RNA–Protein interactions for RNA: ENST00000530990.1

LTBP3-219, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 2

Gene LTBP3, Length 531 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-219ENST00000530990 NISCHQ9Y2I1 1504 aa28.91■■■□□ 2.22
LTBP3-219ENST00000530990 CCDC180Q9P1Z9 1646 aa25.76■■□□□ 1.71
LTBP3-219ENST00000530990 ABCC9O60706 1549 aa25.07■■□□□ 1.6
LTBP3-219ENST00000530990 RB1CC1Q8TDY2 1594 aa24.16■■□□□ 1.46
LTBP3-219ENST00000530990 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
LTBP3-219ENST00000530990 NACADO15069 1562 aa24.12■■□□□ 1.45
LTBP3-219ENST00000530990 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
LTBP3-219ENST00000530990 MYO15BQ96JP2 1530 aa24■■□□□ 1.43
LTBP3-219ENST00000530990 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
LTBP3-219ENST00000530990 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
LTBP3-219ENST00000530990 SCRIBQ14160 1630 aa23.51■■□□□ 1.35
LTBP3-219ENST00000530990 BICRAQ9NZM4 1560 aa23.45■■□□□ 1.34
LTBP3-219ENST00000530990 PABPN1Q86U42 306 aaKnown RBP eCLIP23.37■■□□□ 1.334e-14■■■□□ 16.3
LTBP3-219ENST00000530990 SHROOM4Q9ULL8 1493 aa23.17■■□□□ 1.3
LTBP3-219ENST00000530990 DNAJC5BQ9UF47 199 aa23.04■■□□□ 1.28
LTBP3-219ENST00000530990 EIF4G1Q04637 1599 aaKnown RBP22.82■■□□□ 1.24
LTBP3-219ENST00000530990 CC2D2AQ9P2K1 1620 aa22.71■■□□□ 1.23
LTBP3-219ENST00000530990 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
LTBP3-219ENST00000530990 SMARCA4P51532 1647 aa22.47■■□□□ 1.19
LTBP3-219ENST00000530990 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
LTBP3-219ENST00000530990 MROH2BQ7Z745 1585 aa22.3■■□□□ 1.16
LTBP3-219ENST00000530990 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
LTBP3-219ENST00000530990 SMARCA2P51531 1590 aa22.26■■□□□ 1.15
LTBP3-219ENST00000530990 PEG3Q9GZU2 1588 aa22.23■■□□□ 1.15
LTBP3-219ENST00000530990 NCAPD3P42695 1498 aa22.22■■□□□ 1.15
LTBP3-219ENST00000530990 HMGXB3Q12766 1538 aa22.19■■□□□ 1.14
LTBP3-219ENST00000530990 BAZ1BQ9UIG0 1483 aaKnown RBP22.11■■□□□ 1.13
LTBP3-219ENST00000530990 WIZO95785 1651 aa22.11■■□□□ 1.13
LTBP3-219ENST00000530990 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
LTBP3-219ENST00000530990 TOP2AP11388 1531 aaKnown RBP21.85■■□□□ 1.09
LTBP3-219ENST00000530990 NESP48681 1621 aa21.73■■□□□ 1.07
LTBP3-219ENST00000530990 LAMC3Q9Y6N6 1575 aa21.69■■□□□ 1.06
LTBP3-219ENST00000530990 ERCC6Q03468 1493 aa21.58■■□□□ 1.05
LTBP3-219ENST00000530990 CADPSQ9ULU8 1353 aa21.56■■□□□ 1.04
LTBP3-219ENST00000530990 KIF21AQ7Z4S6 1674 aa21.56■■□□□ 1.04
LTBP3-219ENST00000530990 CCDC88BA6NC98 1476 aa21.55■■□□□ 1.04
LTBP3-219ENST00000530990 CFTRP13569 1480 aa21.48■■□□□ 1.03
LTBP3-219ENST00000530990 PRDM2Q13029 1718 aa21.48■■□□□ 1.03
LTBP3-219ENST00000530990 SUPT5HO00267 1087 aaKnown RBP21.47■■□□□ 1.03
LTBP3-219ENST00000530990 PDS5BQ9NTI5 1447 aa21.46■■□□□ 1.03
LTBP3-219ENST00000530990 THOC2Q8NI27 1593 aaKnown RBP21.45■■□□□ 1.02
LTBP3-219ENST00000530990 FANCD2Q9BXW9 1451 aa21.36■■□□□ 1.01
LTBP3-219ENST00000530990 CEP164Q9UPV0 1460 aa21.34■■□□□ 1.01
LTBP3-219ENST00000530990 CUX2O14529 1486 aa21.33■■□□□ 1.01
LTBP3-219ENST00000530990 MRC2Q9UBG0 1479 aa21.3■■□□□ 1
LTBP3-219ENST00000530990 WDR62O43379 1518 aa21.25■□□□□ 0.99
LTBP3-219ENST00000530990 URB2Q14146 1524 aaKnown RBP21.17■□□□□ 0.98
LTBP3-219ENST00000530990 DNAJC5Q9H3Z4 198 aa21.13■□□□□ 0.97
LTBP3-219ENST00000530990 TOPBP1Q92547 1522 aa21.05■□□□□ 0.96
LTBP3-219ENST00000530990 DNMBPQ6XZF7 1577 aa21.05■□□□□ 0.96
LTBP3-219ENST00000530990 ABCC8Q09428 1581 aa20.99■□□□□ 0.95
LTBP3-219ENST00000530990 CUX1P39880 1505 aa20.93■□□□□ 0.94
LTBP3-219ENST00000530990 IFT140Q96RY7 1462 aa20.88■□□□□ 0.93
LTBP3-219ENST00000530990 POLA1P09884 1462 aaPredicted RBP20.87■□□□□ 0.93
LTBP3-219ENST00000530990 FGD5Q6ZNL6 1462 aa20.84■□□□□ 0.93
LTBP3-219ENST00000530990 TARBP1Q13395 1621 aaKnown RBP20.84■□□□□ 0.93
LTBP3-219ENST00000530990 BIVM-ERCC5R4GMW8 1640 aa20.81■□□□□ 0.92
LTBP3-219ENST00000530990 ZNF608Q9ULD9 1512 aaPredicted RBP20.8■□□□□ 0.92
LTBP3-219ENST00000530990 SYNJ1O43426 1573 aa20.8■□□□□ 0.92
LTBP3-219ENST00000530990 EIF4G3O43432 1585 aaKnown RBP20.78■□□□□ 0.92
LTBP3-219ENST00000530990 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
LTBP3-219ENST00000530990 RAD54L2Q9Y4B4 1467 aa20.77■□□□□ 0.92
LTBP3-219ENST00000530990 TOP2BQ02880 1626 aa20.77■□□□□ 0.92
LTBP3-219ENST00000530990 WDR97A6NE52 1622 aa20.75■□□□□ 0.91
LTBP3-219ENST00000530990 SOGA1O94964 1423 aa20.72■□□□□ 0.91
LTBP3-219ENST00000530990 AQRO60306 1485 aaKnown RBP eCLIP20.65■□□□□ 0.9
LTBP3-219ENST00000530990 ABCA10Q8WWZ4 1543 aa20.63■□□□□ 0.89
LTBP3-219ENST00000530990 TDRD9Q8NDG6 1382 aaKnown RBP20.61■□□□□ 0.89
LTBP3-219ENST00000530990 ABCA5Q8WWZ7 1642 aa20.6■□□□□ 0.89
LTBP3-219ENST00000530990 PBRM1Q86U86 1689 aa20.6■□□□□ 0.89
LTBP3-219ENST00000530990 CHD1O14646 1710 aa20.54■□□□□ 0.88
LTBP3-219ENST00000530990 GAPVD1Q14C86 1478 aa20.52■□□□□ 0.88
LTBP3-219ENST00000530990 GRIN2BQ13224 1484 aa20.5■□□□□ 0.87
LTBP3-219ENST00000530990 SNAPC4Q5SXM2 1469 aa20.5■□□□□ 0.87
LTBP3-219ENST00000530990 MAGI1Q96QZ7 1491 aaPredicted RBP20.46■□□□□ 0.87
LTBP3-219ENST00000530990 ADAMTS12P58397 1594 aa20.4■□□□□ 0.86
LTBP3-219ENST00000530990 ERICH3Q5RHP9 1530 aa20.38■□□□□ 0.85
LTBP3-219ENST00000530990 SYNJ2O15056 1496 aa20.37■□□□□ 0.85
LTBP3-219ENST00000530990 OSCARQ8IYS5 282 aa20.37■□□□□ 0.85
LTBP3-219ENST00000530990 FBLN2P98095 1184 aa20.34■□□□□ 0.85
LTBP3-219ENST00000530990 KIF27Q86VH2 1401 aa20.31■□□□□ 0.84
LTBP3-219ENST00000530990 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
LTBP3-219ENST00000530990 TRIM41Q8WV44 630 aa20.28■□□□□ 0.84
LTBP3-219ENST00000530990 FHAD1B1AJZ9 1412 aa20.27■□□□□ 0.84
LTBP3-219ENST00000530990 GRIN2AQ12879 1464 aa20.27■□□□□ 0.84
LTBP3-219ENST00000530990 CLASP1Q7Z460 1538 aa20.26■□□□□ 0.83
LTBP3-219ENST00000530990 CUL7Q14999 1698 aa20.26■□□□□ 0.83
LTBP3-219ENST00000530990 CEP170Q5SW79 1584 aa20.21■□□□□ 0.83
LTBP3-219ENST00000530990 IGF1RP08069 1367 aa20.2■□□□□ 0.82
LTBP3-219ENST00000530990 RUSC2Q8N2Y8 1516 aa20.19■□□□□ 0.82
LTBP3-219ENST00000530990 RIMBP3CA6NJZ7 1639 aa20.19■□□□□ 0.82
LTBP3-219ENST00000530990 RIMBP3BA6NNM3 1639 aa20.19■□□□□ 0.82
LTBP3-219ENST00000530990 RIMBP3Q9UFD9 1639 aa20.19■□□□□ 0.82
LTBP3-219ENST00000530990 NUP160Q12769 1436 aa20.17■□□□□ 0.82
LTBP3-219ENST00000530990 ARHGEF11O15085 1522 aa20.16■□□□□ 0.82
LTBP3-219ENST00000530990 CARMIL1Q5VZK9 1371 aa20.08■□□□□ 0.81
LTBP3-219ENST00000530990 CHIC1Q5VXU3 224 aa20.07■□□□□ 0.8
LTBP3-219ENST00000530990 SHROOM2Q13796 1616 aa20.06■□□□□ 0.8
LTBP3-219ENST00000530990 ARAP1Q96P48 1450 aa20.01■□□□□ 0.79
LTBP3-219ENST00000530990 RAPGEF2Q9Y4G8 1499 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms