RNA–Protein interactions for RNA: ENST00000530219.1

EIF3F-204, Transcript of eukaryotic translation initiation factor 3 subunit F, humanhuman

TSL 2

Gene EIF3F, Length 2,110 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3F-204ENST00000530219 NISCHQ9Y2I1 1504 aa23.07■■□□□ 1.28
EIF3F-204ENST00000530219 ABCC9O60706 1549 aa21.43■■□□□ 1.02
EIF3F-204ENST00000530219 CCDC180Q9P1Z9 1646 aa20.96■□□□□ 0.95
EIF3F-204ENST00000530219 DNAJC5BQ9UF47 199 aa20.6■□□□□ 0.89
EIF3F-204ENST00000530219 RB1CC1Q8TDY2 1594 aa20.21■□□□□ 0.83
EIF3F-204ENST00000530219 NACADO15069 1562 aa19.94■□□□□ 0.78
EIF3F-204ENST00000530219 PABPN1Q86U42 306 aaKnown RBP eCLIP19.85■□□□□ 0.77
EIF3F-204ENST00000530219 UNC13AQ9UPW8 1703 aa19.73■□□□□ 0.75
EIF3F-204ENST00000530219 BICRAQ9NZM4 1560 aa19.64■□□□□ 0.73
EIF3F-204ENST00000530219 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
EIF3F-204ENST00000530219 MYO15BQ96JP2 1530 aa19.52■□□□□ 0.72
EIF3F-204ENST00000530219 CECR2Q9BXF3 1484 aa19.38■□□□□ 0.69
EIF3F-204ENST00000530219 SHROOM4Q9ULL8 1493 aa19.36■□□□□ 0.69
EIF3F-204ENST00000530219 CC2D2AQ9P2K1 1620 aa19.36■□□□□ 0.69
EIF3F-204ENST00000530219 DNAJC5Q9H3Z4 198 aa19.34■□□□□ 0.69
EIF3F-204ENST00000530219 EIF4G1Q04637 1599 aaKnown RBP19.19■□□□□ 0.66
EIF3F-204ENST00000530219 DCAF1Q9Y4B6 1507 aa19.06■□□□□ 0.64
EIF3F-204ENST00000530219 SCRIBQ14160 1630 aa19.01■□□□□ 0.63
EIF3F-204ENST00000530219 ZCCHC6Q5VYS8 1495 aaKnown RBP19■□□□□ 0.63
EIF3F-204ENST00000530219 CUX2O14529 1486 aa18.75■□□□□ 0.59
EIF3F-204ENST00000530219 ERCC6Q03468 1493 aa18.55■□□□□ 0.56
EIF3F-204ENST00000530219 NCAPD3P42695 1498 aa18.42■□□□□ 0.54
EIF3F-204ENST00000530219 ATAD2BQ9ULI0 1458 aa18.27■□□□□ 0.51
EIF3F-204ENST00000530219 NESP48681 1621 aa18.26■□□□□ 0.51
EIF3F-204ENST00000530219 HMGXB3Q12766 1538 aa18.23■□□□□ 0.51
EIF3F-204ENST00000530219 THOC2Q8NI27 1593 aaKnown RBP18.22■□□□□ 0.51
EIF3F-204ENST00000530219 TRIM41Q8WV44 630 aa18.2■□□□□ 0.5
EIF3F-204ENST00000530219 SMARCA2P51531 1590 aa18.19■□□□□ 0.5
EIF3F-204ENST00000530219 SMARCA4P51532 1647 aa18.11■□□□□ 0.49
EIF3F-204ENST00000530219 SUPT5HO00267 1087 aaKnown RBP18.09■□□□□ 0.49
EIF3F-204ENST00000530219 LAMC3Q9Y6N6 1575 aa18.09■□□□□ 0.49
EIF3F-204ENST00000530219 BAZ1BQ9UIG0 1483 aaKnown RBP18.04■□□□□ 0.48
EIF3F-204ENST00000530219 KIF21AQ7Z4S6 1674 aa18.02■□□□□ 0.47
EIF3F-204ENST00000530219 PDS5BQ9NTI5 1447 aa17.99■□□□□ 0.47
EIF3F-204ENST00000530219 PEG3Q9GZU2 1588 aa17.97■□□□□ 0.47
EIF3F-204ENST00000530219 BAZ1AQ9NRL2 1556 aaPredicted RBP17.94■□□□□ 0.46
EIF3F-204ENST00000530219 HRCP23327 699 aa17.91■□□□□ 0.46
EIF3F-204ENST00000530219 MRC2Q9UBG0 1479 aa17.87■□□□□ 0.45
EIF3F-204ENST00000530219 CHIC1Q5VXU3 224 aa17.86■□□□□ 0.45
EIF3F-204ENST00000530219 WDR62O43379 1518 aa17.85■□□□□ 0.45
EIF3F-204ENST00000530219 CADPSQ9ULU8 1353 aa17.81■□□□□ 0.44
EIF3F-204ENST00000530219 OSCARQ8IYS5 282 aa17.77■□□□□ 0.43
EIF3F-204ENST00000530219 MROH2BQ7Z745 1585 aa17.75■□□□□ 0.43
EIF3F-204ENST00000530219 CEP164Q9UPV0 1460 aa17.67■□□□□ 0.42
EIF3F-204ENST00000530219 RIMBP3CA6NJZ7 1639 aa17.61■□□□□ 0.41
EIF3F-204ENST00000530219 RIMBP3BA6NNM3 1639 aa17.61■□□□□ 0.41
EIF3F-204ENST00000530219 RIMBP3Q9UFD9 1639 aa17.61■□□□□ 0.41
EIF3F-204ENST00000530219 FANCD2Q9BXW9 1451 aa17.6■□□□□ 0.41
EIF3F-204ENST00000530219 PCGF6Q9BYE7 350 aa17.54■□□□□ 0.4
EIF3F-204ENST00000530219 CFTRP13569 1480 aa17.5■□□□□ 0.39
EIF3F-204ENST00000530219 WIZO95785 1651 aa17.5■□□□□ 0.39
EIF3F-204ENST00000530219 URB2Q14146 1524 aaKnown RBP17.5■□□□□ 0.39
EIF3F-204ENST00000530219 ARHGEF11O15085 1522 aa17.49■□□□□ 0.39
EIF3F-204ENST00000530219 IFT140Q96RY7 1462 aa17.36■□□□□ 0.37
EIF3F-204ENST00000530219 CYB5RLQ6IPT4 315 aa17.36■□□□□ 0.37
EIF3F-204ENST00000530219 ZNF608Q9ULD9 1512 aaPredicted RBP17.36■□□□□ 0.37
EIF3F-204ENST00000530219 TRIM26Q12899 539 aaPredicted RBP17.35■□□□□ 0.37
EIF3F-204ENST00000530219 TRHP20396 242 aaPredicted RBP17.33■□□□□ 0.37
EIF3F-204ENST00000530219 ZEB1P37275 1124 aaPredicted RBP17.31■□□□□ 0.36
EIF3F-204ENST00000530219 PRDM2Q13029 1718 aa17.29■□□□□ 0.36
EIF3F-204ENST00000530219 ARAP1Q96P48 1450 aa17.29■□□□□ 0.36
EIF3F-204ENST00000530219 TOP2AP11388 1531 aaKnown RBP17.27■□□□□ 0.35
EIF3F-204ENST00000530219 AEBP2Q6ZN18 517 aaPredicted RBP17.24■□□□□ 0.35
EIF3F-204ENST00000530219 EIF4G3O43432 1585 aaKnown RBP17.24■□□□□ 0.35
EIF3F-204ENST00000530219 RSF1Q96T23 1441 aaPredicted RBP17.22■□□□□ 0.35
EIF3F-204ENST00000530219 TOPBP1Q92547 1522 aa17.22■□□□□ 0.35
EIF3F-204ENST00000530219 CHD1O14646 1710 aa17.22■□□□□ 0.35
EIF3F-204ENST00000530219 ABCC8Q09428 1581 aa17.17■□□□□ 0.34
EIF3F-204ENST00000530219 LOC105371045A0A1W2PR82 267 aa17.16■□□□□ 0.34
EIF3F-204ENST00000530219 PPARGC1BQ86YN6 1023 aaKnown RBP17.16■□□□□ 0.34
EIF3F-204ENST00000530219 AQRO60306 1485 aaKnown RBP eCLIP17.13■□□□□ 0.331e-6■■■■■ 30
EIF3F-204ENST00000530219 TARBP1Q13395 1621 aaKnown RBP17.11■□□□□ 0.33
EIF3F-204ENST00000530219 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
EIF3F-204ENST00000530219 PELP1Q8IZL8 1130 aaKnown RBP17.09■□□□□ 0.33
EIF3F-204ENST00000530219 FBLN2P98095 1184 aa17.08■□□□□ 0.33
EIF3F-204ENST00000530219 CCDC88BA6NC98 1476 aa17.07■□□□□ 0.32
EIF3F-204ENST00000530219 CLASP1Q7Z460 1538 aa17.04■□□□□ 0.32
EIF3F-204ENST00000530219 POLA1P09884 1462 aaPredicted RBP17■□□□□ 0.31
EIF3F-204ENST00000530219 SYNJ1O43426 1573 aa16.96■□□□□ 0.31
EIF3F-204ENST00000530219 SNAPC4Q5SXM2 1469 aa16.94■□□□□ 0.3
EIF3F-204ENST00000530219 WDR97A6NE52 1622 aa16.94■□□□□ 0.3
EIF3F-204ENST00000530219 RAD54L2Q9Y4B4 1467 aa16.93■□□□□ 0.3
EIF3F-204ENST00000530219 TDRD9Q8NDG6 1382 aaKnown RBP16.92■□□□□ 0.3
EIF3F-204ENST00000530219 SOGA1O94964 1423 aa16.91■□□□□ 0.3
EIF3F-204ENST00000530219 MAGI1Q96QZ7 1491 aaPredicted RBP16.9■□□□□ 0.3
EIF3F-204ENST00000530219 CHMP7Q8WUX9 453 aaPredicted RBP16.9■□□□□ 0.3
EIF3F-204ENST00000530219 GAPVD1Q14C86 1478 aa16.87■□□□□ 0.29
EIF3F-204ENST00000530219 SYNJ2O15056 1496 aa16.85■□□□□ 0.29
EIF3F-204ENST00000530219 GRIN2BQ13224 1484 aa16.84■□□□□ 0.29
EIF3F-204ENST00000530219 FGD5Q6ZNL6 1462 aa16.8■□□□□ 0.28
EIF3F-204ENST00000530219 PBRM1Q86U86 1689 aa16.73■□□□□ 0.27
EIF3F-204ENST00000530219 CUX1P39880 1505 aa16.71■□□□□ 0.27
EIF3F-204ENST00000530219 ERCC6L2Q5T890 1561 aa16.69■□□□□ 0.26
EIF3F-204ENST00000530219 KIF13AQ9H1H9 1805 aa16.66■□□□□ 0.26
EIF3F-204ENST00000530219 ABCA5Q8WWZ7 1642 aa16.63■□□□□ 0.25
EIF3F-204ENST00000530219 FAM9AQ8IZU1 332 aaPredicted RBP16.63■□□□□ 0.25
EIF3F-204ENST00000530219 CEP170Q5SW79 1584 aa16.63■□□□□ 0.25
EIF3F-204ENST00000530219 GRIN2AQ12879 1464 aa16.62■□□□□ 0.25
EIF3F-204ENST00000530219 ABCA10Q8WWZ4 1543 aa16.61■□□□□ 0.25
EIF3F-204ENST00000530219 SHROOM2Q13796 1616 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms