RNA–Protein interactions for RNA: ENST00000530618.1

SSBP3-213, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 524 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-213ENST00000530618 NISCHQ9Y2I1 1504 aa11.88□□□□□ -0.51
SSBP3-213ENST00000530618 POTEDQ86YR6 584 aa11.4□□□□□ -0.58
SSBP3-213ENST00000530618 AEBP2Q6ZN18 517 aaPredicted RBP11.25□□□□□ -0.61
SSBP3-213ENST00000530618 CCDC180Q9P1Z9 1646 aa10.73□□□□□ -0.69
SSBP3-213ENST00000530618 ABCC9O60706 1549 aa10.65□□□□□ -0.7
SSBP3-213ENST00000530618 CHIC1Q5VXU3 224 aa10.36□□□□□ -0.75
SSBP3-213ENST00000530618 RB1CC1Q8TDY2 1594 aa10.14□□□□□ -0.79
SSBP3-213ENST00000530618 UNC13AQ9UPW8 1703 aa10.09□□□□□ -0.79
SSBP3-213ENST00000530618 NACADO15069 1562 aa10.09□□□□□ -0.79
SSBP3-213ENST00000530618 DNAJC5BQ9UF47 199 aa10.07□□□□□ -0.8
SSBP3-213ENST00000530618 MYO15BQ96JP2 1530 aa9.97□□□□□ -0.81
SSBP3-213ENST00000530618 BICRAQ9NZM4 1560 aa9.97□□□□□ -0.81
SSBP3-213ENST00000530618 ZCCHC6Q5VYS8 1495 aaKnown RBP9.87□□□□□ -0.83
SSBP3-213ENST00000530618 PABPN1Q86U42 306 aaKnown RBP eCLIP9.85□□□□□ -0.83
SSBP3-213ENST00000530618 DCAF1Q9Y4B6 1507 aa9.84□□□□□ -0.83
SSBP3-213ENST00000530618 DCAF8L2P0C7V8 631 aa9.78□□□□□ -0.84
SSBP3-213ENST00000530618 SHROOM4Q9ULL8 1493 aa9.74□□□□□ -0.85
SSBP3-213ENST00000530618 SENP3Q9H4L4 574 aaPredicted RBP9.72□□□□□ -0.85
SSBP3-213ENST00000530618 SCRIBQ14160 1630 aa9.71□□□□□ -0.85
SSBP3-213ENST00000530618 CC2D2AQ9P2K1 1620 aa9.68□□□□□ -0.86
SSBP3-213ENST00000530618 EIF4G1Q04637 1599 aaKnown RBP9.66□□□□□ -0.86
SSBP3-213ENST00000530618 CECR2Q9BXF3 1484 aa9.59□□□□□ -0.87
SSBP3-213ENST00000530618 PHF23Q9BUL5 403 aaPredicted RBP9.42□□□□□ -0.9
SSBP3-213ENST00000530618 NCAPD3P42695 1498 aa9.31□□□□□ -0.92
SSBP3-213ENST00000530618 SMARCA4P51532 1647 aa9.3□□□□□ -0.92
SSBP3-213ENST00000530618 FOXD1Q16676 465 aa9.29□□□□□ -0.92
SSBP3-213ENST00000530618 ATAD2BQ9ULI0 1458 aa9.28□□□□□ -0.92
SSBP3-213ENST00000530618 HMGXB3Q12766 1538 aa9.26□□□□□ -0.93
SSBP3-213ENST00000530618 PEG3Q9GZU2 1588 aa9.24□□□□□ -0.93
SSBP3-213ENST00000530618 SMARCA2P51531 1590 aa9.23□□□□□ -0.93
SSBP3-213ENST00000530618 CUX2O14529 1486 aa9.21□□□□□ -0.94
SSBP3-213ENST00000530618 DNAJC5Q9H3Z4 198 aa9.2□□□□□ -0.94
SSBP3-213ENST00000530618 BAZ1AQ9NRL2 1556 aaPredicted RBP9.19□□□□□ -0.94
SSBP3-213ENST00000530618 NESP48681 1621 aa9.19□□□□□ -0.94
SSBP3-213ENST00000530618 THOC2Q8NI27 1593 aaKnown RBP9.17□□□□□ -0.94
SSBP3-213ENST00000530618 MSH5O43196 834 aa9.17□□□□□ -0.94
SSBP3-213ENST00000530618 MROH2BQ7Z745 1585 aa9.16□□□□□ -0.94
SSBP3-213ENST00000530618 BAZ1BQ9UIG0 1483 aaKnown RBP9.14□□□□□ -0.95
SSBP3-213ENST00000530618 KIF21AQ7Z4S6 1674 aa9.13□□□□□ -0.95
SSBP3-213ENST00000530618 ERCC6Q03468 1493 aa9.13□□□□□ -0.95
SSBP3-213ENST00000530618 LAMC3Q9Y6N6 1575 aa9.11□□□□□ -0.95
SSBP3-213ENST00000530618 WIZO95785 1651 aa9.07□□□□□ -0.96
SSBP3-213ENST00000530618 WDR62O43379 1518 aa8.99□□□□□ -0.97
SSBP3-213ENST00000530618 CADPSQ9ULU8 1353 aa8.97□□□□□ -0.97
SSBP3-213ENST00000530618 PDS5BQ9NTI5 1447 aa8.97□□□□□ -0.97
SSBP3-213ENST00000530618 MRC2Q9UBG0 1479 aa8.96□□□□□ -0.98
SSBP3-213ENST00000530618 PRDM2Q13029 1718 aa8.94□□□□□ -0.98
SSBP3-213ENST00000530618 RSF1Q96T23 1441 aaPredicted RBP8.93□□□□□ -0.98
SSBP3-213ENST00000530618 TOP2AP11388 1531 aaKnown RBP8.93□□□□□ -0.98
SSBP3-213ENST00000530618 CFTRP13569 1480 aa8.91□□□□□ -0.98
SSBP3-213ENST00000530618 CEP164Q9UPV0 1460 aa8.89□□□□□ -0.99
SSBP3-213ENST00000530618 FANCD2Q9BXW9 1451 aa8.89□□□□□ -0.99
SSBP3-213ENST00000530618 URB2Q14146 1524 aaKnown RBP8.88□□□□□ -0.99
SSBP3-213ENST00000530618 CCDC88BA6NC98 1476 aa8.8□□□□□ -1
SSBP3-213ENST00000530618 ZNF608Q9ULD9 1512 aaPredicted RBP8.75□□□□□ -1.01
SSBP3-213ENST00000530618 TOPBP1Q92547 1522 aa8.75□□□□□ -1.01
SSBP3-213ENST00000530618 TARBP1Q13395 1621 aaKnown RBP8.74□□□□□ -1.01
SSBP3-213ENST00000530618 EIF4G3O43432 1585 aaKnown RBP8.73□□□□□ -1.01
SSBP3-213ENST00000530618 DNMBPQ6XZF7 1577 aa8.73□□□□□ -1.01
SSBP3-213ENST00000530618 RIMBP3CA6NJZ7 1639 aa8.72□□□□□ -1.01
SSBP3-213ENST00000530618 RIMBP3BA6NNM3 1639 aa8.72□□□□□ -1.01
SSBP3-213ENST00000530618 RIMBP3Q9UFD9 1639 aa8.72□□□□□ -1.01
SSBP3-213ENST00000530618 IFT140Q96RY7 1462 aa8.72□□□□□ -1.01
SSBP3-213ENST00000530618 CHD1O14646 1710 aa8.71□□□□□ -1.02
SSBP3-213ENST00000530618 CACNB1Q02641 598 aaPredicted RBP8.7□□□□□ -1.02
SSBP3-213ENST00000530618 TRIM41Q8WV44 630 aa8.68□□□□□ -1.02
SSBP3-213ENST00000530618 ABCC8Q09428 1581 aa8.66□□□□□ -1.02
SSBP3-213ENST00000530618 ARHGEF11O15085 1522 aa8.66□□□□□ -1.02
SSBP3-213ENST00000530618 POLA1P09884 1462 aaPredicted RBP8.66□□□□□ -1.02
SSBP3-213ENST00000530618 OSCARQ8IYS5 282 aa8.66□□□□□ -1.02
SSBP3-213ENST00000530618 WDR97A6NE52 1622 aa8.65□□□□□ -1.02
SSBP3-213ENST00000530618 POTEHQ6S545 545 aa8.63□□□□□ -1.03
SSBP3-213ENST00000530618 CUX1P39880 1505 aa8.62□□□□□ -1.03
SSBP3-213ENST00000530618 AQRO60306 1485 aaKnown RBP eCLIP8.62□□□□□ -1.036e-8■■■■□ 26
SSBP3-213ENST00000530618 RAD54L2Q9Y4B4 1467 aa8.61□□□□□ -1.03
SSBP3-213ENST00000530618 CLASP1Q7Z460 1538 aa8.59□□□□□ -1.03
SSBP3-213ENST00000530618 FGD5Q6ZNL6 1462 aa8.59□□□□□ -1.03
SSBP3-213ENST00000530618 ARAP1Q96P48 1450 aa8.59□□□□□ -1.03
SSBP3-213ENST00000530618 PBRM1Q86U86 1689 aa8.57□□□□□ -1.04
SSBP3-213ENST00000530618 ABCA5Q8WWZ7 1642 aa8.55□□□□□ -1.04
SSBP3-213ENST00000530618 SNAPC4Q5SXM2 1469 aa8.55□□□□□ -1.04
SSBP3-213ENST00000530618 SOGA1O94964 1423 aa8.54□□□□□ -1.04
SSBP3-213ENST00000530618 TDRD9Q8NDG6 1382 aaKnown RBP8.53□□□□□ -1.04
SSBP3-213ENST00000530618 MAGI1Q96QZ7 1491 aaPredicted RBP8.52□□□□□ -1.05
SSBP3-213ENST00000530618 BIVM-ERCC5R4GMW8 1640 aa8.51□□□□□ -1.05
SSBP3-213ENST00000530618 SYNJ1O43426 1573 aa8.5□□□□□ -1.05
SSBP3-213ENST00000530618 SYNJ2O15056 1496 aa8.5□□□□□ -1.05
SSBP3-213ENST00000530618 GRIN2BQ13224 1484 aa8.5□□□□□ -1.05
SSBP3-213ENST00000530618 ABCA10Q8WWZ4 1543 aa8.49□□□□□ -1.05
SSBP3-213ENST00000530618 CYB5RLQ6IPT4 315 aa8.47□□□□□ -1.05
SSBP3-213ENST00000530618 ADAMTS12P58397 1594 aa8.47□□□□□ -1.05
SSBP3-213ENST00000530618 ERCC6L2Q5T890 1561 aa8.47□□□□□ -1.05
SSBP3-213ENST00000530618 TOP2BQ02880 1626 aa8.47□□□□□ -1.05
SSBP3-213ENST00000530618 GAPVD1Q14C86 1478 aa8.46□□□□□ -1.05
SSBP3-213ENST00000530618 CEP170Q5SW79 1584 aa8.45□□□□□ -1.06
SSBP3-213ENST00000530618 SHROOM2Q13796 1616 aa8.45□□□□□ -1.06
SSBP3-213ENST00000530618 GRIN2AQ12879 1464 aa8.43□□□□□ -1.06
SSBP3-213ENST00000530618 FBLN2P98095 1184 aa8.42□□□□□ -1.06
SSBP3-213ENST00000530618 NUP160Q12769 1436 aa8.42□□□□□ -1.06
SSBP3-213ENST00000530618 SUPT5HO00267 1087 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms