RNA–Protein interactions for RNA: ENST00000531495.1

SSH3-207, Transcript of slingshot protein phosphatase 3, humanhuman

TSL 2

Gene SSH3, Length 548 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH3-207ENST00000531495 NISCHQ9Y2I1 1504 aa33.25■■■□□ 2.91
SSH3-207ENST00000531495 ABCC9O60706 1549 aa30.26■■■□□ 2.43
SSH3-207ENST00000531495 CCDC180Q9P1Z9 1646 aa29.84■■■□□ 2.37
SSH3-207ENST00000531495 DNAJC5BQ9UF47 199 aa28.66■■■□□ 2.18
SSH3-207ENST00000531495 RB1CC1Q8TDY2 1594 aa28.66■■■□□ 2.18
SSH3-207ENST00000531495 DCAF8L2P0C7V8 631 aa28.47■■■□□ 2.15
SSH3-207ENST00000531495 NACADO15069 1562 aa28.41■■■□□ 2.14
SSH3-207ENST00000531495 PABPN1Q86U42 306 aaKnown RBP eCLIP28.23■■■□□ 2.11
SSH3-207ENST00000531495 MYO15BQ96JP2 1530 aa27.91■■■□□ 2.06
SSH3-207ENST00000531495 UNC13AQ9UPW8 1703 aa27.76■■■□□ 2.03
SSH3-207ENST00000531495 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
SSH3-207ENST00000531495 ZCCHC6Q5VYS8 1495 aaKnown RBP27.44■■□□□ 1.98
SSH3-207ENST00000531495 DCAF1Q9Y4B6 1507 aa27.43■■□□□ 1.98
SSH3-207ENST00000531495 SHROOM4Q9ULL8 1493 aa27.43■■□□□ 1.98
SSH3-207ENST00000531495 CECR2Q9BXF3 1484 aa27.32■■□□□ 1.96
SSH3-207ENST00000531495 CC2D2AQ9P2K1 1620 aa27.24■■□□□ 1.95
SSH3-207ENST00000531495 SCRIBQ14160 1630 aa27.21■■□□□ 1.95
SSH3-207ENST00000531495 EIF4G1Q04637 1599 aaKnown RBP27.13■■□□□ 1.93
SSH3-207ENST00000531495 DNAJC5Q9H3Z4 198 aa26.62■■□□□ 1.85
SSH3-207ENST00000531495 NCAPD3P42695 1498 aa26.27■■□□□ 1.8
SSH3-207ENST00000531495 ERCC6Q03468 1493 aa26.22■■□□□ 1.79
SSH3-207ENST00000531495 CUX2O14529 1486 aa26.21■■□□□ 1.79
SSH3-207ENST00000531495 ATAD2BQ9ULI0 1458 aa26.11■■□□□ 1.77
SSH3-207ENST00000531495 SMARCA2P51531 1590 aa26.03■■□□□ 1.76
SSH3-207ENST00000531495 HMGXB3Q12766 1538 aa25.95■■□□□ 1.74
SSH3-207ENST00000531495 SMARCA4P51532 1647 aa25.92■■□□□ 1.74
SSH3-207ENST00000531495 BAZ1BQ9UIG0 1483 aaKnown RBP25.86■■□□□ 1.73
SSH3-207ENST00000531495 NESP48681 1621 aa25.86■■□□□ 1.73
SSH3-207ENST00000531495 BAZ1AQ9NRL2 1556 aaPredicted RBP25.84■■□□□ 1.73
SSH3-207ENST00000531495 PEG3Q9GZU2 1588 aa25.68■■□□□ 1.7
SSH3-207ENST00000531495 LAMC3Q9Y6N6 1575 aa25.65■■□□□ 1.7
SSH3-207ENST00000531495 PDS5BQ9NTI5 1447 aa25.65■■□□□ 1.7
SSH3-207ENST00000531495 MROH2BQ7Z745 1585 aa25.58■■□□□ 1.69
SSH3-207ENST00000531495 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
SSH3-207ENST00000531495 CADPSQ9ULU8 1353 aa25.5■■□□□ 1.67
SSH3-207ENST00000531495 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
SSH3-207ENST00000531495 TRIM41Q8WV44 630 aa25.38■■□□□ 1.65
SSH3-207ENST00000531495 MRC2Q9UBG0 1479 aa25.35■■□□□ 1.65
SSH3-207ENST00000531495 WDR62O43379 1518 aa25.22■■□□□ 1.63
SSH3-207ENST00000531495 WIZO95785 1651 aa25.21■■□□□ 1.63
SSH3-207ENST00000531495 CEP164Q9UPV0 1460 aa25.21■■□□□ 1.63
SSH3-207ENST00000531495 FANCD2Q9BXW9 1451 aa25.15■■□□□ 1.62
SSH3-207ENST00000531495 OSCARQ8IYS5 282 aa25.14■■□□□ 1.62
SSH3-207ENST00000531495 CFTRP13569 1480 aa25.09■■□□□ 1.61
SSH3-207ENST00000531495 RSF1Q96T23 1441 aaPredicted RBP25.02■■□□□ 1.6
SSH3-207ENST00000531495 TOP2AP11388 1531 aaKnown RBP24.92■■□□□ 1.58
SSH3-207ENST00000531495 URB2Q14146 1524 aaKnown RBP24.9■■□□□ 1.58
SSH3-207ENST00000531495 IFT140Q96RY7 1462 aa24.74■■□□□ 1.55
SSH3-207ENST00000531495 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.55
SSH3-207ENST00000531495 ABCC8Q09428 1581 aa24.65■■□□□ 1.54
SSH3-207ENST00000531495 ZNF608Q9ULD9 1512 aaPredicted RBP24.65■■□□□ 1.54
SSH3-207ENST00000531495 TOPBP1Q92547 1522 aa24.61■■□□□ 1.53
SSH3-207ENST00000531495 PRDM2Q13029 1718 aa24.59■■□□□ 1.53
SSH3-207ENST00000531495 RIMBP3CA6NJZ7 1639 aa24.57■■□□□ 1.52
SSH3-207ENST00000531495 RIMBP3BA6NNM3 1639 aa24.57■■□□□ 1.52
SSH3-207ENST00000531495 RIMBP3Q9UFD9 1639 aa24.57■■□□□ 1.52
SSH3-207ENST00000531495 CYB5RLQ6IPT4 315 aa24.56■■□□□ 1.52
SSH3-207ENST00000531495 ARHGEF11O15085 1522 aa24.52■■□□□ 1.52
SSH3-207ENST00000531495 FBLN2P98095 1184 aa24.52■■□□□ 1.52
SSH3-207ENST00000531495 DNMBPQ6XZF7 1577 aa24.46■■□□□ 1.51
SSH3-207ENST00000531495 AQRO60306 1485 aaKnown RBP eCLIP24.46■■□□□ 1.51
SSH3-207ENST00000531495 EIF4G3O43432 1585 aaKnown RBP24.42■■□□□ 1.5
SSH3-207ENST00000531495 TRHP20396 242 aaPredicted RBP24.42■■□□□ 1.5
SSH3-207ENST00000531495 POLA1P09884 1462 aaPredicted RBP24.34■■□□□ 1.49
SSH3-207ENST00000531495 SOGA1O94964 1423 aa24.34■■□□□ 1.49
SSH3-207ENST00000531495 TARBP1Q13395 1621 aaKnown RBP24.33■■□□□ 1.49
SSH3-207ENST00000531495 TDRD9Q8NDG6 1382 aaKnown RBP24.31■■□□□ 1.48
SSH3-207ENST00000531495 CHMP7Q8WUX9 453 aaPredicted RBP24.29■■□□□ 1.48
SSH3-207ENST00000531495 RAD54L2Q9Y4B4 1467 aa24.27■■□□□ 1.48
SSH3-207ENST00000531495 CHD1O14646 1710 aa24.25■■□□□ 1.47
SSH3-207ENST00000531495 ARAP1Q96P48 1450 aa24.25■■□□□ 1.47
SSH3-207ENST00000531495 SNAPC4Q5SXM2 1469 aa24.16■■□□□ 1.46
SSH3-207ENST00000531495 FGD5Q6ZNL6 1462 aa24.15■■□□□ 1.46
SSH3-207ENST00000531495 WDR97A6NE52 1622 aa24.12■■□□□ 1.45
SSH3-207ENST00000531495 GRIN2BQ13224 1484 aa24.12■■□□□ 1.45
SSH3-207ENST00000531495 MAGI1Q96QZ7 1491 aaPredicted RBP24.11■■□□□ 1.45
SSH3-207ENST00000531495 SYNJ1O43426 1573 aa24.08■■□□□ 1.45
SSH3-207ENST00000531495 SYNJ2O15056 1496 aa24.04■■□□□ 1.44
SSH3-207ENST00000531495 CUX1P39880 1505 aa24.04■■□□□ 1.44
SSH3-207ENST00000531495 CLASP1Q7Z460 1538 aa24.03■■□□□ 1.44
SSH3-207ENST00000531495 GAPVD1Q14C86 1478 aa23.99■■□□□ 1.43
SSH3-207ENST00000531495 AEBP2Q6ZN18 517 aaPredicted RBP23.97■■□□□ 1.43
SSH3-207ENST00000531495 SUPT5HO00267 1087 aaKnown RBP23.88■■□□□ 1.41
SSH3-207ENST00000531495 ABCA10Q8WWZ4 1543 aa23.87■■□□□ 1.41
SSH3-207ENST00000531495 WRNQ14191 1432 aaPredicted RBP eCLIP23.83■■□□□ 1.4
SSH3-207ENST00000531495 PBRM1Q86U86 1689 aa23.79■■□□□ 1.4
SSH3-207ENST00000531495 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
SSH3-207ENST00000531495 ABCA5Q8WWZ7 1642 aa23.75■■□□□ 1.39
SSH3-207ENST00000531495 FHAD1B1AJZ9 1412 aa23.69■■□□□ 1.38
SSH3-207ENST00000531495 NUP160Q12769 1436 aa23.68■■□□□ 1.38
SSH3-207ENST00000531495 CEP170Q5SW79 1584 aa23.62■■□□□ 1.37
SSH3-207ENST00000531495 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
SSH3-207ENST00000531495 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
SSH3-207ENST00000531495 JPH4Q96JJ6 628 aa23.6■■□□□ 1.37
SSH3-207ENST00000531495 NPM1P06748 294 aaKnown RBP eCLIP23.58■■□□□ 1.37
SSH3-207ENST00000531495 TOP2BQ02880 1626 aa23.58■■□□□ 1.36
SSH3-207ENST00000531495 ERICH3Q5RHP9 1530 aa23.57■■□□□ 1.36
SSH3-207ENST00000531495 PRG4Q92954 1404 aaPredicted RBP23.56■■□□□ 1.36
SSH3-207ENST00000531495 BIVM-ERCC5R4GMW8 1640 aa23.52■■□□□ 1.36
SSH3-207ENST00000531495 SHROOM2Q13796 1616 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 192.1 ms