RNA–Protein interactions for RNA: ENST00000534830.5

CLSTN3-203, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-203ENST00000534830 NISCHQ9Y2I1 1504 aa25.13■■□□□ 1.61
CLSTN3-203ENST00000534830 ABCC9O60706 1549 aa23.33■■□□□ 1.33
CLSTN3-203ENST00000534830 CCDC180Q9P1Z9 1646 aa22.71■■□□□ 1.23
CLSTN3-203ENST00000534830 DNAJC5BQ9UF47 199 aa22.37■■□□□ 1.17
CLSTN3-203ENST00000534830 RB1CC1Q8TDY2 1594 aa21.92■■□□□ 1.1
CLSTN3-203ENST00000534830 PABPN1Q86U42 306 aaKnown RBP eCLIP21.67■■□□□ 1.06
CLSTN3-203ENST00000534830 NACADO15069 1562 aa21.62■■□□□ 1.05
CLSTN3-203ENST00000534830 DCAF8L2P0C7V8 631 aa21.54■■□□□ 1.04
CLSTN3-203ENST00000534830 UNC13AQ9UPW8 1703 aa21.43■■□□□ 1.02
CLSTN3-203ENST00000534830 BICRAQ9NZM4 1560 aa21.28■■□□□ 1
CLSTN3-203ENST00000534830 MYO15BQ96JP2 1530 aa21.09■□□□□ 0.97
CLSTN3-203ENST00000534830 CECR2Q9BXF3 1484 aa21.06■□□□□ 0.96
CLSTN3-203ENST00000534830 CC2D2AQ9P2K1 1620 aa21.02■□□□□ 0.96
CLSTN3-203ENST00000534830 DNAJC5Q9H3Z4 198 aa21.01■□□□□ 0.95
CLSTN3-203ENST00000534830 SHROOM4Q9ULL8 1493 aa20.89■□□□□ 0.94
CLSTN3-203ENST00000534830 ZCCHC6Q5VYS8 1495 aaKnown RBP20.87■□□□□ 0.93
CLSTN3-203ENST00000534830 EIF4G1Q04637 1599 aaKnown RBP20.82■□□□□ 0.92
CLSTN3-203ENST00000534830 DCAF1Q9Y4B6 1507 aa20.81■□□□□ 0.92
CLSTN3-203ENST00000534830 SCRIBQ14160 1630 aa20.73■□□□□ 0.91
CLSTN3-203ENST00000534830 CUX2O14529 1486 aa20.29■□□□□ 0.84
CLSTN3-203ENST00000534830 ERCC6Q03468 1493 aa20.2■□□□□ 0.82
CLSTN3-203ENST00000534830 NCAPD3P42695 1498 aa19.96■□□□□ 0.79
CLSTN3-203ENST00000534830 NESP48681 1621 aa19.87■□□□□ 0.77
CLSTN3-203ENST00000534830 TRIM41Q8WV44 630 aa19.87■□□□□ 0.77
CLSTN3-203ENST00000534830 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
CLSTN3-203ENST00000534830 SMARCA2P51531 1590 aa19.75■□□□□ 0.75
CLSTN3-203ENST00000534830 HMGXB3Q12766 1538 aa19.75■□□□□ 0.75
CLSTN3-203ENST00000534830 THOC2Q8NI27 1593 aaKnown RBP19.74■□□□□ 0.75
CLSTN3-203ENST00000534830 SMARCA4P51532 1647 aa19.68■□□□□ 0.74
CLSTN3-203ENST00000534830 BAZ1BQ9UIG0 1483 aaKnown RBP19.64■□□□□ 0.73
CLSTN3-203ENST00000534830 LAMC3Q9Y6N6 1575 aa19.61■□□□□ 0.73
CLSTN3-203ENST00000534830 KIF21AQ7Z4S6 1674 aa19.59■□□□□ 0.73
CLSTN3-203ENST00000534830 PDS5BQ9NTI5 1447 aa19.55■□□□□ 0.72
CLSTN3-203ENST00000534830 BAZ1AQ9NRL2 1556 aaPredicted RBP19.49■□□□□ 0.71
CLSTN3-203ENST00000534830 PEG3Q9GZU2 1588 aa19.44■□□□□ 0.7
CLSTN3-203ENST00000534830 MRC2Q9UBG0 1479 aa19.4■□□□□ 0.7
CLSTN3-203ENST00000534830 MROH2BQ7Z745 1585 aa19.36■□□□□ 0.69
CLSTN3-203ENST00000534830 CADPSQ9ULU8 1353 aa19.35■□□□□ 0.69
CLSTN3-203ENST00000534830 WDR62O43379 1518 aa19.34■□□□□ 0.69
CLSTN3-203ENST00000534830 OSCARQ8IYS5 282 aa19.33■□□□□ 0.68
CLSTN3-203ENST00000534830 CEP164Q9UPV0 1460 aa19.22■□□□□ 0.67
CLSTN3-203ENST00000534830 FANCD2Q9BXW9 1451 aa19.15■□□□□ 0.66
CLSTN3-203ENST00000534830 WIZO95785 1651 aa19.14■□□□□ 0.65
CLSTN3-203ENST00000534830 RIMBP3CA6NJZ7 1639 aa19.11■□□□□ 0.65
CLSTN3-203ENST00000534830 RIMBP3BA6NNM3 1639 aa19.11■□□□□ 0.65
CLSTN3-203ENST00000534830 RIMBP3Q9UFD9 1639 aa19.11■□□□□ 0.65
CLSTN3-203ENST00000534830 RSF1Q96T23 1441 aaPredicted RBP19.02■□□□□ 0.64
CLSTN3-203ENST00000534830 URB2Q14146 1524 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-203ENST00000534830 CFTRP13569 1480 aa19■□□□□ 0.63
CLSTN3-203ENST00000534830 ARHGEF11O15085 1522 aa18.98■□□□□ 0.63
CLSTN3-203ENST00000534830 TRHP20396 242 aaPredicted RBP18.95■□□□□ 0.62
CLSTN3-203ENST00000534830 CYB5RLQ6IPT4 315 aa18.95■□□□□ 0.62
CLSTN3-203ENST00000534830 TOP2AP11388 1531 aaKnown RBP18.9■□□□□ 0.62
CLSTN3-203ENST00000534830 ZNF608Q9ULD9 1512 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-203ENST00000534830 IFT140Q96RY7 1462 aa18.84■□□□□ 0.61
CLSTN3-203ENST00000534830 AEBP2Q6ZN18 517 aaPredicted RBP18.81■□□□□ 0.6
CLSTN3-203ENST00000534830 PRDM2Q13029 1718 aa18.77■□□□□ 0.59
CLSTN3-203ENST00000534830 ARAP1Q96P48 1450 aa18.76■□□□□ 0.59
CLSTN3-203ENST00000534830 EIF4G3O43432 1585 aaKnown RBP18.73■□□□□ 0.59
CLSTN3-203ENST00000534830 CHD1O14646 1710 aa18.72■□□□□ 0.59
CLSTN3-203ENST00000534830 FBLN2P98095 1184 aa18.72■□□□□ 0.59
CLSTN3-203ENST00000534830 TOPBP1Q92547 1522 aa18.71■□□□□ 0.59
CLSTN3-203ENST00000534830 CCDC88BA6NC98 1476 aa18.69■□□□□ 0.58
CLSTN3-203ENST00000534830 AQRO60306 1485 aaKnown RBP eCLIP18.65■□□□□ 0.586e-9■■■■■ 30.6
CLSTN3-203ENST00000534830 ABCC8Q09428 1581 aa18.62■□□□□ 0.57
CLSTN3-203ENST00000534830 DNMBPQ6XZF7 1577 aa18.59■□□□□ 0.57
CLSTN3-203ENST00000534830 TARBP1Q13395 1621 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-203ENST00000534830 POLA1P09884 1462 aaPredicted RBP18.48■□□□□ 0.55
CLSTN3-203ENST00000534830 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
CLSTN3-203ENST00000534830 RAD54L2Q9Y4B4 1467 aa18.46■□□□□ 0.54
CLSTN3-203ENST00000534830 CLASP1Q7Z460 1538 aa18.45■□□□□ 0.54
CLSTN3-203ENST00000534830 CHMP7Q8WUX9 453 aaPredicted RBP18.45■□□□□ 0.54
CLSTN3-203ENST00000534830 SNAPC4Q5SXM2 1469 aa18.45■□□□□ 0.54
CLSTN3-203ENST00000534830 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
CLSTN3-203ENST00000534830 SOGA1O94964 1423 aa18.42■□□□□ 0.54
CLSTN3-203ENST00000534830 MAGI1Q96QZ7 1491 aaPredicted RBP18.34■□□□□ 0.53
CLSTN3-203ENST00000534830 GAPVD1Q14C86 1478 aa18.33■□□□□ 0.53
CLSTN3-203ENST00000534830 WDR97A6NE52 1622 aa18.31■□□□□ 0.52
CLSTN3-203ENST00000534830 SYNJ2O15056 1496 aa18.3■□□□□ 0.52
CLSTN3-203ENST00000534830 GRIN2BQ13224 1484 aa18.3■□□□□ 0.52
CLSTN3-203ENST00000534830 FGD5Q6ZNL6 1462 aa18.3■□□□□ 0.52
CLSTN3-203ENST00000534830 CUX1P39880 1505 aa18.19■□□□□ 0.5
CLSTN3-203ENST00000534830 PBRM1Q86U86 1689 aa18.19■□□□□ 0.5
CLSTN3-203ENST00000534830 SUPT5HO00267 1087 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-203ENST00000534830 ERCC6L2Q5T890 1561 aa18.17■□□□□ 0.5
CLSTN3-203ENST00000534830 KIF13AQ9H1H9 1805 aa18.08■□□□□ 0.48
CLSTN3-203ENST00000534830 CEP170Q5SW79 1584 aa18.07■□□□□ 0.48
CLSTN3-203ENST00000534830 GRIN2AQ12879 1464 aa18.06■□□□□ 0.48
CLSTN3-203ENST00000534830 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
CLSTN3-203ENST00000534830 ABCA10Q8WWZ4 1543 aa18.03■□□□□ 0.48
CLSTN3-203ENST00000534830 ILDR1Q86SU0 546 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-203ENST00000534830 NUP160Q12769 1436 aa18■□□□□ 0.47
CLSTN3-203ENST00000534830 FAM69CQ0P6D2 419 aa17.98■□□□□ 0.47
CLSTN3-203ENST00000534830 SHROOM2Q13796 1616 aa17.98■□□□□ 0.47
CLSTN3-203ENST00000534830 ADAMTS12P58397 1594 aa17.97■□□□□ 0.47
CLSTN3-203ENST00000534830 BIVM-ERCC5R4GMW8 1640 aa17.95■□□□□ 0.46
CLSTN3-203ENST00000534830 KDM4FA0A1W2PPD8 638 aa17.95■□□□□ 0.46
CLSTN3-203ENST00000534830 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
CLSTN3-203ENST00000534830 NPM1P06748 294 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLSTN3-203ENST00000534830 PRG4Q92954 1404 aaPredicted RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms