RNA–Protein interactions for RNA: ENST00000534091.1

LDLRAD3-206, Transcript of low density lipoprotein receptor class A domain containing 3, humanhuman

TSL 4

Gene LDLRAD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD3-206ENST00000534091 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
LDLRAD3-206ENST00000534091 CCDC180Q9P1Z9 1646 aa21.3■■□□□ 1
LDLRAD3-206ENST00000534091 ABCC9O60706 1549 aa20.75■□□□□ 0.91
LDLRAD3-206ENST00000534091 RB1CC1Q8TDY2 1594 aa20.07■□□□□ 0.8
LDLRAD3-206ENST00000534091 NACADO15069 1562 aa20.05■□□□□ 0.8
LDLRAD3-206ENST00000534091 MYO15BQ96JP2 1530 aa19.97■□□□□ 0.79
LDLRAD3-206ENST00000534091 ZCCHC6Q5VYS8 1495 aaKnown RBP19.82■□□□□ 0.76
LDLRAD3-206ENST00000534091 DCAF1Q9Y4B6 1507 aa19.81■□□□□ 0.76
LDLRAD3-206ENST00000534091 DCAF8L2P0C7V8 631 aa19.77■□□□□ 0.76
LDLRAD3-206ENST00000534091 UNC13AQ9UPW8 1703 aa19.54■□□□□ 0.72
LDLRAD3-206ENST00000534091 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
LDLRAD3-206ENST00000534091 SHROOM4Q9ULL8 1493 aa19.38■□□□□ 0.69
LDLRAD3-206ENST00000534091 PABPN1Q86U42 306 aaKnown RBP eCLIP19.32■□□□□ 0.68
LDLRAD3-206ENST00000534091 SCRIBQ14160 1630 aa19.25■□□□□ 0.67
LDLRAD3-206ENST00000534091 DNAJC5BQ9UF47 199 aa19.09■□□□□ 0.65
LDLRAD3-206ENST00000534091 EIF4G1Q04637 1599 aaKnown RBP18.9■□□□□ 0.62
LDLRAD3-206ENST00000534091 CC2D2AQ9P2K1 1620 aa18.83■□□□□ 0.61
LDLRAD3-206ENST00000534091 CECR2Q9BXF3 1484 aa18.72■□□□□ 0.59
LDLRAD3-206ENST00000534091 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
LDLRAD3-206ENST00000534091 SMARCA4P51532 1647 aa18.49■□□□□ 0.55
LDLRAD3-206ENST00000534091 NCAPD3P42695 1498 aa18.48■□□□□ 0.55
LDLRAD3-206ENST00000534091 SMARCA2P51531 1590 aa18.45■□□□□ 0.54
LDLRAD3-206ENST00000534091 ATAD2BQ9ULI0 1458 aa18.42■□□□□ 0.54
LDLRAD3-206ENST00000534091 HMGXB3Q12766 1538 aa18.39■□□□□ 0.54
LDLRAD3-206ENST00000534091 PEG3Q9GZU2 1588 aa18.39■□□□□ 0.53
LDLRAD3-206ENST00000534091 MROH2BQ7Z745 1585 aa18.28■□□□□ 0.52
LDLRAD3-206ENST00000534091 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
LDLRAD3-206ENST00000534091 WIZO95785 1651 aa18.07■□□□□ 0.48
LDLRAD3-206ENST00000534091 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
LDLRAD3-206ENST00000534091 LAMC3Q9Y6N6 1575 aa18.02■□□□□ 0.48
LDLRAD3-206ENST00000534091 ERCC6Q03468 1493 aa17.95■□□□□ 0.46
LDLRAD3-206ENST00000534091 TOP2AP11388 1531 aaKnown RBP17.95■□□□□ 0.46
LDLRAD3-206ENST00000534091 NESP48681 1621 aa17.9■□□□□ 0.46
LDLRAD3-206ENST00000534091 CUX2O14529 1486 aa17.9■□□□□ 0.46
LDLRAD3-206ENST00000534091 CADPSQ9ULU8 1353 aa17.9■□□□□ 0.46
LDLRAD3-206ENST00000534091 PDS5BQ9NTI5 1447 aa17.89■□□□□ 0.45
LDLRAD3-206ENST00000534091 SUPT5HO00267 1087 aaKnown RBP17.8■□□□□ 0.44
LDLRAD3-206ENST00000534091 CFTRP13569 1480 aa17.78■□□□□ 0.44
LDLRAD3-206ENST00000534091 THOC2Q8NI27 1593 aaKnown RBP17.75■□□□□ 0.43
LDLRAD3-206ENST00000534091 KIF21AQ7Z4S6 1674 aa17.75■□□□□ 0.43
LDLRAD3-206ENST00000534091 CCDC88BA6NC98 1476 aa17.69■□□□□ 0.42
LDLRAD3-206ENST00000534091 PRDM2Q13029 1718 aa17.68■□□□□ 0.42
LDLRAD3-206ENST00000534091 MRC2Q9UBG0 1479 aa17.67■□□□□ 0.42
LDLRAD3-206ENST00000534091 CEP164Q9UPV0 1460 aa17.67■□□□□ 0.42
LDLRAD3-206ENST00000534091 FANCD2Q9BXW9 1451 aa17.66■□□□□ 0.42
LDLRAD3-206ENST00000534091 WDR62O43379 1518 aa17.62■□□□□ 0.41
LDLRAD3-206ENST00000534091 ABCC8Q09428 1581 aa17.49■□□□□ 0.39
LDLRAD3-206ENST00000534091 URB2Q14146 1524 aaKnown RBP17.47■□□□□ 0.39
LDLRAD3-206ENST00000534091 DNAJC5Q9H3Z4 198 aa17.41■□□□□ 0.38
LDLRAD3-206ENST00000534091 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
LDLRAD3-206ENST00000534091 DNMBPQ6XZF7 1577 aa17.37■□□□□ 0.37
LDLRAD3-206ENST00000534091 IFT140Q96RY7 1462 aa17.33■□□□□ 0.37
LDLRAD3-206ENST00000534091 POLA1P09884 1462 aaPredicted RBP17.21■□□□□ 0.35
LDLRAD3-206ENST00000534091 WDR97A6NE52 1622 aa17.2■□□□□ 0.34
LDLRAD3-206ENST00000534091 TARBP1Q13395 1621 aaKnown RBP17.19■□□□□ 0.34
LDLRAD3-206ENST00000534091 CUX1P39880 1505 aa17.16■□□□□ 0.34
LDLRAD3-206ENST00000534091 ZNF608Q9ULD9 1512 aaPredicted RBP17.15■□□□□ 0.34
LDLRAD3-206ENST00000534091 SOGA1O94964 1423 aa17.14■□□□□ 0.33
LDLRAD3-206ENST00000534091 FGD5Q6ZNL6 1462 aa17.13■□□□□ 0.33
LDLRAD3-206ENST00000534091 EIF4G3O43432 1585 aaKnown RBP17.13■□□□□ 0.33
LDLRAD3-206ENST00000534091 OSCARQ8IYS5 282 aa17.09■□□□□ 0.33
LDLRAD3-206ENST00000534091 CHIC1Q5VXU3 224 aa17.08■□□□□ 0.32
LDLRAD3-206ENST00000534091 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
LDLRAD3-206ENST00000534091 TOP2BQ02880 1626 aa17.06■□□□□ 0.32
LDLRAD3-206ENST00000534091 BIVM-ERCC5R4GMW8 1640 aa17.06■□□□□ 0.32
LDLRAD3-206ENST00000534091 WRNQ14191 1432 aaPredicted RBP eCLIP17.05■□□□□ 0.32
LDLRAD3-206ENST00000534091 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.32
LDLRAD3-206ENST00000534091 ABCA10Q8WWZ4 1543 aa17.03■□□□□ 0.32
LDLRAD3-206ENST00000534091 TDRD9Q8NDG6 1382 aaKnown RBP17■□□□□ 0.31
LDLRAD3-206ENST00000534091 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
LDLRAD3-206ENST00000534091 MAGI1Q96QZ7 1491 aaPredicted RBP16.99■□□□□ 0.31
LDLRAD3-206ENST00000534091 SYNJ1O43426 1573 aa16.96■□□□□ 0.31
LDLRAD3-206ENST00000534091 GAPVD1Q14C86 1478 aa16.95■□□□□ 0.3
LDLRAD3-206ENST00000534091 ABCA5Q8WWZ7 1642 aa16.95■□□□□ 0.3
LDLRAD3-206ENST00000534091 CHD1O14646 1710 aa16.93■□□□□ 0.3
LDLRAD3-206ENST00000534091 SNAPC4Q5SXM2 1469 aa16.92■□□□□ 0.3
LDLRAD3-206ENST00000534091 PBRM1Q86U86 1689 aa16.91■□□□□ 0.3
LDLRAD3-206ENST00000534091 SYNJ2O15056 1496 aa16.9■□□□□ 0.3
LDLRAD3-206ENST00000534091 CHMP7Q8WUX9 453 aaPredicted RBP16.85■□□□□ 0.29
LDLRAD3-206ENST00000534091 ERICH3Q5RHP9 1530 aa16.85■□□□□ 0.29
LDLRAD3-206ENST00000534091 FBLN2P98095 1184 aa16.83■□□□□ 0.28
LDLRAD3-206ENST00000534091 TRIM41Q8WV44 630 aa16.81■□□□□ 0.28
LDLRAD3-206ENST00000534091 FHAD1B1AJZ9 1412 aa16.79■□□□□ 0.28
LDLRAD3-206ENST00000534091 RIMBP3CA6NJZ7 1639 aa16.78■□□□□ 0.28
LDLRAD3-206ENST00000534091 RIMBP3BA6NNM3 1639 aa16.78■□□□□ 0.28
LDLRAD3-206ENST00000534091 RIMBP3Q9UFD9 1639 aa16.78■□□□□ 0.28
LDLRAD3-206ENST00000534091 ARHGEF11O15085 1522 aa16.78■□□□□ 0.28
LDLRAD3-206ENST00000534091 CLASP1Q7Z460 1538 aa16.78■□□□□ 0.28
LDLRAD3-206ENST00000534091 ADAMTS12P58397 1594 aa16.77■□□□□ 0.28
LDLRAD3-206ENST00000534091 GRIN2AQ12879 1464 aa16.75■□□□□ 0.27
LDLRAD3-206ENST00000534091 KIF27Q86VH2 1401 aa16.74■□□□□ 0.27
LDLRAD3-206ENST00000534091 NUP160Q12769 1436 aa16.7■□□□□ 0.26
LDLRAD3-206ENST00000534091 CUL7Q14999 1698 aa16.68■□□□□ 0.26
LDLRAD3-206ENST00000534091 IGF1RP08069 1367 aa16.64■□□□□ 0.26
LDLRAD3-206ENST00000534091 CEP170Q5SW79 1584 aa16.63■□□□□ 0.25
LDLRAD3-206ENST00000534091 ARAP1Q96P48 1450 aa16.61■□□□□ 0.25
LDLRAD3-206ENST00000534091 EEA1Q15075 1411 aa16.6■□□□□ 0.25
LDLRAD3-206ENST00000534091 SHROOM2Q13796 1616 aa16.59■□□□□ 0.25
LDLRAD3-206ENST00000534091 CYB5RLQ6IPT4 315 aa16.57■□□□□ 0.24
LDLRAD3-206ENST00000534091 CARMIL1Q5VZK9 1371 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms