RNA–Protein interactions for RNA: ENST00000533756.5

PACS1-213, Transcript of phosphofurin acidic cluster sorting protein 1, humanhuman

TSL 4

Gene PACS1, Length 578 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PACS1-213ENST00000533756 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
PACS1-213ENST00000533756 ABCC9O60706 1549 aa22.48■■□□□ 1.19
PACS1-213ENST00000533756 DNAJC5BQ9UF47 199 aa22■■□□□ 1.11
PACS1-213ENST00000533756 AEBP2Q6ZN18 517 aaPredicted RBP21.88■■□□□ 1.09
PACS1-213ENST00000533756 CCDC180Q9P1Z9 1646 aa21.56■■□□□ 1.04
PACS1-213ENST00000533756 RB1CC1Q8TDY2 1594 aa21.02■□□□□ 0.95
PACS1-213ENST00000533756 CHIC1Q5VXU3 224 aa20.99■□□□□ 0.95
PACS1-213ENST00000533756 DNAJC5Q9H3Z4 198 aa20.98■□□□□ 0.95
PACS1-213ENST00000533756 PABPN1Q86U42 306 aaKnown RBP eCLIP20.8■□□□□ 0.92
PACS1-213ENST00000533756 NACADO15069 1562 aa20.66■□□□□ 0.9
PACS1-213ENST00000533756 UNC13AQ9UPW8 1703 aa20.42■□□□□ 0.86
PACS1-213ENST00000533756 BICRAQ9NZM4 1560 aa20.41■□□□□ 0.86
PACS1-213ENST00000533756 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
PACS1-213ENST00000533756 DCAF8L2P0C7V8 631 aa20.32■□□□□ 0.84
PACS1-213ENST00000533756 CC2D2AQ9P2K1 1620 aa20.26■□□□□ 0.83
PACS1-213ENST00000533756 SHROOM4Q9ULL8 1493 aa20.13■□□□□ 0.81
PACS1-213ENST00000533756 MYO15BQ96JP2 1530 aa20.11■□□□□ 0.81
PACS1-213ENST00000533756 EIF4G1Q04637 1599 aaKnown RBP20■□□□□ 0.79
PACS1-213ENST00000533756 CUX2O14529 1486 aa19.84■□□□□ 0.77
PACS1-213ENST00000533756 TRIM41Q8WV44 630 aa19.56■□□□□ 0.72
PACS1-213ENST00000533756 SCRIBQ14160 1630 aa19.54■□□□□ 0.72
PACS1-213ENST00000533756 ERCC6Q03468 1493 aa19.5■□□□□ 0.71
PACS1-213ENST00000533756 DCAF1Q9Y4B6 1507 aa19.47■□□□□ 0.71
PACS1-213ENST00000533756 ZCCHC6Q5VYS8 1495 aaKnown RBP19.33■□□□□ 0.68
PACS1-213ENST00000533756 NCAPD3P42695 1498 aa19.12■□□□□ 0.65
PACS1-213ENST00000533756 NESP48681 1621 aa19.03■□□□□ 0.64
PACS1-213ENST00000533756 THOC2Q8NI27 1593 aaKnown RBP19.02■□□□□ 0.64
PACS1-213ENST00000533756 ATAD2BQ9ULI0 1458 aa18.88■□□□□ 0.61
PACS1-213ENST00000533756 HMGXB3Q12766 1538 aa18.84■□□□□ 0.61
PACS1-213ENST00000533756 OSCARQ8IYS5 282 aa18.82■□□□□ 0.6
PACS1-213ENST00000533756 SMARCA2P51531 1590 aa18.81■□□□□ 0.6
PACS1-213ENST00000533756 LAMC3Q9Y6N6 1575 aa18.8■□□□□ 0.6
PACS1-213ENST00000533756 PDS5BQ9NTI5 1447 aa18.75■□□□□ 0.59
PACS1-213ENST00000533756 BAZ1AQ9NRL2 1556 aaPredicted RBP18.72■□□□□ 0.59
PACS1-213ENST00000533756 KIF21AQ7Z4S6 1674 aa18.71■□□□□ 0.59
PACS1-213ENST00000533756 SENP3Q9H4L4 574 aaPredicted RBP18.65■□□□□ 0.58
PACS1-213ENST00000533756 BAZ1BQ9UIG0 1483 aaKnown RBP18.63■□□□□ 0.57
PACS1-213ENST00000533756 MRC2Q9UBG0 1479 aa18.6■□□□□ 0.57
PACS1-213ENST00000533756 WDR62O43379 1518 aa18.59■□□□□ 0.57
PACS1-213ENST00000533756 SMARCA4P51532 1647 aa18.57■□□□□ 0.56
PACS1-213ENST00000533756 RIMBP3CA6NJZ7 1639 aa18.56■□□□□ 0.56
PACS1-213ENST00000533756 RIMBP3BA6NNM3 1639 aa18.56■□□□□ 0.56
PACS1-213ENST00000533756 RIMBP3Q9UFD9 1639 aa18.56■□□□□ 0.56
PACS1-213ENST00000533756 TRHP20396 242 aaPredicted RBP18.5■□□□□ 0.55
PACS1-213ENST00000533756 CADPSQ9ULU8 1353 aa18.47■□□□□ 0.55
PACS1-213ENST00000533756 PEG3Q9GZU2 1588 aa18.45■□□□□ 0.54
PACS1-213ENST00000533756 ARHGEF11O15085 1522 aa18.44■□□□□ 0.54
PACS1-213ENST00000533756 PHF23Q9BUL5 403 aaPredicted RBP18.42■□□□□ 0.54
PACS1-213ENST00000533756 CYB5RLQ6IPT4 315 aa18.4■□□□□ 0.54
PACS1-213ENST00000533756 CEP164Q9UPV0 1460 aa18.33■□□□□ 0.53
PACS1-213ENST00000533756 FANCD2Q9BXW9 1451 aa18.23■□□□□ 0.51
PACS1-213ENST00000533756 ARAP1Q96P48 1450 aa18.18■□□□□ 0.5
PACS1-213ENST00000533756 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
PACS1-213ENST00000533756 URB2Q14146 1524 aaKnown RBP18.12■□□□□ 0.49
PACS1-213ENST00000533756 RSF1Q96T23 1441 aaPredicted RBP18.07■□□□□ 0.48
PACS1-213ENST00000533756 ILDR1Q86SU0 546 aaPredicted RBP18.05■□□□□ 0.48
PACS1-213ENST00000533756 CFTRP13569 1480 aa18.05■□□□□ 0.48
PACS1-213ENST00000533756 ZNF608Q9ULD9 1512 aaPredicted RBP18.04■□□□□ 0.48
PACS1-213ENST00000533756 IFT140Q96RY7 1462 aa18.03■□□□□ 0.48
PACS1-213ENST00000533756 CHD1O14646 1710 aa17.89■□□□□ 0.46
PACS1-213ENST00000533756 EIF4G3O43432 1585 aaKnown RBP17.87■□□□□ 0.45
PACS1-213ENST00000533756 FBLN2P98095 1184 aa17.87■□□□□ 0.45
PACS1-213ENST00000533756 WIZO95785 1651 aa17.83■□□□□ 0.44
PACS1-213ENST00000533756 AQRO60306 1485 aaKnown RBP eCLIP17.78■□□□□ 0.44
PACS1-213ENST00000533756 TOPBP1Q92547 1522 aa17.77■□□□□ 0.43
PACS1-213ENST00000533756 ABCC8Q09428 1581 aa17.74■□□□□ 0.43
PACS1-213ENST00000533756 CLASP1Q7Z460 1538 aa17.73■□□□□ 0.43
PACS1-213ENST00000533756 PRDM2Q13029 1718 aa17.67■□□□□ 0.42
PACS1-213ENST00000533756 TARBP1Q13395 1621 aaKnown RBP17.67■□□□□ 0.42
PACS1-213ENST00000533756 GAPVD1Q14C86 1478 aa17.65■□□□□ 0.42
PACS1-213ENST00000533756 SYNJ1O43426 1573 aa17.65■□□□□ 0.42
PACS1-213ENST00000533756 CHMP7Q8WUX9 453 aaPredicted RBP17.62■□□□□ 0.41
PACS1-213ENST00000533756 DNMBPQ6XZF7 1577 aa17.61■□□□□ 0.41
PACS1-213ENST00000533756 KDM4FA0A1W2PPD8 638 aa17.6■□□□□ 0.41
PACS1-213ENST00000533756 TOP2AP11388 1531 aaKnown RBP17.58■□□□□ 0.41
PACS1-213ENST00000533756 SNAPC4Q5SXM2 1469 aa17.55■□□□□ 0.4
PACS1-213ENST00000533756 TDRD9Q8NDG6 1382 aaKnown RBP17.53■□□□□ 0.4
PACS1-213ENST00000533756 POLA1P09884 1462 aaPredicted RBP17.52■□□□□ 0.4
PACS1-213ENST00000533756 MAGI1Q96QZ7 1491 aaPredicted RBP17.51■□□□□ 0.39
PACS1-213ENST00000533756 WDR97A6NE52 1622 aa17.47■□□□□ 0.39
PACS1-213ENST00000533756 SYNJ2O15056 1496 aa17.46■□□□□ 0.39
PACS1-213ENST00000533756 RAD54L2Q9Y4B4 1467 aa17.46■□□□□ 0.39
PACS1-213ENST00000533756 SOGA1O94964 1423 aa17.46■□□□□ 0.39
PACS1-213ENST00000533756 KIF13AQ9H1H9 1805 aa17.44■□□□□ 0.38
PACS1-213ENST00000533756 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
PACS1-213ENST00000533756 GRIN2BQ13224 1484 aa17.41■□□□□ 0.38
PACS1-213ENST00000533756 FAM69CQ0P6D2 419 aa17.34■□□□□ 0.37
PACS1-213ENST00000533756 FOXD1Q16676 465 aa17.34■□□□□ 0.37
PACS1-213ENST00000533756 ERCC6L2Q5T890 1561 aa17.34■□□□□ 0.37
PACS1-213ENST00000533756 FBXO41Q8TF61 875 aa17.32■□□□□ 0.36
PACS1-213ENST00000533756 ABCC10Q5T3U5 1492 aa17.31■□□□□ 0.36
PACS1-213ENST00000533756 KDM6BO15054 1643 aa17.29■□□□□ 0.36
PACS1-213ENST00000533756 FGD5Q6ZNL6 1462 aa17.26■□□□□ 0.35
PACS1-213ENST00000533756 CEP170Q5SW79 1584 aa17.25■□□□□ 0.35
PACS1-213ENST00000533756 HECW2Q9P2P5 1572 aa17.23■□□□□ 0.35
PACS1-213ENST00000533756 NPM1P06748 294 aaKnown RBP eCLIP17.2■□□□□ 0.34
PACS1-213ENST00000533756 PBRM1Q86U86 1689 aa17.18■□□□□ 0.34
PACS1-213ENST00000533756 DIP2BQ9P265 1576 aa17.18■□□□□ 0.34
PACS1-213ENST00000533756 ADGRL1O94910 1474 aa17.18■□□□□ 0.34
PACS1-213ENST00000533756 MAPKBP1O60336 1514 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms