RNA–Protein interactions for RNA: ENST00000529205.1

HIF3A-212, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-212ENST00000529205 NISCHQ9Y2I1 1504 aa34.02■■■■□ 3.04
HIF3A-212ENST00000529205 ABCC9O60706 1549 aa30.98■■■□□ 2.55
HIF3A-212ENST00000529205 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
HIF3A-212ENST00000529205 RB1CC1Q8TDY2 1594 aa29.39■■■□□ 2.29
HIF3A-212ENST00000529205 DNAJC5BQ9UF47 199 aa29.29■■■□□ 2.28
HIF3A-212ENST00000529205 NACADO15069 1562 aa29.1■■■□□ 2.25
HIF3A-212ENST00000529205 DCAF8L2P0C7V8 631 aa29.01■■■□□ 2.23
HIF3A-212ENST00000529205 PABPN1Q86U42 306 aaKnown RBP eCLIP28.83■■■□□ 2.21
HIF3A-212ENST00000529205 MYO15BQ96JP2 1530 aa28.59■■■□□ 2.17
HIF3A-212ENST00000529205 UNC13AQ9UPW8 1703 aa28.57■■■□□ 2.16
HIF3A-212ENST00000529205 BICRAQ9NZM4 1560 aa28.42■■■□□ 2.14
HIF3A-212ENST00000529205 SHROOM4Q9ULL8 1493 aa28.14■■■□□ 2.09
HIF3A-212ENST00000529205 ZCCHC6Q5VYS8 1495 aaKnown RBP28.11■■■□□ 2.09
HIF3A-212ENST00000529205 DCAF1Q9Y4B6 1507 aa28.09■■■□□ 2.09
HIF3A-212ENST00000529205 CECR2Q9BXF3 1484 aa27.96■■■□□ 2.07
HIF3A-212ENST00000529205 CC2D2AQ9P2K1 1620 aa27.94■■■□□ 2.06
HIF3A-212ENST00000529205 SCRIBQ14160 1630 aa27.9■■■□□ 2.06
HIF3A-212ENST00000529205 EIF4G1Q04637 1599 aaKnown RBP27.82■■■□□ 2.04
HIF3A-212ENST00000529205 DNAJC5Q9H3Z4 198 aa27.22■■□□□ 1.95
HIF3A-212ENST00000529205 CUX2O14529 1486 aa26.87■■□□□ 1.89
HIF3A-212ENST00000529205 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
HIF3A-212ENST00000529205 ERCC6Q03468 1493 aa26.85■■□□□ 1.89
HIF3A-212ENST00000529205 ATAD2BQ9ULI0 1458 aa26.71■■□□□ 1.87
HIF3A-212ENST00000529205 SMARCA2P51531 1590 aa26.67■■□□□ 1.86
HIF3A-212ENST00000529205 HMGXB3Q12766 1538 aa26.61■■□□□ 1.85
HIF3A-212ENST00000529205 SMARCA4P51532 1647 aa26.58■■□□□ 1.85
HIF3A-212ENST00000529205 NESP48681 1621 aa26.48■■□□□ 1.83
HIF3A-212ENST00000529205 BAZ1BQ9UIG0 1483 aaKnown RBP26.48■■□□□ 1.83
HIF3A-212ENST00000529205 BAZ1AQ9NRL2 1556 aaPredicted RBP26.47■■□□□ 1.83
HIF3A-212ENST00000529205 PEG3Q9GZU2 1588 aa26.33■■□□□ 1.8
HIF3A-212ENST00000529205 LAMC3Q9Y6N6 1575 aa26.32■■□□□ 1.8
HIF3A-212ENST00000529205 THOC2Q8NI27 1593 aaKnown RBP26.25■■□□□ 1.79
HIF3A-212ENST00000529205 PDS5BQ9NTI5 1447 aa26.23■■□□□ 1.79
HIF3A-212ENST00000529205 MROH2BQ7Z745 1585 aa26.18■■□□□ 1.78
HIF3A-212ENST00000529205 KIF21AQ7Z4S6 1674 aa26.11■■□□□ 1.77
HIF3A-212ENST00000529205 CADPSQ9ULU8 1353 aa26.06■■□□□ 1.76
HIF3A-212ENST00000529205 MRC2Q9UBG0 1479 aa25.97■■□□□ 1.75
HIF3A-212ENST00000529205 TRIM41Q8WV44 630 aa25.94■■□□□ 1.74
HIF3A-212ENST00000529205 WDR62O43379 1518 aa25.88■■□□□ 1.73
HIF3A-212ENST00000529205 WIZO95785 1651 aa25.84■■□□□ 1.73
HIF3A-212ENST00000529205 CEP164Q9UPV0 1460 aa25.82■■□□□ 1.72
HIF3A-212ENST00000529205 FANCD2Q9BXW9 1451 aa25.74■■□□□ 1.71
HIF3A-212ENST00000529205 OSCARQ8IYS5 282 aa25.67■■□□□ 1.7
HIF3A-212ENST00000529205 CFTRP13569 1480 aa25.66■■□□□ 1.7
HIF3A-212ENST00000529205 RSF1Q96T23 1441 aaPredicted RBP25.56■■□□□ 1.68
HIF3A-212ENST00000529205 TOP2AP11388 1531 aaKnown RBP25.53■■□□□ 1.68
HIF3A-212ENST00000529205 URB2Q14146 1524 aaKnown RBP25.5■■□□□ 1.67
HIF3A-212ENST00000529205 IFT140Q96RY7 1462 aa25.32■■□□□ 1.64
HIF3A-212ENST00000529205 PRDM2Q13029 1718 aa25.31■■□□□ 1.64
HIF3A-212ENST00000529205 CCDC88BA6NC98 1476 aa25.25■■□□□ 1.63
HIF3A-212ENST00000529205 RIMBP3CA6NJZ7 1639 aa25.23■■□□□ 1.63
HIF3A-212ENST00000529205 RIMBP3BA6NNM3 1639 aa25.23■■□□□ 1.63
HIF3A-212ENST00000529205 RIMBP3Q9UFD9 1639 aa25.23■■□□□ 1.63
HIF3A-212ENST00000529205 ZNF608Q9ULD9 1512 aaPredicted RBP25.22■■□□□ 1.63
HIF3A-212ENST00000529205 ABCC8Q09428 1581 aa25.22■■□□□ 1.63
HIF3A-212ENST00000529205 TOPBP1Q92547 1522 aa25.2■■□□□ 1.62
HIF3A-212ENST00000529205 ARHGEF11O15085 1522 aa25.14■■□□□ 1.62
HIF3A-212ENST00000529205 EIF4G3O43432 1585 aaKnown RBP25.08■■□□□ 1.61
HIF3A-212ENST00000529205 DNMBPQ6XZF7 1577 aa25.08■■□□□ 1.61
HIF3A-212ENST00000529205 CYB5RLQ6IPT4 315 aa25.06■■□□□ 1.6
HIF3A-212ENST00000529205 FBLN2P98095 1184 aa25.02■■□□□ 1.6
HIF3A-212ENST00000529205 AQRO60306 1485 aaKnown RBP eCLIP25.01■■□□□ 1.59
HIF3A-212ENST00000529205 TARBP1Q13395 1621 aaKnown RBP24.95■■□□□ 1.58
HIF3A-212ENST00000529205 TRHP20396 242 aaPredicted RBP24.95■■□□□ 1.58
HIF3A-212ENST00000529205 CHD1O14646 1710 aa24.93■■□□□ 1.58
HIF3A-212ENST00000529205 POLA1P09884 1462 aaPredicted RBP24.91■■□□□ 1.58
HIF3A-212ENST00000529205 SOGA1O94964 1423 aa24.86■■□□□ 1.57
HIF3A-212ENST00000529205 ARAP1Q96P48 1450 aa24.84■■□□□ 1.57
HIF3A-212ENST00000529205 TDRD9Q8NDG6 1382 aaKnown RBP24.83■■□□□ 1.57
HIF3A-212ENST00000529205 RAD54L2Q9Y4B4 1467 aa24.83■■□□□ 1.56
HIF3A-212ENST00000529205 CHMP7Q8WUX9 453 aaPredicted RBP24.79■■□□□ 1.56
HIF3A-212ENST00000529205 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
HIF3A-212ENST00000529205 SNAPC4Q5SXM2 1469 aa24.74■■□□□ 1.55
HIF3A-212ENST00000529205 FGD5Q6ZNL6 1462 aa24.72■■□□□ 1.55
HIF3A-212ENST00000529205 MAGI1Q96QZ7 1491 aaPredicted RBP24.7■■□□□ 1.54
HIF3A-212ENST00000529205 SYNJ1O43426 1573 aa24.69■■□□□ 1.54
HIF3A-212ENST00000529205 GRIN2BQ13224 1484 aa24.67■■□□□ 1.54
HIF3A-212ENST00000529205 CLASP1Q7Z460 1538 aa24.65■■□□□ 1.54
HIF3A-212ENST00000529205 SYNJ2O15056 1496 aa24.62■■□□□ 1.53
HIF3A-212ENST00000529205 CUX1P39880 1505 aa24.61■■□□□ 1.53
HIF3A-212ENST00000529205 GAPVD1Q14C86 1478 aa24.53■■□□□ 1.52
HIF3A-212ENST00000529205 AEBP2Q6ZN18 517 aaPredicted RBP24.49■■□□□ 1.51
HIF3A-212ENST00000529205 PBRM1Q86U86 1689 aa24.47■■□□□ 1.51
HIF3A-212ENST00000529205 ABCA10Q8WWZ4 1543 aa24.43■■□□□ 1.5
HIF3A-212ENST00000529205 ABCA5Q8WWZ7 1642 aa24.37■■□□□ 1.49
HIF3A-212ENST00000529205 WRNQ14191 1432 aaPredicted RBP eCLIP24.34■■□□□ 1.49
HIF3A-212ENST00000529205 GRIN2AQ12879 1464 aa24.32■■□□□ 1.48
HIF3A-212ENST00000529205 SUPT5HO00267 1087 aaKnown RBP24.3■■□□□ 1.48
HIF3A-212ENST00000529205 NUP160Q12769 1436 aa24.24■■□□□ 1.47
HIF3A-212ENST00000529205 FHAD1B1AJZ9 1412 aa24.23■■□□□ 1.47
HIF3A-212ENST00000529205 ADAMTS12P58397 1594 aa24.22■■□□□ 1.47
HIF3A-212ENST00000529205 CEP170Q5SW79 1584 aa24.21■■□□□ 1.47
HIF3A-212ENST00000529205 ERCC6L2Q5T890 1561 aa24.2■■□□□ 1.47
HIF3A-212ENST00000529205 TOP2BQ02880 1626 aa24.17■■□□□ 1.46
HIF3A-212ENST00000529205 BIVM-ERCC5R4GMW8 1640 aa24.14■■□□□ 1.46
HIF3A-212ENST00000529205 ERICH3Q5RHP9 1530 aa24.14■■□□□ 1.45
HIF3A-212ENST00000529205 SHROOM2Q13796 1616 aa24.13■■□□□ 1.45
HIF3A-212ENST00000529205 PRG4Q92954 1404 aaPredicted RBP24.08■■□□□ 1.44
HIF3A-212ENST00000529205 JPH4Q96JJ6 628 aa24.07■■□□□ 1.44
HIF3A-212ENST00000529205 NPM1P06748 294 aaKnown RBP eCLIP24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms