RNA–Protein interactions for RNA: ENST00000533011.5

CHMP4A-206, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 733 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-206ENST00000533011 NISCHQ9Y2I1 1504 aa25.14■■□□□ 1.62
CHMP4A-206ENST00000533011 ABCC9O60706 1549 aa23.49■■□□□ 1.35
CHMP4A-206ENST00000533011 CCDC180Q9P1Z9 1646 aa22.85■■□□□ 1.25
CHMP4A-206ENST00000533011 DNAJC5BQ9UF47 199 aa22.68■■□□□ 1.22
CHMP4A-206ENST00000533011 RB1CC1Q8TDY2 1594 aa22.14■■□□□ 1.13
CHMP4A-206ENST00000533011 NACADO15069 1562 aa21.84■■□□□ 1.09
CHMP4A-206ENST00000533011 PABPN1Q86U42 306 aaKnown RBP eCLIP21.78■■□□□ 1.08
CHMP4A-206ENST00000533011 DCAF8L2P0C7V8 631 aa21.56■■□□□ 1.04
CHMP4A-206ENST00000533011 DNAJC5Q9H3Z4 198 aa21.49■■□□□ 1.03
CHMP4A-206ENST00000533011 UNC13AQ9UPW8 1703 aa21.43■■□□□ 1.02
CHMP4A-206ENST00000533011 BICRAQ9NZM4 1560 aa21.4■■□□□ 1.02
CHMP4A-206ENST00000533011 MYO15BQ96JP2 1530 aa21.38■■□□□ 1.01
CHMP4A-206ENST00000533011 CECR2Q9BXF3 1484 aa21.3■■□□□ 1
CHMP4A-206ENST00000533011 SHROOM4Q9ULL8 1493 aa21.26■□□□□ 0.99
CHMP4A-206ENST00000533011 CC2D2AQ9P2K1 1620 aa21.18■□□□□ 0.98
CHMP4A-206ENST00000533011 EIF4G1Q04637 1599 aaKnown RBP20.98■□□□□ 0.95
CHMP4A-206ENST00000533011 DCAF1Q9Y4B6 1507 aa20.8■□□□□ 0.92
CHMP4A-206ENST00000533011 SCRIBQ14160 1630 aa20.67■□□□□ 0.9
CHMP4A-206ENST00000533011 CUX2O14529 1486 aa20.66■□□□□ 0.9
CHMP4A-206ENST00000533011 ZCCHC6Q5VYS8 1495 aaKnown RBP20.65■□□□□ 0.9
CHMP4A-206ENST00000533011 ERCC6Q03468 1493 aa20.4■□□□□ 0.86
CHMP4A-206ENST00000533011 NCAPD3P42695 1498 aa20.2■□□□□ 0.82
CHMP4A-206ENST00000533011 TRIM41Q8WV44 630 aa20.14■□□□□ 0.81
CHMP4A-206ENST00000533011 ATAD2BQ9ULI0 1458 aa19.97■□□□□ 0.79
CHMP4A-206ENST00000533011 NESP48681 1621 aa19.93■□□□□ 0.78
CHMP4A-206ENST00000533011 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
CHMP4A-206ENST00000533011 SMARCA2P51531 1590 aa19.91■□□□□ 0.78
CHMP4A-206ENST00000533011 THOC2Q8NI27 1593 aaKnown RBP19.87■□□□□ 0.77
CHMP4A-206ENST00000533011 LAMC3Q9Y6N6 1575 aa19.81■□□□□ 0.76
CHMP4A-206ENST00000533011 PDS5BQ9NTI5 1447 aa19.79■□□□□ 0.76
CHMP4A-206ENST00000533011 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
CHMP4A-206ENST00000533011 SMARCA4P51532 1647 aa19.7■□□□□ 0.74
CHMP4A-206ENST00000533011 OSCARQ8IYS5 282 aa19.67■□□□□ 0.74
CHMP4A-206ENST00000533011 KIF21AQ7Z4S6 1674 aa19.61■□□□□ 0.73
CHMP4A-206ENST00000533011 PEG3Q9GZU2 1588 aa19.6■□□□□ 0.73
CHMP4A-206ENST00000533011 BAZ1AQ9NRL2 1556 aaPredicted RBP19.59■□□□□ 0.73
CHMP4A-206ENST00000533011 MRC2Q9UBG0 1479 aa19.57■□□□□ 0.72
CHMP4A-206ENST00000533011 CADPSQ9ULU8 1353 aa19.55■□□□□ 0.72
CHMP4A-206ENST00000533011 WDR62O43379 1518 aa19.52■□□□□ 0.72
CHMP4A-206ENST00000533011 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
CHMP4A-206ENST00000533011 MROH2BQ7Z745 1585 aa19.29■□□□□ 0.68
CHMP4A-206ENST00000533011 RIMBP3CA6NJZ7 1639 aa19.29■□□□□ 0.68
CHMP4A-206ENST00000533011 RIMBP3BA6NNM3 1639 aa19.29■□□□□ 0.68
CHMP4A-206ENST00000533011 RIMBP3Q9UFD9 1639 aa19.29■□□□□ 0.68
CHMP4A-206ENST00000533011 FANCD2Q9BXW9 1451 aa19.26■□□□□ 0.67
CHMP4A-206ENST00000533011 AEBP2Q6ZN18 517 aaPredicted RBP19.23■□□□□ 0.67
CHMP4A-206ENST00000533011 TRHP20396 242 aaPredicted RBP19.2■□□□□ 0.66
CHMP4A-206ENST00000533011 ARHGEF11O15085 1522 aa19.2■□□□□ 0.66
CHMP4A-206ENST00000533011 CYB5RLQ6IPT4 315 aa19.18■□□□□ 0.66
CHMP4A-206ENST00000533011 CFTRP13569 1480 aa19.15■□□□□ 0.66
CHMP4A-206ENST00000533011 URB2Q14146 1524 aaKnown RBP19.09■□□□□ 0.65
CHMP4A-206ENST00000533011 IFT140Q96RY7 1462 aa19.03■□□□□ 0.64
CHMP4A-206ENST00000533011 WIZO95785 1651 aa18.98■□□□□ 0.63
CHMP4A-206ENST00000533011 ZNF608Q9ULD9 1512 aaPredicted RBP18.95■□□□□ 0.62
CHMP4A-206ENST00000533011 RSF1Q96T23 1441 aaPredicted RBP18.95■□□□□ 0.62
CHMP4A-206ENST00000533011 ARAP1Q96P48 1450 aa18.93■□□□□ 0.62
CHMP4A-206ENST00000533011 ABCC8Q09428 1581 aa18.86■□□□□ 0.61
CHMP4A-206ENST00000533011 FBLN2P98095 1184 aa18.82■□□□□ 0.6
CHMP4A-206ENST00000533011 TOPBP1Q92547 1522 aa18.79■□□□□ 0.6
CHMP4A-206ENST00000533011 EIF4G3O43432 1585 aaKnown RBP18.79■□□□□ 0.6
CHMP4A-206ENST00000533011 TOP2AP11388 1531 aaKnown RBP18.78■□□□□ 0.6
CHMP4A-206ENST00000533011 PRDM2Q13029 1718 aa18.77■□□□□ 0.59
CHMP4A-206ENST00000533011 CHD1O14646 1710 aa18.74■□□□□ 0.59
CHMP4A-206ENST00000533011 AQRO60306 1485 aaKnown RBP eCLIP18.74■□□□□ 0.59
CHMP4A-206ENST00000533011 DNMBPQ6XZF7 1577 aa18.66■□□□□ 0.58
CHMP4A-206ENST00000533011 TARBP1Q13395 1621 aaKnown RBP18.65■□□□□ 0.58
CHMP4A-206ENST00000533011 CHMP7Q8WUX9 453 aaPredicted RBP18.63■□□□□ 0.57
CHMP4A-206ENST00000533011 CLASP1Q7Z460 1538 aa18.6■□□□□ 0.57
CHMP4A-206ENST00000533011 SYNJ1O43426 1573 aa18.59■□□□□ 0.57
CHMP4A-206ENST00000533011 CCDC88BA6NC98 1476 aa18.58■□□□□ 0.57
CHMP4A-206ENST00000533011 POLA1P09884 1462 aaPredicted RBP18.55■□□□□ 0.56
CHMP4A-206ENST00000533011 TDRD9Q8NDG6 1382 aaKnown RBP18.54■□□□□ 0.56
CHMP4A-206ENST00000533011 WDR97A6NE52 1622 aa18.53■□□□□ 0.56
CHMP4A-206ENST00000533011 SOGA1O94964 1423 aa18.53■□□□□ 0.56
CHMP4A-206ENST00000533011 GAPVD1Q14C86 1478 aa18.52■□□□□ 0.55
CHMP4A-206ENST00000533011 MAGI1Q96QZ7 1491 aaPredicted RBP18.52■□□□□ 0.55
CHMP4A-206ENST00000533011 SNAPC4Q5SXM2 1469 aa18.5■□□□□ 0.55
CHMP4A-206ENST00000533011 SYNJ2O15056 1496 aa18.46■□□□□ 0.54
CHMP4A-206ENST00000533011 RAD54L2Q9Y4B4 1467 aa18.46■□□□□ 0.54
CHMP4A-206ENST00000533011 GRIN2BQ13224 1484 aa18.44■□□□□ 0.54
CHMP4A-206ENST00000533011 ILDR1Q86SU0 546 aaPredicted RBP18.4■□□□□ 0.54
CHMP4A-206ENST00000533011 FGD5Q6ZNL6 1462 aa18.32■□□□□ 0.52
CHMP4A-206ENST00000533011 SUPT5HO00267 1087 aaKnown RBP18.29■□□□□ 0.52
CHMP4A-206ENST00000533011 KDM4FA0A1W2PPD8 638 aa18.21■□□□□ 0.51
CHMP4A-206ENST00000533011 FAM69CQ0P6D2 419 aa18.19■□□□□ 0.5
CHMP4A-206ENST00000533011 NPM1P06748 294 aaKnown RBP eCLIP18.18■□□□□ 0.5
CHMP4A-206ENST00000533011 KIF13AQ9H1H9 1805 aa18.18■□□□□ 0.5
CHMP4A-206ENST00000533011 PBRM1Q86U86 1689 aa18.17■□□□□ 0.5
CHMP4A-206ENST00000533011 ERCC6L2Q5T890 1561 aa18.17■□□□□ 0.5
CHMP4A-206ENST00000533011 GRIN2AQ12879 1464 aa18.16■□□□□ 0.5
CHMP4A-206ENST00000533011 CUX1P39880 1505 aa18.16■□□□□ 0.5
CHMP4A-206ENST00000533011 CEP170Q5SW79 1584 aa18.16■□□□□ 0.5
CHMP4A-206ENST00000533011 NUP160Q12769 1436 aa18.15■□□□□ 0.5
CHMP4A-206ENST00000533011 ABCC10Q5T3U5 1492 aa18.14■□□□□ 0.49
CHMP4A-206ENST00000533011 ABCA10Q8WWZ4 1543 aa18.13■□□□□ 0.49
CHMP4A-206ENST00000533011 SHROOM2Q13796 1616 aa18.09■□□□□ 0.49
CHMP4A-206ENST00000533011 ABCA5Q8WWZ7 1642 aa18.09■□□□□ 0.49
CHMP4A-206ENST00000533011 MAPKBP1O60336 1514 aa18.04■□□□□ 0.48
CHMP4A-206ENST00000533011 JPH4Q96JJ6 628 aa18.04■□□□□ 0.48
CHMP4A-206ENST00000533011 KDM6BO15054 1643 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms