RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 AEBP2Q6ZN18 517 aaPredicted RBP22.78■■□□□ 1.24
CD44-232ENST00000531118 CHIC1Q5VXU3 224 aa22.37■■□□□ 1.17
CD44-232ENST00000531118 NISCHQ9Y2I1 1504 aa21.58■■□□□ 1.04
CD44-232ENST00000531118 ABCC9O60706 1549 aa20.09■□□□□ 0.81
CD44-232ENST00000531118 CCDC180Q9P1Z9 1646 aa19.73■□□□□ 0.75
CD44-232ENST00000531118 PHF23Q9BUL5 403 aaPredicted RBP19.6■□□□□ 0.73
CD44-232ENST00000531118 SENP3Q9H4L4 574 aaPredicted RBP19.43■□□□□ 0.7
CD44-232ENST00000531118 DNAJC5BQ9UF47 199 aa19.19■□□□□ 0.66
CD44-232ENST00000531118 RB1CC1Q8TDY2 1594 aa18.95■□□□□ 0.62
CD44-232ENST00000531118 NACADO15069 1562 aa18.67■□□□□ 0.58
CD44-232ENST00000531118 UNC13AQ9UPW8 1703 aa18.63■□□□□ 0.57
CD44-232ENST00000531118 PABPN1Q86U42 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
CD44-232ENST00000531118 BICRAQ9NZM4 1560 aa18.43■□□□□ 0.54
CD44-232ENST00000531118 MYO15BQ96JP2 1530 aa18.25■□□□□ 0.51
CD44-232ENST00000531118 PLPPR3Q6T4P5 718 aa18.21■□□□□ 0.51
CD44-232ENST00000531118 DCAF8L2P0C7V8 631 aa18.2■□□□□ 0.5
CD44-232ENST00000531118 CC2D2AQ9P2K1 1620 aa18.18■□□□□ 0.5
CD44-232ENST00000531118 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
CD44-232ENST00000531118 SHROOM4Q9ULL8 1493 aa18.16■□□□□ 0.5
CD44-232ENST00000531118 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.48
CD44-232ENST00000531118 DNAJC5Q9H3Z4 198 aa18■□□□□ 0.47
CD44-232ENST00000531118 FOXD1Q16676 465 aa17.95■□□□□ 0.46
CD44-232ENST00000531118 SCRIBQ14160 1630 aa17.89■□□□□ 0.45
CD44-232ENST00000531118 ZCCHC6Q5VYS8 1495 aaKnown RBP17.83■□□□□ 0.45
CD44-232ENST00000531118 DCAF1Q9Y4B6 1507 aa17.82■□□□□ 0.44
CD44-232ENST00000531118 CUX2O14529 1486 aa17.57■□□□□ 0.4
CD44-232ENST00000531118 ERCC6Q03468 1493 aa17.38■□□□□ 0.37
CD44-232ENST00000531118 ADRA2BP18089 450 aa17.25■□□□□ 0.35
CD44-232ENST00000531118 PPP6R1Q9UPN7 881 aa17.25■□□□□ 0.35
CD44-232ENST00000531118 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
CD44-232ENST00000531118 THOC2Q8NI27 1593 aaKnown RBP17.18■□□□□ 0.34
CD44-232ENST00000531118 HMGXB3Q12766 1538 aa17.12■□□□□ 0.33
CD44-232ENST00000531118 NESP48681 1621 aa17.12■□□□□ 0.33
CD44-232ENST00000531118 ATAD2BQ9ULI0 1458 aa17.08■□□□□ 0.32
CD44-232ENST00000531118 SMARCA2P51531 1590 aa17.04■□□□□ 0.32
CD44-232ENST00000531118 SMARCA4P51532 1647 aa17.01■□□□□ 0.31
CD44-232ENST00000531118 TRIM41Q8WV44 630 aa17■□□□□ 0.31
CD44-232ENST00000531118 KIF21AQ7Z4S6 1674 aa16.99■□□□□ 0.31
CD44-232ENST00000531118 PIAS4Q8N2W9 510 aaPredicted RBP16.97■□□□□ 0.31
CD44-232ENST00000531118 LAMC3Q9Y6N6 1575 aa16.96■□□□□ 0.31
CD44-232ENST00000531118 BAZ1BQ9UIG0 1483 aaKnown RBP16.91■□□□□ 0.3
CD44-232ENST00000531118 PEG3Q9GZU2 1588 aa16.85■□□□□ 0.29
CD44-232ENST00000531118 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
CD44-232ENST00000531118 PDS5BQ9NTI5 1447 aa16.79■□□□□ 0.28
CD44-232ENST00000531118 WDR62O43379 1518 aa16.77■□□□□ 0.28
CD44-232ENST00000531118 MRC2Q9UBG0 1479 aa16.75■□□□□ 0.27
CD44-232ENST00000531118 MSH5O43196 834 aa16.63■□□□□ 0.25
CD44-232ENST00000531118 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
CD44-232ENST00000531118 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
CD44-232ENST00000531118 CEP164Q9UPV0 1460 aa16.57■□□□□ 0.24
CD44-232ENST00000531118 RIMBP3CA6NJZ7 1639 aa16.56■□□□□ 0.24
CD44-232ENST00000531118 RIMBP3BA6NNM3 1639 aa16.56■□□□□ 0.24
CD44-232ENST00000531118 RIMBP3Q9UFD9 1639 aa16.56■□□□□ 0.24
CD44-232ENST00000531118 OSCARQ8IYS5 282 aa16.49■□□□□ 0.23
CD44-232ENST00000531118 FANCD2Q9BXW9 1451 aa16.48■□□□□ 0.23
CD44-232ENST00000531118 ARHGEF11O15085 1522 aa16.43■□□□□ 0.22
CD44-232ENST00000531118 WIZO95785 1651 aa16.43■□□□□ 0.22
CD44-232ENST00000531118 URB2Q14146 1524 aaKnown RBP16.4■□□□□ 0.22
CD44-232ENST00000531118 CFTRP13569 1480 aa16.35■□□□□ 0.21
CD44-232ENST00000531118 PRDM2Q13029 1718 aa16.35■□□□□ 0.21
CD44-232ENST00000531118 ZNF608Q9ULD9 1512 aaPredicted RBP16.27■□□□□ 0.2
CD44-232ENST00000531118 EIF4G3O43432 1585 aaKnown RBP16.26■□□□□ 0.19
CD44-232ENST00000531118 CHD1O14646 1710 aa16.25■□□□□ 0.19
CD44-232ENST00000531118 IFT140Q96RY7 1462 aa16.24■□□□□ 0.19
CD44-232ENST00000531118 ARAP1Q96P48 1450 aa16.23■□□□□ 0.19
CD44-232ENST00000531118 TOP2AP11388 1531 aaKnown RBP16.21■□□□□ 0.19
CD44-232ENST00000531118 CYB5RLQ6IPT4 315 aa16.14■□□□□ 0.17
CD44-232ENST00000531118 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
CD44-232ENST00000531118 TOPBP1Q92547 1522 aa16.13■□□□□ 0.17
CD44-232ENST00000531118 RSF1Q96T23 1441 aaPredicted RBP16.12■□□□□ 0.17
CD44-232ENST00000531118 DNMBPQ6XZF7 1577 aa16.07■□□□□ 0.16
CD44-232ENST00000531118 TARBP1Q13395 1621 aaKnown RBP16.07■□□□□ 0.16
CD44-232ENST00000531118 CLASP1Q7Z460 1538 aa16.01■□□□□ 0.15
CD44-232ENST00000531118 PPP4R3CPQ6ZMV5 832 aa16.01■□□□□ 0.15
CD44-232ENST00000531118 ABCC8Q09428 1581 aa16■□□□□ 0.15
CD44-232ENST00000531118 AQRO60306 1485 aaKnown RBP eCLIP15.99■□□□□ 0.15
CD44-232ENST00000531118 CCDC88BA6NC98 1476 aa15.93■□□□□ 0.14
CD44-232ENST00000531118 POLA1P09884 1462 aaPredicted RBP15.93■□□□□ 0.14
CD44-232ENST00000531118 SYNJ1O43426 1573 aa15.92■□□□□ 0.14
CD44-232ENST00000531118 SCAF1Q9H7N4 1312 aaKnown RBP15.92■□□□□ 0.14
CD44-232ENST00000531118 SNAPC4Q5SXM2 1469 aa15.91■□□□□ 0.14
CD44-232ENST00000531118 WDR97A6NE52 1622 aa15.9■□□□□ 0.14
CD44-232ENST00000531118 FBLN2P98095 1184 aa15.9■□□□□ 0.14
CD44-232ENST00000531118 RAD54L2Q9Y4B4 1467 aa15.84■□□□□ 0.13
CD44-232ENST00000531118 MAGI1Q96QZ7 1491 aaPredicted RBP15.83■□□□□ 0.12
CD44-232ENST00000531118 GAPVD1Q14C86 1478 aa15.8■□□□□ 0.12
CD44-232ENST00000531118 PBRM1Q86U86 1689 aa15.79■□□□□ 0.12
CD44-232ENST00000531118 TDRD9Q8NDG6 1382 aaKnown RBP15.78■□□□□ 0.12
CD44-232ENST00000531118 SYNJ2O15056 1496 aa15.77■□□□□ 0.11
CD44-232ENST00000531118 FGD5Q6ZNL6 1462 aa15.76■□□□□ 0.11
CD44-232ENST00000531118 SOGA1O94964 1423 aa15.75■□□□□ 0.11
CD44-232ENST00000531118 GRIN2BQ13224 1484 aa15.74■□□□□ 0.11
CD44-232ENST00000531118 KIF13AQ9H1H9 1805 aa15.71■□□□□ 0.11
CD44-232ENST00000531118 CHMP7Q8WUX9 453 aaPredicted RBP15.7■□□□□ 0.1
CD44-232ENST00000531118 ERCC6L2Q5T890 1561 aa15.69■□□□□ 0.1
CD44-232ENST00000531118 NCBP3Q53F19 620 aaKnown RBP15.67■□□□□ 0.1
CD44-232ENST00000531118 CUX1P39880 1505 aa15.67■□□□□ 0.1
CD44-232ENST00000531118 ABCA5Q8WWZ7 1642 aa15.65■□□□□ 0.1
CD44-232ENST00000531118 KCNA4P22459 653 aa15.64■□□□□ 0.09
CD44-232ENST00000531118 CEP170Q5SW79 1584 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms