RNA–Protein interactions for RNA: ENST00000529545.1

VPS11-203, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-203ENST00000529545 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
VPS11-203ENST00000529545 CHIC1Q5VXU3 224 aa23.1■■□□□ 1.29
VPS11-203ENST00000529545 NISCHQ9Y2I1 1504 aa22.74■■□□□ 1.23
VPS11-203ENST00000529545 ABCC9O60706 1549 aa20.78■□□□□ 0.92
VPS11-203ENST00000529545 CCDC180Q9P1Z9 1646 aa20.54■□□□□ 0.88
VPS11-203ENST00000529545 SENP3Q9H4L4 574 aaPredicted RBP20.54■□□□□ 0.88
VPS11-203ENST00000529545 PHF23Q9BUL5 403 aaPredicted RBP20.21■□□□□ 0.83
VPS11-203ENST00000529545 RB1CC1Q8TDY2 1594 aa19.7■□□□□ 0.74
VPS11-203ENST00000529545 DNAJC5BQ9UF47 199 aa19.67■□□□□ 0.74
VPS11-203ENST00000529545 NACADO15069 1562 aa19.49■□□□□ 0.71
VPS11-203ENST00000529545 DCAF8L2P0C7V8 631 aa19.4■□□□□ 0.7
VPS11-203ENST00000529545 PABPN1Q86U42 306 aaKnown RBP eCLIP19.32■□□□□ 0.68
VPS11-203ENST00000529545 UNC13AQ9UPW8 1703 aa19.2■□□□□ 0.66
VPS11-203ENST00000529545 MYO15BQ96JP2 1530 aa19.11■□□□□ 0.65
VPS11-203ENST00000529545 BICRAQ9NZM4 1560 aa19.06■□□□□ 0.64
VPS11-203ENST00000529545 FOXD1Q16676 465 aa18.99■□□□□ 0.63
VPS11-203ENST00000529545 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
VPS11-203ENST00000529545 ZCCHC6Q5VYS8 1495 aaKnown RBP18.77■□□□□ 0.6
VPS11-203ENST00000529545 DCAF1Q9Y4B6 1507 aa18.77■□□□□ 0.6
VPS11-203ENST00000529545 CC2D2AQ9P2K1 1620 aa18.76■□□□□ 0.59
VPS11-203ENST00000529545 CECR2Q9BXF3 1484 aa18.76■□□□□ 0.59
VPS11-203ENST00000529545 SCRIBQ14160 1630 aa18.69■□□□□ 0.58
VPS11-203ENST00000529545 EIF4G1Q04637 1599 aaKnown RBP18.65■□□□□ 0.58
VPS11-203ENST00000529545 PLPPR3Q6T4P5 718 aa18.63■□□□□ 0.57
VPS11-203ENST00000529545 DNAJC5Q9H3Z4 198 aa18.32■□□□□ 0.52
VPS11-203ENST00000529545 CUX2O14529 1486 aa18.04■□□□□ 0.48
VPS11-203ENST00000529545 ERCC6Q03468 1493 aa18.01■□□□□ 0.47
VPS11-203ENST00000529545 NCAPD3P42695 1498 aa17.98■□□□□ 0.47
VPS11-203ENST00000529545 PPP6R1Q9UPN7 881 aa17.9■□□□□ 0.46
VPS11-203ENST00000529545 ADRA2BP18089 450 aa17.88■□□□□ 0.45
VPS11-203ENST00000529545 ATAD2BQ9ULI0 1458 aa17.88■□□□□ 0.45
VPS11-203ENST00000529545 PIAS4Q8N2W9 510 aaPredicted RBP17.87■□□□□ 0.45
VPS11-203ENST00000529545 SMARCA2P51531 1590 aa17.85■□□□□ 0.45
VPS11-203ENST00000529545 HMGXB3Q12766 1538 aa17.82■□□□□ 0.44
VPS11-203ENST00000529545 MSH5O43196 834 aa17.81■□□□□ 0.44
VPS11-203ENST00000529545 SMARCA4P51532 1647 aa17.8■□□□□ 0.44
VPS11-203ENST00000529545 NESP48681 1621 aa17.75■□□□□ 0.43
VPS11-203ENST00000529545 BAZ1BQ9UIG0 1483 aaKnown RBP17.72■□□□□ 0.43
VPS11-203ENST00000529545 BAZ1AQ9NRL2 1556 aaPredicted RBP17.69■□□□□ 0.42
VPS11-203ENST00000529545 LAMC3Q9Y6N6 1575 aa17.63■□□□□ 0.41
VPS11-203ENST00000529545 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
VPS11-203ENST00000529545 PEG3Q9GZU2 1588 aa17.61■□□□□ 0.41
VPS11-203ENST00000529545 PDS5BQ9NTI5 1447 aa17.56■□□□□ 0.4
VPS11-203ENST00000529545 KIF21AQ7Z4S6 1674 aa17.54■□□□□ 0.4
VPS11-203ENST00000529545 MROH2BQ7Z745 1585 aa17.5■□□□□ 0.39
VPS11-203ENST00000529545 TRIM41Q8WV44 630 aa17.45■□□□□ 0.38
VPS11-203ENST00000529545 CADPSQ9ULU8 1353 aa17.43■□□□□ 0.38
VPS11-203ENST00000529545 MRC2Q9UBG0 1479 aa17.4■□□□□ 0.38
VPS11-203ENST00000529545 WDR62O43379 1518 aa17.34■□□□□ 0.37
VPS11-203ENST00000529545 CEP164Q9UPV0 1460 aa17.29■□□□□ 0.36
VPS11-203ENST00000529545 WIZO95785 1651 aa17.29■□□□□ 0.36
VPS11-203ENST00000529545 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
VPS11-203ENST00000529545 OSCARQ8IYS5 282 aa17.21■□□□□ 0.35
VPS11-203ENST00000529545 CFTRP13569 1480 aa17.16■□□□□ 0.34
VPS11-203ENST00000529545 URB2Q14146 1524 aaKnown RBP17.07■□□□□ 0.32
VPS11-203ENST00000529545 TOP2AP11388 1531 aaKnown RBP17.06■□□□□ 0.32
VPS11-203ENST00000529545 RSF1Q96T23 1441 aaPredicted RBP17.05■□□□□ 0.32
VPS11-203ENST00000529545 PRDM2Q13029 1718 aa16.99■□□□□ 0.31
VPS11-203ENST00000529545 RIMBP3CA6NJZ7 1639 aa16.96■□□□□ 0.3
VPS11-203ENST00000529545 RIMBP3BA6NNM3 1639 aa16.96■□□□□ 0.3
VPS11-203ENST00000529545 RIMBP3Q9UFD9 1639 aa16.96■□□□□ 0.3
VPS11-203ENST00000529545 IFT140Q96RY7 1462 aa16.95■□□□□ 0.3
VPS11-203ENST00000529545 ZNF608Q9ULD9 1512 aaPredicted RBP16.91■□□□□ 0.3
VPS11-203ENST00000529545 CCDC88BA6NC98 1476 aa16.87■□□□□ 0.29
VPS11-203ENST00000529545 ARHGEF11O15085 1522 aa16.87■□□□□ 0.29
VPS11-203ENST00000529545 ABCC8Q09428 1581 aa16.87■□□□□ 0.29
VPS11-203ENST00000529545 TOPBP1Q92547 1522 aa16.86■□□□□ 0.29
VPS11-203ENST00000529545 CYB5RLQ6IPT4 315 aa16.82■□□□□ 0.28
VPS11-203ENST00000529545 EIF4G3O43432 1585 aaKnown RBP16.81■□□□□ 0.28
VPS11-203ENST00000529545 POTEDQ86YR6 584 aa16.79■□□□□ 0.28
VPS11-203ENST00000529545 DNMBPQ6XZF7 1577 aa16.79■□□□□ 0.28
VPS11-203ENST00000529545 CHD1O14646 1710 aa16.76■□□□□ 0.27
VPS11-203ENST00000529545 TRHP20396 242 aaPredicted RBP16.75■□□□□ 0.27
VPS11-203ENST00000529545 FBLN2P98095 1184 aa16.75■□□□□ 0.27
VPS11-203ENST00000529545 AQRO60306 1485 aaKnown RBP eCLIP16.74■□□□□ 0.27
VPS11-203ENST00000529545 TARBP1Q13395 1621 aaKnown RBP16.72■□□□□ 0.27
VPS11-203ENST00000529545 POLA1P09884 1462 aaPredicted RBP16.67■□□□□ 0.26
VPS11-203ENST00000529545 ARAP1Q96P48 1450 aa16.67■□□□□ 0.26
VPS11-203ENST00000529545 SOGA1O94964 1423 aa16.62■□□□□ 0.25
VPS11-203ENST00000529545 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
VPS11-203ENST00000529545 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
VPS11-203ENST00000529545 CHMP7Q8WUX9 453 aaPredicted RBP16.58■□□□□ 0.24
VPS11-203ENST00000529545 WDR97A6NE52 1622 aa16.57■□□□□ 0.24
VPS11-203ENST00000529545 SNAPC4Q5SXM2 1469 aa16.56■□□□□ 0.24
VPS11-203ENST00000529545 SYNJ1O43426 1573 aa16.55■□□□□ 0.24
VPS11-203ENST00000529545 SCAF1Q9H7N4 1312 aaKnown RBP16.54■□□□□ 0.24
VPS11-203ENST00000529545 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
VPS11-203ENST00000529545 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
VPS11-203ENST00000529545 CLASP1Q7Z460 1538 aa16.53■□□□□ 0.24
VPS11-203ENST00000529545 GRIN2BQ13224 1484 aa16.5■□□□□ 0.23
VPS11-203ENST00000529545 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
VPS11-203ENST00000529545 CUX1P39880 1505 aa16.46■□□□□ 0.23
VPS11-203ENST00000529545 GAPVD1Q14C86 1478 aa16.42■□□□□ 0.22
VPS11-203ENST00000529545 PBRM1Q86U86 1689 aa16.41■□□□□ 0.22
VPS11-203ENST00000529545 ABCA10Q8WWZ4 1543 aa16.33■□□□□ 0.2
VPS11-203ENST00000529545 ABCA5Q8WWZ7 1642 aa16.32■□□□□ 0.2
VPS11-203ENST00000529545 MAPK8IP2Q13387 824 aaPredicted RBP16.3■□□□□ 0.2
VPS11-203ENST00000529545 PPP4R3CPQ6ZMV5 832 aa16.3■□□□□ 0.2
VPS11-203ENST00000529545 DMRT2Q9Y5R5 561 aa16.29■□□□□ 0.2
VPS11-203ENST00000529545 GRIN2AQ12879 1464 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms