RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 NISCHQ9Y2I1 1504 aa32.55■■■□□ 2.8
CLSTN3-205ENST00000535452 CCDC180Q9P1Z9 1646 aa29.21■■■□□ 2.27
CLSTN3-205ENST00000535452 ABCC9O60706 1549 aa29.16■■■□□ 2.26
CLSTN3-205ENST00000535452 RB1CC1Q8TDY2 1594 aa27.86■■■□□ 2.05
CLSTN3-205ENST00000535452 DCAF8L2P0C7V8 631 aa27.72■■■□□ 2.03
CLSTN3-205ENST00000535452 NACADO15069 1562 aa27.65■■■□□ 2.02
CLSTN3-205ENST00000535452 MYO15BQ96JP2 1530 aa27.24■■□□□ 1.95
CLSTN3-205ENST00000535452 PABPN1Q86U42 306 aaKnown RBP eCLIP27.17■■□□□ 1.94
CLSTN3-205ENST00000535452 DNAJC5BQ9UF47 199 aa27.09■■□□□ 1.93
CLSTN3-205ENST00000535452 UNC13AQ9UPW8 1703 aa26.98■■□□□ 1.91
CLSTN3-205ENST00000535452 ZCCHC6Q5VYS8 1495 aaKnown RBP26.97■■□□□ 1.91
CLSTN3-205ENST00000535452 DCAF1Q9Y4B6 1507 aa26.9■■□□□ 1.9
CLSTN3-205ENST00000535452 BICRAQ9NZM4 1560 aa26.8■■□□□ 1.88
CLSTN3-205ENST00000535452 SHROOM4Q9ULL8 1493 aa26.69■■□□□ 1.86
CLSTN3-205ENST00000535452 SCRIBQ14160 1630 aa26.63■■□□□ 1.85
CLSTN3-205ENST00000535452 CC2D2AQ9P2K1 1620 aa26.3■■□□□ 1.8
CLSTN3-205ENST00000535452 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
CLSTN3-205ENST00000535452 EIF4G1Q04637 1599 aaKnown RBP26.28■■□□□ 1.8
CLSTN3-205ENST00000535452 NCAPD3P42695 1498 aa25.47■■□□□ 1.67
CLSTN3-205ENST00000535452 SMARCA2P51531 1590 aa25.43■■□□□ 1.66
CLSTN3-205ENST00000535452 ATAD2BQ9ULI0 1458 aa25.39■■□□□ 1.65
CLSTN3-205ENST00000535452 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
CLSTN3-205ENST00000535452 BAZ1AQ9NRL2 1556 aaPredicted RBP25.36■■□□□ 1.65
CLSTN3-205ENST00000535452 ERCC6Q03468 1493 aa25.34■■□□□ 1.65
CLSTN3-205ENST00000535452 HMGXB3Q12766 1538 aa25.31■■□□□ 1.64
CLSTN3-205ENST00000535452 BAZ1BQ9UIG0 1483 aaKnown RBP25.27■■□□□ 1.64
CLSTN3-205ENST00000535452 CUX2O14529 1486 aa25.17■■□□□ 1.62
CLSTN3-205ENST00000535452 PEG3Q9GZU2 1588 aa25.1■■□□□ 1.61
CLSTN3-205ENST00000535452 MROH2BQ7Z745 1585 aa25.02■■□□□ 1.6
CLSTN3-205ENST00000535452 DNAJC5Q9H3Z4 198 aa25.02■■□□□ 1.6
CLSTN3-205ENST00000535452 NESP48681 1621 aa24.97■■□□□ 1.59
CLSTN3-205ENST00000535452 LAMC3Q9Y6N6 1575 aa24.95■■□□□ 1.58
CLSTN3-205ENST00000535452 PDS5BQ9NTI5 1447 aa24.9■■□□□ 1.58
CLSTN3-205ENST00000535452 CADPSQ9ULU8 1353 aa24.76■■□□□ 1.55
CLSTN3-205ENST00000535452 WIZO95785 1651 aa24.74■■□□□ 1.55
CLSTN3-205ENST00000535452 THOC2Q8NI27 1593 aaKnown RBP24.71■■□□□ 1.55
CLSTN3-205ENST00000535452 KIF21AQ7Z4S6 1674 aa24.67■■□□□ 1.54
CLSTN3-205ENST00000535452 MRC2Q9UBG0 1479 aa24.59■■□□□ 1.53
CLSTN3-205ENST00000535452 RSF1Q96T23 1441 aaPredicted RBP24.57■■□□□ 1.52
CLSTN3-205ENST00000535452 CEP164Q9UPV0 1460 aa24.55■■□□□ 1.52
CLSTN3-205ENST00000535452 TOP2AP11388 1531 aaKnown RBP24.51■■□□□ 1.51
CLSTN3-205ENST00000535452 FANCD2Q9BXW9 1451 aa24.48■■□□□ 1.51
CLSTN3-205ENST00000535452 WDR62O43379 1518 aa24.46■■□□□ 1.51
CLSTN3-205ENST00000535452 CFTRP13569 1480 aa24.44■■□□□ 1.5
CLSTN3-205ENST00000535452 CCDC88BA6NC98 1476 aa24.19■■□□□ 1.46
CLSTN3-205ENST00000535452 PRDM2Q13029 1718 aa24.18■■□□□ 1.46
CLSTN3-205ENST00000535452 URB2Q14146 1524 aaKnown RBP24.15■■□□□ 1.46
CLSTN3-205ENST00000535452 OSCARQ8IYS5 282 aa24.12■■□□□ 1.45
CLSTN3-205ENST00000535452 TRIM41Q8WV44 630 aa24.1■■□□□ 1.45
CLSTN3-205ENST00000535452 ABCC8Q09428 1581 aa24.08■■□□□ 1.45
CLSTN3-205ENST00000535452 IFT140Q96RY7 1462 aa24.04■■□□□ 1.44
CLSTN3-205ENST00000535452 TOPBP1Q92547 1522 aa23.97■■□□□ 1.43
CLSTN3-205ENST00000535452 DNMBPQ6XZF7 1577 aa23.92■■□□□ 1.42
CLSTN3-205ENST00000535452 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
CLSTN3-205ENST00000535452 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
CLSTN3-205ENST00000535452 FBLN2P98095 1184 aa23.75■■□□□ 1.39
CLSTN3-205ENST00000535452 SUPT5HO00267 1087 aaKnown RBP23.73■■□□□ 1.39
CLSTN3-205ENST00000535452 POLA1P09884 1462 aaPredicted RBP23.72■■□□□ 1.39
CLSTN3-205ENST00000535452 AQRO60306 1485 aaKnown RBP eCLIP23.7■■□□□ 1.386e-9■■■■■ 30.6
CLSTN3-205ENST00000535452 SOGA1O94964 1423 aa23.7■■□□□ 1.38
CLSTN3-205ENST00000535452 TARBP1Q13395 1621 aaKnown RBP23.67■■□□□ 1.38
CLSTN3-205ENST00000535452 FGD5Q6ZNL6 1462 aa23.62■■□□□ 1.37
CLSTN3-205ENST00000535452 RAD54L2Q9Y4B4 1467 aa23.62■■□□□ 1.37
CLSTN3-205ENST00000535452 RIMBP3CA6NJZ7 1639 aa23.61■■□□□ 1.37
CLSTN3-205ENST00000535452 RIMBP3BA6NNM3 1639 aa23.61■■□□□ 1.37
CLSTN3-205ENST00000535452 RIMBP3Q9UFD9 1639 aa23.61■■□□□ 1.37
CLSTN3-205ENST00000535452 TDRD9Q8NDG6 1382 aaKnown RBP23.61■■□□□ 1.37
CLSTN3-205ENST00000535452 WDR97A6NE52 1622 aa23.6■■□□□ 1.37
CLSTN3-205ENST00000535452 ARHGEF11O15085 1522 aa23.59■■□□□ 1.37
CLSTN3-205ENST00000535452 CHMP7Q8WUX9 453 aaPredicted RBP23.58■■□□□ 1.37
CLSTN3-205ENST00000535452 CHD1O14646 1710 aa23.56■■□□□ 1.36
CLSTN3-205ENST00000535452 CYB5RLQ6IPT4 315 aa23.52■■□□□ 1.36
CLSTN3-205ENST00000535452 CUX1P39880 1505 aa23.52■■□□□ 1.36
CLSTN3-205ENST00000535452 SNAPC4Q5SXM2 1469 aa23.5■■□□□ 1.35
CLSTN3-205ENST00000535452 GRIN2BQ13224 1484 aa23.49■■□□□ 1.35
CLSTN3-205ENST00000535452 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
CLSTN3-205ENST00000535452 SYNJ1O43426 1573 aa23.44■■□□□ 1.34
CLSTN3-205ENST00000535452 GAPVD1Q14C86 1478 aa23.42■■□□□ 1.34
CLSTN3-205ENST00000535452 SYNJ2O15056 1496 aa23.39■■□□□ 1.34
CLSTN3-205ENST00000535452 WRNQ14191 1432 aaPredicted RBP eCLIP23.38■■□□□ 1.33
CLSTN3-205ENST00000535452 TRHP20396 242 aaPredicted RBP23.37■■□□□ 1.33
CLSTN3-205ENST00000535452 ABCA10Q8WWZ4 1543 aa23.34■■□□□ 1.33
CLSTN3-205ENST00000535452 PBRM1Q86U86 1689 aa23.32■■□□□ 1.32
CLSTN3-205ENST00000535452 ARAP1Q96P48 1450 aa23.3■■□□□ 1.32
CLSTN3-205ENST00000535452 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.32
CLSTN3-205ENST00000535452 ABCA5Q8WWZ7 1642 aa23.24■■□□□ 1.31
CLSTN3-205ENST00000535452 TOP2BQ02880 1626 aa23.22■■□□□ 1.31
CLSTN3-205ENST00000535452 BIVM-ERCC5R4GMW8 1640 aa23.19■■□□□ 1.3
CLSTN3-205ENST00000535452 GRIN2AQ12879 1464 aa23.16■■□□□ 1.3
CLSTN3-205ENST00000535452 FHAD1B1AJZ9 1412 aa23.13■■□□□ 1.29
CLSTN3-205ENST00000535452 ADAMTS12P58397 1594 aa23.1■■□□□ 1.29
CLSTN3-205ENST00000535452 ERICH3Q5RHP9 1530 aa23.09■■□□□ 1.29
CLSTN3-205ENST00000535452 NUP160Q12769 1436 aa23.02■■□□□ 1.28
CLSTN3-205ENST00000535452 CEP170Q5SW79 1584 aa22.97■■□□□ 1.27
CLSTN3-205ENST00000535452 KIF27Q86VH2 1401 aa22.92■■□□□ 1.26
CLSTN3-205ENST00000535452 JPH4Q96JJ6 628 aa22.9■■□□□ 1.26
CLSTN3-205ENST00000535452 NPM1P06748 294 aaKnown RBP eCLIP22.88■■□□□ 1.25
CLSTN3-205ENST00000535452 PRG4Q92954 1404 aaPredicted RBP22.88■■□□□ 1.25
CLSTN3-205ENST00000535452 SHROOM2Q13796 1616 aa22.86■■□□□ 1.25
CLSTN3-205ENST00000535452 ERCC6L2Q5T890 1561 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms