
VPS37C-204ENST00000538036 CHMP7Q8WUX9 453 aaPredicted RBP18.81■□□□□ 0.6
VPS37C-204ENST00000538036 SNAPC4Q5SXM2 1469 aa18.77■□□□□ 0.6
VPS37C-204ENST00000538036 FGD5Q6ZNL6 1462 aa18.77■□□□□ 0.6
VPS37C-204ENST00000538036 MAGI1Q96QZ7 1491 aaPredicted RBP18.77■□□□□ 0.6
VPS37C-204ENST00000538036 GRIN2BQ13224 1484 aa18.75■□□□□ 0.59
VPS37C-204ENST00000538036 CLASP1Q7Z460 1538 aa18.74■□□□□ 0.59
VPS37C-204ENST00000538036 SYNJ1O43426 1573 aa18.73■□□□□ 0.59
VPS37C-204ENST00000538036 SYNJ2O15056 1496 aa18.71■□□□□ 0.59
VPS37C-204ENST00000538036 CUX1P39880 1505 aa18.7■□□□□ 0.58
VPS37C-204ENST00000538036 GAPVD1Q14C86 1478 aa18.64■□□□□ 0.57
VPS37C-204ENST00000538036 ABCA10Q8WWZ4 1543 aa18.59■□□□□ 0.57
VPS37C-204ENST00000538036 AEBP2Q6ZN18 517 aaPredicted RBP18.53■□□□□ 0.56
VPS37C-204ENST00000538036 PBRM1Q86U86 1689 aa18.53■□□□□ 0.56
VPS37C-204ENST00000538036 ABCA5Q8WWZ7 1642 aa18.52■□□□□ 0.55
VPS37C-204ENST00000538036 WRNQ14191 1432 aaPredicted RBP eCLIP18.5■□□□□ 0.55
VPS37C-204ENST00000538036 GRIN2AQ12879 1464 aa18.48■□□□□ 0.55
VPS37C-204ENST00000538036 NUP160Q12769 1436 aa18.44■□□□□ 0.54
VPS37C-204ENST00000538036 FHAD1B1AJZ9 1412 aa18.41■□□□□ 0.54
VPS37C-204ENST00000538036 SUPT5HO00267 1087 aaKnown RBP18.4■□□□□ 0.54
VPS37C-204ENST00000538036 ADAMTS12P58397 1594 aa18.39■□□□□ 0.53
VPS37C-204ENST00000538036 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
VPS37C-204ENST00000538036 ERCC6L2Q5T890 1561 aa18.38■□□□□ 0.53
VPS37C-204ENST00000538036 TOP2BQ02880 1626 aa18.35■□□□□ 0.53
VPS37C-204ENST00000538036 SHROOM2Q13796 1616 aa18.34■□□□□ 0.53
VPS37C-204ENST00000538036 ERICH3Q5RHP9 1530 aa18.34■□□□□ 0.53
VPS37C-204ENST00000538036 BIVM-ERCC5R4GMW8 1640 aa18.33■□□□□ 0.52
VPS37C-204ENST00000538036 JPH4Q96JJ6 628 aa18.3■□□□□ 0.52
VPS37C-204ENST00000538036 PRG4Q92954 1404 aaPredicted RBP18.29■□□□□ 0.52
VPS37C-204ENST00000538036 NPM1P06748 294 aaKnown RBP eCLIP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms