RNA–Protein interactions for RNA: ENST00000529608.1

TGFBR3-208, Transcript of transforming growth factor beta receptor 3, humanhuman

TSL 5

Gene TGFBR3, Length 785 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-208ENST00000529608 AEBP2Q6ZN18 517 aaPredicted RBP23.64■■□□□ 1.37
TGFBR3-208ENST00000529608 CHIC1Q5VXU3 224 aa22.83■■□□□ 1.25
TGFBR3-208ENST00000529608 NISCHQ9Y2I1 1504 aa21.8■■□□□ 1.08
TGFBR3-208ENST00000529608 PHF23Q9BUL5 403 aaPredicted RBP20.08■□□□□ 0.81
TGFBR3-208ENST00000529608 SENP3Q9H4L4 574 aaPredicted RBP20.03■□□□□ 0.8
TGFBR3-208ENST00000529608 ABCC9O60706 1549 aa19.83■□□□□ 0.77
TGFBR3-208ENST00000529608 CCDC180Q9P1Z9 1646 aa19.65■□□□□ 0.74
TGFBR3-208ENST00000529608 DNAJC5BQ9UF47 199 aa18.82■□□□□ 0.6
TGFBR3-208ENST00000529608 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
TGFBR3-208ENST00000529608 FOXD1Q16676 465 aa18.66■□□□□ 0.58
TGFBR3-208ENST00000529608 NACADO15069 1562 aa18.57■□□□□ 0.56
TGFBR3-208ENST00000529608 UNC13AQ9UPW8 1703 aa18.49■□□□□ 0.55
TGFBR3-208ENST00000529608 DCAF8L2P0C7V8 631 aa18.42■□□□□ 0.54
TGFBR3-208ENST00000529608 PABPN1Q86U42 306 aaKnown RBP eCLIP18.42■□□□□ 0.54
TGFBR3-208ENST00000529608 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
TGFBR3-208ENST00000529608 BICRAQ9NZM4 1560 aa18.32■□□□□ 0.52
TGFBR3-208ENST00000529608 MYO15BQ96JP2 1530 aa18.23■□□□□ 0.51
TGFBR3-208ENST00000529608 ZCCHC6Q5VYS8 1495 aaKnown RBP18.04■□□□□ 0.48
TGFBR3-208ENST00000529608 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.47
TGFBR3-208ENST00000529608 SCRIBQ14160 1630 aa17.92■□□□□ 0.46
TGFBR3-208ENST00000529608 CC2D2AQ9P2K1 1620 aa17.92■□□□□ 0.46
TGFBR3-208ENST00000529608 SHROOM4Q9ULL8 1493 aa17.88■□□□□ 0.45
TGFBR3-208ENST00000529608 CECR2Q9BXF3 1484 aa17.85■□□□□ 0.45
TGFBR3-208ENST00000529608 EIF4G1Q04637 1599 aaKnown RBP17.83■□□□□ 0.44
TGFBR3-208ENST00000529608 PPP6R1Q9UPN7 881 aa17.79■□□□□ 0.44
TGFBR3-208ENST00000529608 ADRA2BP18089 450 aa17.74■□□□□ 0.43
TGFBR3-208ENST00000529608 PIAS4Q8N2W9 510 aaPredicted RBP17.5■□□□□ 0.39
TGFBR3-208ENST00000529608 DNAJC5Q9H3Z4 198 aa17.3■□□□□ 0.36
TGFBR3-208ENST00000529608 MSH5O43196 834 aa17.25■□□□□ 0.35
TGFBR3-208ENST00000529608 NCAPD3P42695 1498 aa17.16■□□□□ 0.34
TGFBR3-208ENST00000529608 CUX2O14529 1486 aa17.1■□□□□ 0.33
TGFBR3-208ENST00000529608 ATAD2BQ9ULI0 1458 aa17.1■□□□□ 0.33
TGFBR3-208ENST00000529608 SMARCA4P51532 1647 aa17.07■□□□□ 0.32
TGFBR3-208ENST00000529608 ERCC6Q03468 1493 aa17.05■□□□□ 0.32
TGFBR3-208ENST00000529608 NESP48681 1621 aa17.03■□□□□ 0.32
TGFBR3-208ENST00000529608 HMGXB3Q12766 1538 aa17.02■□□□□ 0.32
TGFBR3-208ENST00000529608 SMARCA2P51531 1590 aa17■□□□□ 0.31
TGFBR3-208ENST00000529608 BAZ1AQ9NRL2 1556 aaPredicted RBP16.9■□□□□ 0.3
TGFBR3-208ENST00000529608 BAZ1BQ9UIG0 1483 aaKnown RBP16.89■□□□□ 0.29
TGFBR3-208ENST00000529608 THOC2Q8NI27 1593 aaKnown RBP16.89■□□□□ 0.29
TGFBR3-208ENST00000529608 PEG3Q9GZU2 1588 aa16.89■□□□□ 0.29
TGFBR3-208ENST00000529608 MROH2BQ7Z745 1585 aa16.84■□□□□ 0.29
TGFBR3-208ENST00000529608 KIF21AQ7Z4S6 1674 aa16.82■□□□□ 0.28
TGFBR3-208ENST00000529608 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
TGFBR3-208ENST00000529608 WIZO95785 1651 aa16.65■□□□□ 0.26
TGFBR3-208ENST00000529608 PDS5BQ9NTI5 1447 aa16.65■□□□□ 0.26
TGFBR3-208ENST00000529608 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
TGFBR3-208ENST00000529608 WDR62O43379 1518 aa16.57■□□□□ 0.24
TGFBR3-208ENST00000529608 MRC2Q9UBG0 1479 aa16.57■□□□□ 0.24
TGFBR3-208ENST00000529608 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
TGFBR3-208ENST00000529608 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.23
TGFBR3-208ENST00000529608 FANCD2Q9BXW9 1451 aa16.44■□□□□ 0.22
TGFBR3-208ENST00000529608 CFTRP13569 1480 aa16.41■□□□□ 0.22
TGFBR3-208ENST00000529608 RSF1Q96T23 1441 aaPredicted RBP16.38■□□□□ 0.21
TGFBR3-208ENST00000529608 URB2Q14146 1524 aaKnown RBP16.37■□□□□ 0.21
TGFBR3-208ENST00000529608 TOP2AP11388 1531 aaKnown RBP16.36■□□□□ 0.21
TGFBR3-208ENST00000529608 PRDM2Q13029 1718 aa16.3■□□□□ 0.2
TGFBR3-208ENST00000529608 OSCARQ8IYS5 282 aa16.25■□□□□ 0.19
TGFBR3-208ENST00000529608 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
TGFBR3-208ENST00000529608 PPP4R3CPQ6ZMV5 832 aa16.2■□□□□ 0.18
TGFBR3-208ENST00000529608 CCDC88BA6NC98 1476 aa16.19■□□□□ 0.18
TGFBR3-208ENST00000529608 RIMBP3CA6NJZ7 1639 aa16.19■□□□□ 0.18
TGFBR3-208ENST00000529608 RIMBP3BA6NNM3 1639 aa16.19■□□□□ 0.18
TGFBR3-208ENST00000529608 RIMBP3Q9UFD9 1639 aa16.19■□□□□ 0.18
TGFBR3-208ENST00000529608 MAPK8IP2Q13387 824 aaPredicted RBP16.17■□□□□ 0.18
TGFBR3-208ENST00000529608 POTEDQ86YR6 584 aa16.15■□□□□ 0.18
TGFBR3-208ENST00000529608 SCAF1Q9H7N4 1312 aaKnown RBP16.15■□□□□ 0.18
TGFBR3-208ENST00000529608 TOPBP1Q92547 1522 aa16.14■□□□□ 0.17
TGFBR3-208ENST00000529608 IFT140Q96RY7 1462 aa16.12■□□□□ 0.17
TGFBR3-208ENST00000529608 EIF4G3O43432 1585 aaKnown RBP16.1■□□□□ 0.17
TGFBR3-208ENST00000529608 ARHGEF11O15085 1522 aa16.08■□□□□ 0.16
TGFBR3-208ENST00000529608 TARBP1Q13395 1621 aaKnown RBP16.05■□□□□ 0.16
TGFBR3-208ENST00000529608 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
TGFBR3-208ENST00000529608 CHD1O14646 1710 aa16.05■□□□□ 0.16
TGFBR3-208ENST00000529608 AQRO60306 1485 aaKnown RBP eCLIP16.01■□□□□ 0.157e-9■■■■■ 34.8
TGFBR3-208ENST00000529608 ABCC8Q09428 1581 aa16■□□□□ 0.15
TGFBR3-208ENST00000529608 DMRT2Q9Y5R5 561 aa15.97■□□□□ 0.15
TGFBR3-208ENST00000529608 POLA1P09884 1462 aaPredicted RBP15.97■□□□□ 0.15
TGFBR3-208ENST00000529608 RAD54L2Q9Y4B4 1467 aa15.93■□□□□ 0.14
TGFBR3-208ENST00000529608 CYB5RLQ6IPT4 315 aa15.93■□□□□ 0.14
TGFBR3-208ENST00000529608 ARAP1Q96P48 1450 aa15.92■□□□□ 0.14
TGFBR3-208ENST00000529608 FBLN2P98095 1184 aa15.87■□□□□ 0.13
TGFBR3-208ENST00000529608 TDRD9Q8NDG6 1382 aaKnown RBP15.87■□□□□ 0.13
TGFBR3-208ENST00000529608 SOGA1O94964 1423 aa15.85■□□□□ 0.13
TGFBR3-208ENST00000529608 FGD5Q6ZNL6 1462 aa15.84■□□□□ 0.13
TGFBR3-208ENST00000529608 SNAPC4Q5SXM2 1469 aa15.83■□□□□ 0.12
TGFBR3-208ENST00000529608 CLASP1Q7Z460 1538 aa15.83■□□□□ 0.12
TGFBR3-208ENST00000529608 CUX1P39880 1505 aa15.82■□□□□ 0.12
TGFBR3-208ENST00000529608 WDR97A6NE52 1622 aa15.8■□□□□ 0.12
TGFBR3-208ENST00000529608 CNKSR2Q8WXI2 1034 aa15.78■□□□□ 0.12
TGFBR3-208ENST00000529608 TRHP20396 242 aaPredicted RBP15.77■□□□□ 0.12
TGFBR3-208ENST00000529608 PBRM1Q86U86 1689 aa15.74■□□□□ 0.11
TGFBR3-208ENST00000529608 MAGI1Q96QZ7 1491 aaPredicted RBP15.73■□□□□ 0.11
TGFBR3-208ENST00000529608 SYNJ1O43426 1573 aa15.73■□□□□ 0.11
TGFBR3-208ENST00000529608 GRIN2BQ13224 1484 aa15.71■□□□□ 0.11
TGFBR3-208ENST00000529608 CHMP7Q8WUX9 453 aaPredicted RBP15.7■□□□□ 0.1
TGFBR3-208ENST00000529608 SYNJ2O15056 1496 aa15.7■□□□□ 0.1
TGFBR3-208ENST00000529608 ABCA5Q8WWZ7 1642 aa15.67■□□□□ 0.1
TGFBR3-208ENST00000529608 GAPVD1Q14C86 1478 aa15.65■□□□□ 0.1
TGFBR3-208ENST00000529608 NCBP3Q53F19 620 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms