RNA–Protein interactions for RNA: ENST00000533145.5

HIF3A-215, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-215ENST00000533145 NISCHQ9Y2I1 1504 aa33.09■■■□□ 2.89
HIF3A-215ENST00000533145 CCDC180Q9P1Z9 1646 aa29.16■■■□□ 2.26
HIF3A-215ENST00000533145 ABCC9O60706 1549 aa27.81■■■□□ 2.04
HIF3A-215ENST00000533145 ZCCHC6Q5VYS8 1495 aaKnown RBP27.69■■■□□ 2.02
HIF3A-215ENST00000533145 DCAF1Q9Y4B6 1507 aa27.46■■□□□ 1.99
HIF3A-215ENST00000533145 MYO15BQ96JP2 1530 aa27.35■■□□□ 1.97
HIF3A-215ENST00000533145 DCAF8L2P0C7V8 631 aa27.29■■□□□ 1.96
HIF3A-215ENST00000533145 NACADO15069 1562 aa27.26■■□□□ 1.95
HIF3A-215ENST00000533145 RB1CC1Q8TDY2 1594 aa27.1■■□□□ 1.93
HIF3A-215ENST00000533145 SCRIBQ14160 1630 aa26.57■■□□□ 1.84
HIF3A-215ENST00000533145 UNC13AQ9UPW8 1703 aa26.53■■□□□ 1.84
HIF3A-215ENST00000533145 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
HIF3A-215ENST00000533145 BICRAQ9NZM4 1560 aa26.28■■□□□ 1.8
HIF3A-215ENST00000533145 PABPN1Q86U42 306 aaKnown RBP eCLIP26.09■■□□□ 1.77
HIF3A-215ENST00000533145 DNAJC5BQ9UF47 199 aa26.07■■□□□ 1.76
HIF3A-215ENST00000533145 CECR2Q9BXF3 1484 aa25.67■■□□□ 1.7
HIF3A-215ENST00000533145 BAZ1AQ9NRL2 1556 aaPredicted RBP25.6■■□□□ 1.69
HIF3A-215ENST00000533145 SMARCA4P51532 1647 aa25.53■■□□□ 1.68
HIF3A-215ENST00000533145 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
HIF3A-215ENST00000533145 MROH2BQ7Z745 1585 aa25.49■■□□□ 1.67
HIF3A-215ENST00000533145 RSF1Q96T23 1441 aaPredicted RBP25.45■■□□□ 1.66
HIF3A-215ENST00000533145 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
HIF3A-215ENST00000533145 WIZO95785 1651 aa25.26■■□□□ 1.63
HIF3A-215ENST00000533145 CC2D2AQ9P2K1 1620 aa25.23■■□□□ 1.63
HIF3A-215ENST00000533145 SMARCA2P51531 1590 aa25.23■■□□□ 1.63
HIF3A-215ENST00000533145 ATAD2BQ9ULI0 1458 aa25.22■■□□□ 1.63
HIF3A-215ENST00000533145 SUPT5HO00267 1087 aaKnown RBP25.21■■□□□ 1.63
HIF3A-215ENST00000533145 NCAPD3P42695 1498 aa25.15■■□□□ 1.62
HIF3A-215ENST00000533145 HMGXB3Q12766 1538 aa25.07■■□□□ 1.6
HIF3A-215ENST00000533145 BAZ1BQ9UIG0 1483 aaKnown RBP25.02■■□□□ 1.6
HIF3A-215ENST00000533145 TOP2AP11388 1531 aaKnown RBP25.02■■□□□ 1.6
HIF3A-215ENST00000533145 CCDC88BA6NC98 1476 aa24.73■■□□□ 1.55
HIF3A-215ENST00000533145 CFTRP13569 1480 aa24.43■■□□□ 1.5
HIF3A-215ENST00000533145 CADPSQ9ULU8 1353 aa24.42■■□□□ 1.5
HIF3A-215ENST00000533145 LAMC3Q9Y6N6 1575 aa24.37■■□□□ 1.49
HIF3A-215ENST00000533145 PRDM2Q13029 1718 aa24.33■■□□□ 1.49
HIF3A-215ENST00000533145 NESP48681 1621 aa24.28■■□□□ 1.48
HIF3A-215ENST00000533145 DNAJC5Q9H3Z4 198 aa24.26■■□□□ 1.47
HIF3A-215ENST00000533145 PDS5BQ9NTI5 1447 aa24.16■■□□□ 1.46
HIF3A-215ENST00000533145 FANCD2Q9BXW9 1451 aa24.12■■□□□ 1.45
HIF3A-215ENST00000533145 KIF21AQ7Z4S6 1674 aa24.04■■□□□ 1.44
HIF3A-215ENST00000533145 CEP164Q9UPV0 1460 aa24.02■■□□□ 1.44
HIF3A-215ENST00000533145 CHIC1Q5VXU3 224 aa23.99■■□□□ 1.43
HIF3A-215ENST00000533145 ABCC8Q09428 1581 aa23.98■■□□□ 1.43
HIF3A-215ENST00000533145 WRNQ14191 1432 aaPredicted RBP eCLIP23.95■■□□□ 1.42
HIF3A-215ENST00000533145 ERCC6Q03468 1493 aa23.91■■□□□ 1.42
HIF3A-215ENST00000533145 BIVM-ERCC5R4GMW8 1640 aa23.88■■□□□ 1.41
HIF3A-215ENST00000533145 CUX1P39880 1505 aa23.87■■□□□ 1.41
HIF3A-215ENST00000533145 TOP2BQ02880 1626 aa23.87■■□□□ 1.41
HIF3A-215ENST00000533145 SYNJ1O43426 1573 aa23.86■■□□□ 1.41
HIF3A-215ENST00000533145 MRC2Q9UBG0 1479 aa23.85■■□□□ 1.41
HIF3A-215ENST00000533145 DNMBPQ6XZF7 1577 aa23.85■■□□□ 1.41
HIF3A-215ENST00000533145 URB2Q14146 1524 aaKnown RBP23.84■■□□□ 1.41
HIF3A-215ENST00000533145 TRIM41Q8WV44 630 aa23.82■■□□□ 1.4
HIF3A-215ENST00000533145 TOPBP1Q92547 1522 aa23.81■■□□□ 1.4
HIF3A-215ENST00000533145 THOC2Q8NI27 1593 aaKnown RBP23.79■■□□□ 1.4
HIF3A-215ENST00000533145 WDR62O43379 1518 aa23.77■■□□□ 1.4
HIF3A-215ENST00000533145 FGD5Q6ZNL6 1462 aa23.68■■□□□ 1.38
HIF3A-215ENST00000533145 POLA1P09884 1462 aaPredicted RBP23.65■■□□□ 1.38
HIF3A-215ENST00000533145 SOGA1O94964 1423 aa23.58■■□□□ 1.36
HIF3A-215ENST00000533145 CUX2O14529 1486 aa23.56■■□□□ 1.36
HIF3A-215ENST00000533145 TARBP1Q13395 1621 aaKnown RBP23.53■■□□□ 1.36
HIF3A-215ENST00000533145 RAD54L2Q9Y4B4 1467 aa23.52■■□□□ 1.36
HIF3A-215ENST00000533145 ABCA10Q8WWZ4 1543 aa23.52■■□□□ 1.36
HIF3A-215ENST00000533145 IFT140Q96RY7 1462 aa23.5■■□□□ 1.35
HIF3A-215ENST00000533145 WDR97A6NE52 1622 aa23.5■■□□□ 1.35
HIF3A-215ENST00000533145 EEA1Q15075 1411 aa23.43■■□□□ 1.34
HIF3A-215ENST00000533145 KIF27Q86VH2 1401 aa23.41■■□□□ 1.34
HIF3A-215ENST00000533145 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
HIF3A-215ENST00000533145 ABCA5Q8WWZ7 1642 aa23.36■■□□□ 1.33
HIF3A-215ENST00000533145 TDRD9Q8NDG6 1382 aaKnown RBP23.33■■□□□ 1.33
HIF3A-215ENST00000533145 GAPVD1Q14C86 1478 aa23.31■■□□□ 1.32
HIF3A-215ENST00000533145 ZNF608Q9ULD9 1512 aaPredicted RBP23.31■■□□□ 1.32
HIF3A-215ENST00000533145 CSRNP3Q8WYN3 585 aa23.28■■□□□ 1.32
HIF3A-215ENST00000533145 AQRO60306 1485 aaKnown RBP eCLIP23.27■■□□□ 1.32
HIF3A-215ENST00000533145 IGF1RP08069 1367 aa23.27■■□□□ 1.31
HIF3A-215ENST00000533145 EIF4G3O43432 1585 aaKnown RBP23.26■■□□□ 1.31
HIF3A-215ENST00000533145 ERICH3Q5RHP9 1530 aa23.25■■□□□ 1.31
HIF3A-215ENST00000533145 FAM9AQ8IZU1 332 aaPredicted RBP23.25■■□□□ 1.31
HIF3A-215ENST00000533145 PBRM1Q86U86 1689 aa23.23■■□□□ 1.31
HIF3A-215ENST00000533145 GRIN2BQ13224 1484 aa23.22■■□□□ 1.31
HIF3A-215ENST00000533145 CUL7Q14999 1698 aa23.16■■□□□ 1.3
HIF3A-215ENST00000533145 PRXQ9BXM0 1461 aa23.15■■□□□ 1.3
HIF3A-215ENST00000533145 CARMIL1Q5VZK9 1371 aa23.13■■□□□ 1.29
HIF3A-215ENST00000533145 KIF21BO75037 1637 aa23.12■■□□□ 1.29
HIF3A-215ENST00000533145 MAGI1Q96QZ7 1491 aaPredicted RBP23.1■■□□□ 1.29
HIF3A-215ENST00000533145 FHAD1B1AJZ9 1412 aa23.08■■□□□ 1.28
HIF3A-215ENST00000533145 SNAPC4Q5SXM2 1469 aa23.06■■□□□ 1.28
HIF3A-215ENST00000533145 ADAMTS12P58397 1594 aa23.06■■□□□ 1.28
HIF3A-215ENST00000533145 RAPGEF2Q9Y4G8 1499 aa23.05■■□□□ 1.28
HIF3A-215ENST00000533145 GOLGA3Q08378 1498 aa23.01■■□□□ 1.27
HIF3A-215ENST00000533145 SYNJ2O15056 1496 aa22.98■■□□□ 1.27
HIF3A-215ENST00000533145 LOC105371045A0A1W2PR82 267 aa22.97■■□□□ 1.27
HIF3A-215ENST00000533145 GRIN2AQ12879 1464 aa22.92■■□□□ 1.26
HIF3A-215ENST00000533145 CHMP7Q8WUX9 453 aaPredicted RBP22.91■■□□□ 1.26
HIF3A-215ENST00000533145 TNIKQ9UKE5 1360 aa22.88■■□□□ 1.25
HIF3A-215ENST00000533145 CHD1O14646 1710 aa22.87■■□□□ 1.25
HIF3A-215ENST00000533145 UBTFP17480 764 aaKnown RBP22.86■■□□□ 1.25
HIF3A-215ENST00000533145 EHMT2Q96KQ7 1210 aa22.84■■□□□ 1.25
HIF3A-215ENST00000533145 CTTNBP2Q8WZ74 1663 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms