RNA–Protein interactions for RNA: ENST00000536172.5

LMO3-213, Transcript of LIM domain only 3, humanhuman

TSL 3

Gene LMO3, Length 587 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-213ENST00000536172 NISCHQ9Y2I1 1504 aa27.97■■■□□ 2.07
LMO3-213ENST00000536172 CCDC180Q9P1Z9 1646 aa25.23■■□□□ 1.63
LMO3-213ENST00000536172 ABCC9O60706 1549 aa25.18■■□□□ 1.62
LMO3-213ENST00000536172 RB1CC1Q8TDY2 1594 aa24.04■■□□□ 1.44
LMO3-213ENST00000536172 NACADO15069 1562 aa23.86■■□□□ 1.41
LMO3-213ENST00000536172 DNAJC5BQ9UF47 199 aa23.66■■□□□ 1.38
LMO3-213ENST00000536172 DCAF8L2P0C7V8 631 aa23.57■■□□□ 1.36
LMO3-213ENST00000536172 MYO15BQ96JP2 1530 aa23.54■■□□□ 1.36
LMO3-213ENST00000536172 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
LMO3-213ENST00000536172 PABPN1Q86U42 306 aaKnown RBP eCLIP23.39■■□□□ 1.33
LMO3-213ENST00000536172 BICRAQ9NZM4 1560 aa23.27■■□□□ 1.32
LMO3-213ENST00000536172 DCAF1Q9Y4B6 1507 aa23.17■■□□□ 1.3
LMO3-213ENST00000536172 ZCCHC6Q5VYS8 1495 aaKnown RBP23.15■■□□□ 1.3
LMO3-213ENST00000536172 SHROOM4Q9ULL8 1493 aa23.09■■□□□ 1.29
LMO3-213ENST00000536172 SCRIBQ14160 1630 aa22.86■■□□□ 1.25
LMO3-213ENST00000536172 CC2D2AQ9P2K1 1620 aa22.8■■□□□ 1.24
LMO3-213ENST00000536172 CECR2Q9BXF3 1484 aa22.74■■□□□ 1.23
LMO3-213ENST00000536172 EIF4G1Q04637 1599 aaKnown RBP22.73■■□□□ 1.23
LMO3-213ENST00000536172 NCAPD3P42695 1498 aa22■■□□□ 1.11
LMO3-213ENST00000536172 DNAJC5Q9H3Z4 198 aa21.92■■□□□ 1.1
LMO3-213ENST00000536172 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
LMO3-213ENST00000536172 SMARCA2P51531 1590 aa21.87■■□□□ 1.09
LMO3-213ENST00000536172 CUX2O14529 1486 aa21.86■■□□□ 1.09
LMO3-213ENST00000536172 SMARCA4P51532 1647 aa21.85■■□□□ 1.09
LMO3-213ENST00000536172 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
LMO3-213ENST00000536172 ERCC6Q03468 1493 aa21.81■■□□□ 1.08
LMO3-213ENST00000536172 BAZ1AQ9NRL2 1556 aaPredicted RBP21.75■■□□□ 1.07
LMO3-213ENST00000536172 BAZ1BQ9UIG0 1483 aaKnown RBP21.68■■□□□ 1.06
LMO3-213ENST00000536172 PEG3Q9GZU2 1588 aa21.68■■□□□ 1.06
LMO3-213ENST00000536172 NESP48681 1621 aa21.58■■□□□ 1.05
LMO3-213ENST00000536172 LAMC3Q9Y6N6 1575 aa21.55■■□□□ 1.04
LMO3-213ENST00000536172 MROH2BQ7Z745 1585 aa21.49■■□□□ 1.03
LMO3-213ENST00000536172 THOC2Q8NI27 1593 aaKnown RBP21.46■■□□□ 1.03
LMO3-213ENST00000536172 PDS5BQ9NTI5 1447 aa21.41■■□□□ 1.02
LMO3-213ENST00000536172 KIF21AQ7Z4S6 1674 aa21.38■■□□□ 1.01
LMO3-213ENST00000536172 CADPSQ9ULU8 1353 aa21.3■■□□□ 1
LMO3-213ENST00000536172 WIZO95785 1651 aa21.25■□□□□ 0.99
LMO3-213ENST00000536172 MRC2Q9UBG0 1479 aa21.2■□□□□ 0.98
LMO3-213ENST00000536172 WDR62O43379 1518 aa21.17■□□□□ 0.98
LMO3-213ENST00000536172 AEBP2Q6ZN18 517 aaPredicted RBP21.16■□□□□ 0.98
LMO3-213ENST00000536172 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
LMO3-213ENST00000536172 CFTRP13569 1480 aa21.05■□□□□ 0.96
LMO3-213ENST00000536172 FANCD2Q9BXW9 1451 aa21.05■□□□□ 0.96
LMO3-213ENST00000536172 RSF1Q96T23 1441 aaPredicted RBP21.03■□□□□ 0.96
LMO3-213ENST00000536172 TOP2AP11388 1531 aaKnown RBP21.01■□□□□ 0.95
LMO3-213ENST00000536172 CHIC1Q5VXU3 224 aa20.93■□□□□ 0.94
LMO3-213ENST00000536172 PRDM2Q13029 1718 aa20.92■□□□□ 0.94
LMO3-213ENST00000536172 URB2Q14146 1524 aaKnown RBP20.86■□□□□ 0.93
LMO3-213ENST00000536172 TRIM41Q8WV44 630 aa20.84■□□□□ 0.93
LMO3-213ENST00000536172 OSCARQ8IYS5 282 aa20.81■□□□□ 0.92
LMO3-213ENST00000536172 CCDC88BA6NC98 1476 aa20.74■□□□□ 0.91
LMO3-213ENST00000536172 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
LMO3-213ENST00000536172 ABCC8Q09428 1581 aa20.68■□□□□ 0.9
LMO3-213ENST00000536172 TOPBP1Q92547 1522 aa20.63■□□□□ 0.89
LMO3-213ENST00000536172 ZNF608Q9ULD9 1512 aaPredicted RBP20.58■□□□□ 0.89
LMO3-213ENST00000536172 DNMBPQ6XZF7 1577 aa20.58■□□□□ 0.88
LMO3-213ENST00000536172 RIMBP3CA6NJZ7 1639 aa20.53■□□□□ 0.88
LMO3-213ENST00000536172 RIMBP3BA6NNM3 1639 aa20.53■□□□□ 0.88
LMO3-213ENST00000536172 RIMBP3Q9UFD9 1639 aa20.53■□□□□ 0.88
LMO3-213ENST00000536172 EIF4G3O43432 1585 aaKnown RBP20.53■□□□□ 0.88
LMO3-213ENST00000536172 TARBP1Q13395 1621 aaKnown RBP20.48■□□□□ 0.87
LMO3-213ENST00000536172 ARHGEF11O15085 1522 aa20.45■□□□□ 0.86
LMO3-213ENST00000536172 CHD1O14646 1710 aa20.41■□□□□ 0.86
LMO3-213ENST00000536172 POLA1P09884 1462 aaPredicted RBP20.41■□□□□ 0.86
LMO3-213ENST00000536172 AQRO60306 1485 aaKnown RBP eCLIP20.4■□□□□ 0.86
LMO3-213ENST00000536172 WDR97A6NE52 1622 aa20.36■□□□□ 0.85
LMO3-213ENST00000536172 SOGA1O94964 1423 aa20.32■□□□□ 0.84
LMO3-213ENST00000536172 FBLN2P98095 1184 aa20.29■□□□□ 0.84
LMO3-213ENST00000536172 RAD54L2Q9Y4B4 1467 aa20.29■□□□□ 0.84
LMO3-213ENST00000536172 CYB5RLQ6IPT4 315 aa20.27■□□□□ 0.84
LMO3-213ENST00000536172 FGD5Q6ZNL6 1462 aa20.26■□□□□ 0.83
LMO3-213ENST00000536172 TDRD9Q8NDG6 1382 aaKnown RBP20.25■□□□□ 0.83
LMO3-213ENST00000536172 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
LMO3-213ENST00000536172 ARAP1Q96P48 1450 aa20.22■□□□□ 0.83
LMO3-213ENST00000536172 CUX1P39880 1505 aa20.22■□□□□ 0.83
LMO3-213ENST00000536172 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
LMO3-213ENST00000536172 GRIN2BQ13224 1484 aa20.18■□□□□ 0.82
LMO3-213ENST00000536172 SYNJ1O43426 1573 aa20.18■□□□□ 0.82
LMO3-213ENST00000536172 CHMP7Q8WUX9 453 aaPredicted RBP20.17■□□□□ 0.82
LMO3-213ENST00000536172 CLASP1Q7Z460 1538 aa20.17■□□□□ 0.82
LMO3-213ENST00000536172 SYNJ2O15056 1496 aa20.14■□□□□ 0.81
LMO3-213ENST00000536172 PBRM1Q86U86 1689 aa20.11■□□□□ 0.81
LMO3-213ENST00000536172 TRHP20396 242 aaPredicted RBP20.09■□□□□ 0.81
LMO3-213ENST00000536172 GAPVD1Q14C86 1478 aa20.09■□□□□ 0.81
LMO3-213ENST00000536172 ABCA10Q8WWZ4 1543 aa20.07■□□□□ 0.8
LMO3-213ENST00000536172 ABCA5Q8WWZ7 1642 aa20.04■□□□□ 0.8
LMO3-213ENST00000536172 WRNQ14191 1432 aaPredicted RBP eCLIP19.97■□□□□ 0.79
LMO3-213ENST00000536172 SUPT5HO00267 1087 aaKnown RBP19.95■□□□□ 0.78
LMO3-213ENST00000536172 BIVM-ERCC5R4GMW8 1640 aa19.93■□□□□ 0.78
LMO3-213ENST00000536172 TOP2BQ02880 1626 aa19.92■□□□□ 0.78
LMO3-213ENST00000536172 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
LMO3-213ENST00000536172 ADAMTS12P58397 1594 aa19.89■□□□□ 0.77
LMO3-213ENST00000536172 NUP160Q12769 1436 aa19.85■□□□□ 0.77
LMO3-213ENST00000536172 ERICH3Q5RHP9 1530 aa19.84■□□□□ 0.77
LMO3-213ENST00000536172 FHAD1B1AJZ9 1412 aa19.84■□□□□ 0.77
LMO3-213ENST00000536172 CEP170Q5SW79 1584 aa19.82■□□□□ 0.76
LMO3-213ENST00000536172 SHROOM2Q13796 1616 aa19.8■□□□□ 0.76
LMO3-213ENST00000536172 ERCC6L2Q5T890 1561 aa19.76■□□□□ 0.75
LMO3-213ENST00000536172 PRG4Q92954 1404 aaPredicted RBP19.65■□□□□ 0.74
LMO3-213ENST00000536172 JPH4Q96JJ6 628 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms