RNA–Protein interactions for RNA: ENST00000529866.5

COPB1-207, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 2

Gene COPB1, Length 729 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-207ENST00000529866 NISCHQ9Y2I1 1504 aa26.52■■□□□ 1.84
COPB1-207ENST00000529866 ABCC9O60706 1549 aa24.32■■□□□ 1.48
COPB1-207ENST00000529866 CCDC180Q9P1Z9 1646 aa23.92■■□□□ 1.42
COPB1-207ENST00000529866 DNAJC5BQ9UF47 199 aa23.08■■□□□ 1.29
COPB1-207ENST00000529866 RB1CC1Q8TDY2 1594 aa23■■□□□ 1.27
COPB1-207ENST00000529866 NACADO15069 1562 aa22.76■■□□□ 1.23
COPB1-207ENST00000529866 PABPN1Q86U42 306 aaKnown RBP eCLIP22.59■■□□□ 1.21
COPB1-207ENST00000529866 DCAF8L2P0C7V8 631 aa22.58■■□□□ 1.21
COPB1-207ENST00000529866 MYO15BQ96JP2 1530 aa22.35■■□□□ 1.17
COPB1-207ENST00000529866 UNC13AQ9UPW8 1703 aa22.27■■□□□ 1.16
COPB1-207ENST00000529866 BICRAQ9NZM4 1560 aa22.25■■□□□ 1.15
COPB1-207ENST00000529866 SHROOM4Q9ULL8 1493 aa22.08■■□□□ 1.12
COPB1-207ENST00000529866 CECR2Q9BXF3 1484 aa21.98■■□□□ 1.11
COPB1-207ENST00000529866 ZCCHC6Q5VYS8 1495 aaKnown RBP21.92■■□□□ 1.1
COPB1-207ENST00000529866 DCAF1Q9Y4B6 1507 aa21.91■■□□□ 1.1
COPB1-207ENST00000529866 CC2D2AQ9P2K1 1620 aa21.91■■□□□ 1.1
COPB1-207ENST00000529866 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
COPB1-207ENST00000529866 SCRIBQ14160 1630 aa21.78■■□□□ 1.08
COPB1-207ENST00000529866 DNAJC5Q9H3Z4 198 aa21.54■■□□□ 1.04
COPB1-207ENST00000529866 CUX2O14529 1486 aa21.17■□□□□ 0.98
COPB1-207ENST00000529866 ERCC6Q03468 1493 aa21.09■□□□□ 0.97
COPB1-207ENST00000529866 NCAPD3P42695 1498 aa21.02■□□□□ 0.96
COPB1-207ENST00000529866 ATAD2BQ9ULI0 1458 aa20.9■□□□□ 0.94
COPB1-207ENST00000529866 SMARCA2P51531 1590 aa20.84■□□□□ 0.93
COPB1-207ENST00000529866 HMGXB3Q12766 1538 aa20.83■□□□□ 0.92
COPB1-207ENST00000529866 NESP48681 1621 aa20.75■□□□□ 0.91
COPB1-207ENST00000529866 SMARCA4P51532 1647 aa20.74■□□□□ 0.91
COPB1-207ENST00000529866 BAZ1BQ9UIG0 1483 aaKnown RBP20.7■□□□□ 0.9
COPB1-207ENST00000529866 BAZ1AQ9NRL2 1556 aaPredicted RBP20.63■□□□□ 0.89
COPB1-207ENST00000529866 THOC2Q8NI27 1593 aaKnown RBP20.6■□□□□ 0.89
COPB1-207ENST00000529866 LAMC3Q9Y6N6 1575 aa20.59■□□□□ 0.89
COPB1-207ENST00000529866 PEG3Q9GZU2 1588 aa20.55■□□□□ 0.88
COPB1-207ENST00000529866 PDS5BQ9NTI5 1447 aa20.55■□□□□ 0.88
COPB1-207ENST00000529866 TRIM41Q8WV44 630 aa20.46■□□□□ 0.87
COPB1-207ENST00000529866 MROH2BQ7Z745 1585 aa20.4■□□□□ 0.86
COPB1-207ENST00000529866 KIF21AQ7Z4S6 1674 aa20.39■□□□□ 0.86
COPB1-207ENST00000529866 CADPSQ9ULU8 1353 aa20.39■□□□□ 0.85
COPB1-207ENST00000529866 MRC2Q9UBG0 1479 aa20.37■□□□□ 0.85
COPB1-207ENST00000529866 WDR62O43379 1518 aa20.3■□□□□ 0.84
COPB1-207ENST00000529866 CEP164Q9UPV0 1460 aa20.21■□□□□ 0.83
COPB1-207ENST00000529866 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
COPB1-207ENST00000529866 OSCARQ8IYS5 282 aa20.14■□□□□ 0.81
COPB1-207ENST00000529866 WIZO95785 1651 aa20.08■□□□□ 0.81
COPB1-207ENST00000529866 CFTRP13569 1480 aa20.06■□□□□ 0.8
COPB1-207ENST00000529866 URB2Q14146 1524 aaKnown RBP19.96■□□□□ 0.79
COPB1-207ENST00000529866 TOP2AP11388 1531 aaKnown RBP19.9■□□□□ 0.78
COPB1-207ENST00000529866 RSF1Q96T23 1441 aaPredicted RBP19.88■□□□□ 0.77
COPB1-207ENST00000529866 IFT140Q96RY7 1462 aa19.84■□□□□ 0.77
COPB1-207ENST00000529866 RIMBP3CA6NJZ7 1639 aa19.82■□□□□ 0.76
COPB1-207ENST00000529866 RIMBP3BA6NNM3 1639 aa19.82■□□□□ 0.76
COPB1-207ENST00000529866 RIMBP3Q9UFD9 1639 aa19.82■□□□□ 0.76
COPB1-207ENST00000529866 ARHGEF11O15085 1522 aa19.78■□□□□ 0.76
COPB1-207ENST00000529866 ZNF608Q9ULD9 1512 aaPredicted RBP19.77■□□□□ 0.76
COPB1-207ENST00000529866 TOPBP1Q92547 1522 aa19.7■□□□□ 0.74
COPB1-207ENST00000529866 CYB5RLQ6IPT4 315 aa19.68■□□□□ 0.74
COPB1-207ENST00000529866 ABCC8Q09428 1581 aa19.68■□□□□ 0.74
COPB1-207ENST00000529866 PRDM2Q13029 1718 aa19.67■□□□□ 0.74
COPB1-207ENST00000529866 CCDC88BA6NC98 1476 aa19.66■□□□□ 0.74
COPB1-207ENST00000529866 EIF4G3O43432 1585 aaKnown RBP19.63■□□□□ 0.73
COPB1-207ENST00000529866 TRHP20396 242 aaPredicted RBP19.6■□□□□ 0.73
COPB1-207ENST00000529866 DNMBPQ6XZF7 1577 aa19.59■□□□□ 0.73
COPB1-207ENST00000529866 AQRO60306 1485 aaKnown RBP eCLIP19.56■□□□□ 0.723e-8■■■■□ 26.6
COPB1-207ENST00000529866 FBLN2P98095 1184 aa19.56■□□□□ 0.72
COPB1-207ENST00000529866 ARAP1Q96P48 1450 aa19.55■□□□□ 0.72
COPB1-207ENST00000529866 TARBP1Q13395 1621 aaKnown RBP19.49■□□□□ 0.71
COPB1-207ENST00000529866 POLA1P09884 1462 aaPredicted RBP19.48■□□□□ 0.71
COPB1-207ENST00000529866 CHD1O14646 1710 aa19.48■□□□□ 0.71
COPB1-207ENST00000529866 TDRD9Q8NDG6 1382 aaKnown RBP19.4■□□□□ 0.7
COPB1-207ENST00000529866 SOGA1O94964 1423 aa19.4■□□□□ 0.7
COPB1-207ENST00000529866 RAD54L2Q9Y4B4 1467 aa19.39■□□□□ 0.69
COPB1-207ENST00000529866 SNAPC4Q5SXM2 1469 aa19.38■□□□□ 0.69
COPB1-207ENST00000529866 CHMP7Q8WUX9 453 aaPredicted RBP19.37■□□□□ 0.69
COPB1-207ENST00000529866 WDR97A6NE52 1622 aa19.35■□□□□ 0.69
COPB1-207ENST00000529866 AEBP2Q6ZN18 517 aaPredicted RBP19.34■□□□□ 0.69
COPB1-207ENST00000529866 CLASP1Q7Z460 1538 aa19.34■□□□□ 0.69
COPB1-207ENST00000529866 SYNJ1O43426 1573 aa19.33■□□□□ 0.69
COPB1-207ENST00000529866 MAGI1Q96QZ7 1491 aaPredicted RBP19.33■□□□□ 0.68
COPB1-207ENST00000529866 FGD5Q6ZNL6 1462 aa19.3■□□□□ 0.68
COPB1-207ENST00000529866 GRIN2BQ13224 1484 aa19.29■□□□□ 0.68
COPB1-207ENST00000529866 SYNJ2O15056 1496 aa19.27■□□□□ 0.67
COPB1-207ENST00000529866 GAPVD1Q14C86 1478 aa19.2■□□□□ 0.66
COPB1-207ENST00000529866 CUX1P39880 1505 aa19.2■□□□□ 0.66
COPB1-207ENST00000529866 ABCA10Q8WWZ4 1543 aa19.08■□□□□ 0.64
COPB1-207ENST00000529866 PBRM1Q86U86 1689 aa19.06■□□□□ 0.64
COPB1-207ENST00000529866 ABCA5Q8WWZ7 1642 aa19.03■□□□□ 0.64
COPB1-207ENST00000529866 GRIN2AQ12879 1464 aa19.03■□□□□ 0.64
COPB1-207ENST00000529866 NUP160Q12769 1436 aa18.99■□□□□ 0.63
COPB1-207ENST00000529866 WRNQ14191 1432 aaPredicted RBP eCLIP18.97■□□□□ 0.63
COPB1-207ENST00000529866 ERCC6L2Q5T890 1561 aa18.96■□□□□ 0.63
COPB1-207ENST00000529866 CEP170Q5SW79 1584 aa18.95■□□□□ 0.62
COPB1-207ENST00000529866 ADAMTS12P58397 1594 aa18.94■□□□□ 0.62
COPB1-207ENST00000529866 FHAD1B1AJZ9 1412 aa18.92■□□□□ 0.62
COPB1-207ENST00000529866 SHROOM2Q13796 1616 aa18.86■□□□□ 0.61
COPB1-207ENST00000529866 ERICH3Q5RHP9 1530 aa18.83■□□□□ 0.6
COPB1-207ENST00000529866 PRG4Q92954 1404 aaPredicted RBP18.83■□□□□ 0.6
COPB1-207ENST00000529866 TOP2BQ02880 1626 aa18.79■□□□□ 0.6
COPB1-207ENST00000529866 JPH4Q96JJ6 628 aa18.79■□□□□ 0.6
COPB1-207ENST00000529866 NPM1P06748 294 aaKnown RBP eCLIP18.78■□□□□ 0.6
COPB1-207ENST00000529866 FAM69CQ0P6D2 419 aa18.77■□□□□ 0.6
COPB1-207ENST00000529866 BIVM-ERCC5R4GMW8 1640 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms