RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 NISCHQ9Y2I1 1504 aa28.69■■■□□ 2.18
TRAPPC4-213ENST00000533149 ABCC9O60706 1549 aa26.62■■□□□ 1.85
TRAPPC4-213ENST00000533149 CCDC180Q9P1Z9 1646 aa26.01■■□□□ 1.75
TRAPPC4-213ENST00000533149 DNAJC5BQ9UF47 199 aa25.54■■□□□ 1.68
TRAPPC4-213ENST00000533149 RB1CC1Q8TDY2 1594 aa25.1■■□□□ 1.61
TRAPPC4-213ENST00000533149 NACADO15069 1562 aa24.79■■□□□ 1.56
TRAPPC4-213ENST00000533149 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.54
TRAPPC4-213ENST00000533149 DCAF8L2P0C7V8 631 aa24.53■■□□□ 1.52
TRAPPC4-213ENST00000533149 UNC13AQ9UPW8 1703 aa24.42■■□□□ 1.5
TRAPPC4-213ENST00000533149 BICRAQ9NZM4 1560 aa24.33■■□□□ 1.48
TRAPPC4-213ENST00000533149 MYO15BQ96JP2 1530 aa24.25■■□□□ 1.47
TRAPPC4-213ENST00000533149 CECR2Q9BXF3 1484 aa24.08■■□□□ 1.45
TRAPPC4-213ENST00000533149 SHROOM4Q9ULL8 1493 aa24.04■■□□□ 1.44
TRAPPC4-213ENST00000533149 CC2D2AQ9P2K1 1620 aa24.02■■□□□ 1.44
TRAPPC4-213ENST00000533149 DNAJC5Q9H3Z4 198 aa23.99■■□□□ 1.43
TRAPPC4-213ENST00000533149 EIF4G1Q04637 1599 aaKnown RBP23.81■■□□□ 1.4
TRAPPC4-213ENST00000533149 DCAF1Q9Y4B6 1507 aa23.68■■□□□ 1.38
TRAPPC4-213ENST00000533149 SCRIBQ14160 1630 aa23.62■■□□□ 1.37
TRAPPC4-213ENST00000533149 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
TRAPPC4-213ENST00000533149 CUX2O14529 1486 aa23.27■■□□□ 1.31
TRAPPC4-213ENST00000533149 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
TRAPPC4-213ENST00000533149 NCAPD3P42695 1498 aa22.89■■□□□ 1.25
TRAPPC4-213ENST00000533149 ATAD2BQ9ULI0 1458 aa22.71■■□□□ 1.23
TRAPPC4-213ENST00000533149 NESP48681 1621 aa22.67■■□□□ 1.22
TRAPPC4-213ENST00000533149 TRIM41Q8WV44 630 aa22.64■■□□□ 1.22
TRAPPC4-213ENST00000533149 HMGXB3Q12766 1538 aa22.64■■□□□ 1.21
TRAPPC4-213ENST00000533149 SMARCA2P51531 1590 aa22.63■■□□□ 1.21
TRAPPC4-213ENST00000533149 THOC2Q8NI27 1593 aaKnown RBP22.56■■□□□ 1.2
TRAPPC4-213ENST00000533149 SMARCA4P51532 1647 aa22.49■■□□□ 1.19
TRAPPC4-213ENST00000533149 BAZ1BQ9UIG0 1483 aaKnown RBP22.46■■□□□ 1.19
TRAPPC4-213ENST00000533149 LAMC3Q9Y6N6 1575 aa22.46■■□□□ 1.19
TRAPPC4-213ENST00000533149 PDS5BQ9NTI5 1447 aa22.39■■□□□ 1.18
TRAPPC4-213ENST00000533149 KIF21AQ7Z4S6 1674 aa22.33■■□□□ 1.17
TRAPPC4-213ENST00000533149 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.16
TRAPPC4-213ENST00000533149 PEG3Q9GZU2 1588 aa22.3■■□□□ 1.16
TRAPPC4-213ENST00000533149 MRC2Q9UBG0 1479 aa22.2■■□□□ 1.14
TRAPPC4-213ENST00000533149 CADPSQ9ULU8 1353 aa22.16■■□□□ 1.14
TRAPPC4-213ENST00000533149 WDR62O43379 1518 aa22.15■■□□□ 1.14
TRAPPC4-213ENST00000533149 OSCARQ8IYS5 282 aa22.13■■□□□ 1.13
TRAPPC4-213ENST00000533149 AEBP2Q6ZN18 517 aaPredicted RBP22.07■■□□□ 1.12
TRAPPC4-213ENST00000533149 MROH2BQ7Z745 1585 aa22.07■■□□□ 1.12
TRAPPC4-213ENST00000533149 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
TRAPPC4-213ENST00000533149 FANCD2Q9BXW9 1451 aa21.89■■□□□ 1.1
TRAPPC4-213ENST00000533149 RIMBP3CA6NJZ7 1639 aa21.81■■□□□ 1.08
TRAPPC4-213ENST00000533149 RIMBP3BA6NNM3 1639 aa21.81■■□□□ 1.08
TRAPPC4-213ENST00000533149 RIMBP3Q9UFD9 1639 aa21.81■■□□□ 1.08
TRAPPC4-213ENST00000533149 CFTRP13569 1480 aa21.77■■□□□ 1.08
TRAPPC4-213ENST00000533149 WIZO95785 1651 aa21.75■■□□□ 1.07
TRAPPC4-213ENST00000533149 URB2Q14146 1524 aaKnown RBP21.72■■□□□ 1.07
TRAPPC4-213ENST00000533149 ARHGEF11O15085 1522 aa21.7■■□□□ 1.06
TRAPPC4-213ENST00000533149 CYB5RLQ6IPT4 315 aa21.62■■□□□ 1.05
TRAPPC4-213ENST00000533149 TRHP20396 242 aaPredicted RBP21.6■■□□□ 1.05
TRAPPC4-213ENST00000533149 IFT140Q96RY7 1462 aa21.58■■□□□ 1.05
TRAPPC4-213ENST00000533149 ZNF608Q9ULD9 1512 aaPredicted RBP21.55■■□□□ 1.04
TRAPPC4-213ENST00000533149 TOP2AP11388 1531 aaKnown RBP21.47■■□□□ 1.03
TRAPPC4-213ENST00000533149 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
TRAPPC4-213ENST00000533149 ARAP1Q96P48 1450 aa21.43■■□□□ 1.02
TRAPPC4-213ENST00000533149 RSF1Q96T23 1441 aaPredicted RBP21.4■■□□□ 1.02
TRAPPC4-213ENST00000533149 EIF4G3O43432 1585 aaKnown RBP21.4■■□□□ 1.02
TRAPPC4-213ENST00000533149 TOPBP1Q92547 1522 aa21.39■■□□□ 1.02
TRAPPC4-213ENST00000533149 ABCC8Q09428 1581 aa21.38■■□□□ 1.01
TRAPPC4-213ENST00000533149 CHD1O14646 1710 aa21.34■■□□□ 1.01
TRAPPC4-213ENST00000533149 FBLN2P98095 1184 aa21.33■■□□□ 1.01
TRAPPC4-213ENST00000533149 AQRO60306 1485 aaKnown RBP eCLIP21.3■■□□□ 11e-6■■□□□ 13.1
TRAPPC4-213ENST00000533149 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
TRAPPC4-213ENST00000533149 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
TRAPPC4-213ENST00000533149 TARBP1Q13395 1621 aaKnown RBP21.23■□□□□ 0.99
TRAPPC4-213ENST00000533149 POLA1P09884 1462 aaPredicted RBP21.13■□□□□ 0.97
TRAPPC4-213ENST00000533149 CLASP1Q7Z460 1538 aa21.11■□□□□ 0.97
TRAPPC4-213ENST00000533149 CHMP7Q8WUX9 453 aaPredicted RBP21.09■□□□□ 0.97
TRAPPC4-213ENST00000533149 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.97
TRAPPC4-213ENST00000533149 SYNJ1O43426 1573 aa21.08■□□□□ 0.96
TRAPPC4-213ENST00000533149 SNAPC4Q5SXM2 1469 aa21.06■□□□□ 0.96
TRAPPC4-213ENST00000533149 SOGA1O94964 1423 aa21.06■□□□□ 0.96
TRAPPC4-213ENST00000533149 RAD54L2Q9Y4B4 1467 aa21.05■□□□□ 0.96
TRAPPC4-213ENST00000533149 WDR97A6NE52 1622 aa21.03■□□□□ 0.96
TRAPPC4-213ENST00000533149 MAGI1Q96QZ7 1491 aaPredicted RBP21.02■□□□□ 0.96
TRAPPC4-213ENST00000533149 GAPVD1Q14C86 1478 aa20.97■□□□□ 0.95
TRAPPC4-213ENST00000533149 SYNJ2O15056 1496 aa20.95■□□□□ 0.94
TRAPPC4-213ENST00000533149 GRIN2BQ13224 1484 aa20.94■□□□□ 0.94
TRAPPC4-213ENST00000533149 FGD5Q6ZNL6 1462 aa20.91■□□□□ 0.94
TRAPPC4-213ENST00000533149 CHIC1Q5VXU3 224 aa20.85■□□□□ 0.93
TRAPPC4-213ENST00000533149 CUX1P39880 1505 aa20.77■□□□□ 0.92
TRAPPC4-213ENST00000533149 PBRM1Q86U86 1689 aa20.75■□□□□ 0.91
TRAPPC4-213ENST00000533149 ERCC6L2Q5T890 1561 aa20.7■□□□□ 0.9
TRAPPC4-213ENST00000533149 GRIN2AQ12879 1464 aa20.66■□□□□ 0.9
TRAPPC4-213ENST00000533149 ABCA10Q8WWZ4 1543 aa20.65■□□□□ 0.9
TRAPPC4-213ENST00000533149 CEP170Q5SW79 1584 aa20.65■□□□□ 0.9
TRAPPC4-213ENST00000533149 ABCA5Q8WWZ7 1642 aa20.64■□□□□ 0.89
TRAPPC4-213ENST00000533149 NUP160Q12769 1436 aa20.62■□□□□ 0.89
TRAPPC4-213ENST00000533149 KIF13AQ9H1H9 1805 aa20.62■□□□□ 0.89
TRAPPC4-213ENST00000533149 SHROOM2Q13796 1616 aa20.57■□□□□ 0.88
TRAPPC4-213ENST00000533149 ILDR1Q86SU0 546 aaPredicted RBP20.55■□□□□ 0.88
TRAPPC4-213ENST00000533149 FAM69CQ0P6D2 419 aa20.54■□□□□ 0.88
TRAPPC4-213ENST00000533149 ADAMTS12P58397 1594 aa20.53■□□□□ 0.88
TRAPPC4-213ENST00000533149 FHAD1B1AJZ9 1412 aa20.51■□□□□ 0.87
TRAPPC4-213ENST00000533149 KDM4FA0A1W2PPD8 638 aa20.51■□□□□ 0.87
TRAPPC4-213ENST00000533149 NPM1P06748 294 aaKnown RBP eCLIP20.51■□□□□ 0.87
TRAPPC4-213ENST00000533149 ABCC10Q5T3U5 1492 aa20.5■□□□□ 0.87
TRAPPC4-213ENST00000533149 WRNQ14191 1432 aaPredicted RBP eCLIP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms