RNA–Protein interactions for RNA: ENST00000536400.5

PRKCH-202, Transcript of protein kinase C eta, humanhuman

TSL 2

Gene PRKCH, Length 968 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-202ENST00000536400 NISCHQ9Y2I1 1504 aa19.24■□□□□ 0.67
PRKCH-202ENST00000536400 ABCC9O60706 1549 aa17.72■□□□□ 0.43
PRKCH-202ENST00000536400 CCDC180Q9P1Z9 1646 aa17.41■□□□□ 0.38
PRKCH-202ENST00000536400 AEBP2Q6ZN18 517 aaPredicted RBP17.25■□□□□ 0.35
PRKCH-202ENST00000536400 DNAJC5BQ9UF47 199 aa16.97■□□□□ 0.31
PRKCH-202ENST00000536400 RB1CC1Q8TDY2 1594 aa16.73■□□□□ 0.27
PRKCH-202ENST00000536400 CHIC1Q5VXU3 224 aa16.6■□□□□ 0.25
PRKCH-202ENST00000536400 NACADO15069 1562 aa16.55■□□□□ 0.24
PRKCH-202ENST00000536400 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
PRKCH-202ENST00000536400 UNC13AQ9UPW8 1703 aa16.39■□□□□ 0.21
PRKCH-202ENST00000536400 DCAF8L2P0C7V8 631 aa16.32■□□□□ 0.2
PRKCH-202ENST00000536400 BICRAQ9NZM4 1560 aa16.28■□□□□ 0.2
PRKCH-202ENST00000536400 MYO15BQ96JP2 1530 aa16.23■□□□□ 0.19
PRKCH-202ENST00000536400 SHROOM4Q9ULL8 1493 aa16.03■□□□□ 0.16
PRKCH-202ENST00000536400 CECR2Q9BXF3 1484 aa16.02■□□□□ 0.15
PRKCH-202ENST00000536400 CC2D2AQ9P2K1 1620 aa16.01■□□□□ 0.15
PRKCH-202ENST00000536400 EIF4G1Q04637 1599 aaKnown RBP15.9■□□□□ 0.14
PRKCH-202ENST00000536400 DCAF1Q9Y4B6 1507 aa15.89■□□□□ 0.13
PRKCH-202ENST00000536400 ZCCHC6Q5VYS8 1495 aaKnown RBP15.87■□□□□ 0.13
PRKCH-202ENST00000536400 DNAJC5Q9H3Z4 198 aa15.83■□□□□ 0.12
PRKCH-202ENST00000536400 SCRIBQ14160 1630 aa15.81■□□□□ 0.12
PRKCH-202ENST00000536400 CUX2O14529 1486 aa15.45■□□□□ 0.06
PRKCH-202ENST00000536400 ERCC6Q03468 1493 aa15.32■□□□□ 0.04
PRKCH-202ENST00000536400 NCAPD3P42695 1498 aa15.29■□□□□ 0.04
PRKCH-202ENST00000536400 ATAD2BQ9ULI0 1458 aa15.2■□□□□ 0.02
PRKCH-202ENST00000536400 NESP48681 1621 aa15.14■□□□□ 0.01
PRKCH-202ENST00000536400 HMGXB3Q12766 1538 aa15.13■□□□□ 0.01
PRKCH-202ENST00000536400 SMARCA2P51531 1590 aa15.11■□□□□ 0.01
PRKCH-202ENST00000536400 THOC2Q8NI27 1593 aaKnown RBP15.07■□□□□ 0
PRKCH-202ENST00000536400 SMARCA4P51532 1647 aa15.07■□□□□ 0
PRKCH-202ENST00000536400 BAZ1BQ9UIG0 1483 aaKnown RBP15□□□□□ -0.01
PRKCH-202ENST00000536400 LAMC3Q9Y6N6 1575 aa14.99□□□□□ -0.01
PRKCH-202ENST00000536400 PEG3Q9GZU2 1588 aa14.96□□□□□ -0.01
PRKCH-202ENST00000536400 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
PRKCH-202ENST00000536400 TRIM41Q8WV44 630 aa14.94□□□□□ -0.02
PRKCH-202ENST00000536400 KIF21AQ7Z4S6 1674 aa14.93□□□□□ -0.02
PRKCH-202ENST00000536400 PDS5BQ9NTI5 1447 aa14.91□□□□□ -0.02
PRKCH-202ENST00000536400 MROH2BQ7Z745 1585 aa14.81□□□□□ -0.04
PRKCH-202ENST00000536400 SENP3Q9H4L4 574 aaPredicted RBP14.8□□□□□ -0.04
PRKCH-202ENST00000536400 CADPSQ9ULU8 1353 aa14.8□□□□□ -0.04
PRKCH-202ENST00000536400 WDR62O43379 1518 aa14.79□□□□□ -0.04
PRKCH-202ENST00000536400 MRC2Q9UBG0 1479 aa14.79□□□□□ -0.04
PRKCH-202ENST00000536400 PHF23Q9BUL5 403 aaPredicted RBP14.68□□□□□ -0.06
PRKCH-202ENST00000536400 CEP164Q9UPV0 1460 aa14.66□□□□□ -0.06
PRKCH-202ENST00000536400 OSCARQ8IYS5 282 aa14.66□□□□□ -0.06
PRKCH-202ENST00000536400 FANCD2Q9BXW9 1451 aa14.62□□□□□ -0.07
PRKCH-202ENST00000536400 WIZO95785 1651 aa14.61□□□□□ -0.07
PRKCH-202ENST00000536400 CFTRP13569 1480 aa14.57□□□□□ -0.08
PRKCH-202ENST00000536400 URB2Q14146 1524 aaKnown RBP14.53□□□□□ -0.08
PRKCH-202ENST00000536400 RIMBP3CA6NJZ7 1639 aa14.52□□□□□ -0.09
PRKCH-202ENST00000536400 RIMBP3BA6NNM3 1639 aa14.52□□□□□ -0.09
PRKCH-202ENST00000536400 RIMBP3Q9UFD9 1639 aa14.52□□□□□ -0.09
PRKCH-202ENST00000536400 ARHGEF11O15085 1522 aa14.44□□□□□ -0.1
PRKCH-202ENST00000536400 TOP2AP11388 1531 aaKnown RBP14.41□□□□□ -0.1
PRKCH-202ENST00000536400 ZNF608Q9ULD9 1512 aaPredicted RBP14.41□□□□□ -0.1
PRKCH-202ENST00000536400 IFT140Q96RY7 1462 aa14.39□□□□□ -0.11
PRKCH-202ENST00000536400 PRDM2Q13029 1718 aa14.39□□□□□ -0.11
PRKCH-202ENST00000536400 RSF1Q96T23 1441 aaPredicted RBP14.38□□□□□ -0.11
PRKCH-202ENST00000536400 CYB5RLQ6IPT4 315 aa14.34□□□□□ -0.11
PRKCH-202ENST00000536400 TOPBP1Q92547 1522 aa14.31□□□□□ -0.12
PRKCH-202ENST00000536400 EIF4G3O43432 1585 aaKnown RBP14.3□□□□□ -0.12
PRKCH-202ENST00000536400 ARAP1Q96P48 1450 aa14.28□□□□□ -0.12
PRKCH-202ENST00000536400 CHD1O14646 1710 aa14.26□□□□□ -0.13
PRKCH-202ENST00000536400 ABCC8Q09428 1581 aa14.26□□□□□ -0.13
PRKCH-202ENST00000536400 CCDC88BA6NC98 1476 aa14.25□□□□□ -0.13
PRKCH-202ENST00000536400 TRHP20396 242 aaPredicted RBP14.25□□□□□ -0.13
PRKCH-202ENST00000536400 TARBP1Q13395 1621 aaKnown RBP14.23□□□□□ -0.13
PRKCH-202ENST00000536400 DNMBPQ6XZF7 1577 aa14.22□□□□□ -0.13
PRKCH-202ENST00000536400 AQRO60306 1485 aaKnown RBP eCLIP14.22□□□□□ -0.13
PRKCH-202ENST00000536400 FBLN2P98095 1184 aa14.16□□□□□ -0.14
PRKCH-202ENST00000536400 POLA1P09884 1462 aaPredicted RBP14.14□□□□□ -0.15
PRKCH-202ENST00000536400 CLASP1Q7Z460 1538 aa14.1□□□□□ -0.15
PRKCH-202ENST00000536400 RAD54L2Q9Y4B4 1467 aa14.09□□□□□ -0.15
PRKCH-202ENST00000536400 TDRD9Q8NDG6 1382 aaKnown RBP14.08□□□□□ -0.16
PRKCH-202ENST00000536400 SNAPC4Q5SXM2 1469 aa14.06□□□□□ -0.16
PRKCH-202ENST00000536400 SOGA1O94964 1423 aa14.06□□□□□ -0.16
PRKCH-202ENST00000536400 WDR97A6NE52 1622 aa14.05□□□□□ -0.16
PRKCH-202ENST00000536400 SYNJ1O43426 1573 aa14.04□□□□□ -0.16
PRKCH-202ENST00000536400 MAGI1Q96QZ7 1491 aaPredicted RBP14.02□□□□□ -0.16
PRKCH-202ENST00000536400 CHMP7Q8WUX9 453 aaPredicted RBP14.02□□□□□ -0.17
PRKCH-202ENST00000536400 FGD5Q6ZNL6 1462 aa13.99□□□□□ -0.17
PRKCH-202ENST00000536400 SYNJ2O15056 1496 aa13.98□□□□□ -0.17
PRKCH-202ENST00000536400 GRIN2BQ13224 1484 aa13.98□□□□□ -0.17
PRKCH-202ENST00000536400 GAPVD1Q14C86 1478 aa13.97□□□□□ -0.17
PRKCH-202ENST00000536400 CUX1P39880 1505 aa13.94□□□□□ -0.18
PRKCH-202ENST00000536400 PBRM1Q86U86 1689 aa13.91□□□□□ -0.18
PRKCH-202ENST00000536400 ERCC6L2Q5T890 1561 aa13.85□□□□□ -0.19
PRKCH-202ENST00000536400 ABCA5Q8WWZ7 1642 aa13.84□□□□□ -0.19
PRKCH-202ENST00000536400 ABCA10Q8WWZ4 1543 aa13.84□□□□□ -0.19
PRKCH-202ENST00000536400 GRIN2AQ12879 1464 aa13.8□□□□□ -0.2
PRKCH-202ENST00000536400 CEP170Q5SW79 1584 aa13.79□□□□□ -0.2
PRKCH-202ENST00000536400 NUP160Q12769 1436 aa13.79□□□□□ -0.2
PRKCH-202ENST00000536400 KIF13AQ9H1H9 1805 aa13.78□□□□□ -0.2
PRKCH-202ENST00000536400 SHROOM2Q13796 1616 aa13.77□□□□□ -0.21
PRKCH-202ENST00000536400 FOXD1Q16676 465 aa13.77□□□□□ -0.21
PRKCH-202ENST00000536400 ADAMTS12P58397 1594 aa13.75□□□□□ -0.21
PRKCH-202ENST00000536400 FHAD1B1AJZ9 1412 aa13.7□□□□□ -0.22
PRKCH-202ENST00000536400 WRNQ14191 1432 aaPredicted RBP eCLIP13.69□□□□□ -0.22
PRKCH-202ENST00000536400 PLPPR3Q6T4P5 718 aa13.67□□□□□ -0.22
PRKCH-202ENST00000536400 ABCC10Q5T3U5 1492 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms