RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 NISCHQ9Y2I1 1504 aa27.09■■□□□ 1.93
USF1-208ENST00000528768 ABCC9O60706 1549 aa25.02■■□□□ 1.6
USF1-208ENST00000528768 CCDC180Q9P1Z9 1646 aa24.61■■□□□ 1.53
USF1-208ENST00000528768 DNAJC5BQ9UF47 199 aa23.91■■□□□ 1.42
USF1-208ENST00000528768 RB1CC1Q8TDY2 1594 aa23.69■■□□□ 1.38
USF1-208ENST00000528768 NACADO15069 1562 aa23.41■■□□□ 1.34
USF1-208ENST00000528768 PABPN1Q86U42 306 aaKnown RBP eCLIP23.18■■□□□ 1.3
USF1-208ENST00000528768 DCAF8L2P0C7V8 631 aa23.04■■□□□ 1.28
USF1-208ENST00000528768 UNC13AQ9UPW8 1703 aa23■■□□□ 1.27
USF1-208ENST00000528768 MYO15BQ96JP2 1530 aa22.97■■□□□ 1.27
USF1-208ENST00000528768 BICRAQ9NZM4 1560 aa22.92■■□□□ 1.26
USF1-208ENST00000528768 SHROOM4Q9ULL8 1493 aa22.77■■□□□ 1.24
USF1-208ENST00000528768 CECR2Q9BXF3 1484 aa22.66■■□□□ 1.22
USF1-208ENST00000528768 CC2D2AQ9P2K1 1620 aa22.6■■□□□ 1.21
USF1-208ENST00000528768 DNAJC5Q9H3Z4 198 aa22.51■■□□□ 1.19
USF1-208ENST00000528768 EIF4G1Q04637 1599 aaKnown RBP22.44■■□□□ 1.18
USF1-208ENST00000528768 DCAF1Q9Y4B6 1507 aa22.43■■□□□ 1.18
USF1-208ENST00000528768 ZCCHC6Q5VYS8 1495 aaKnown RBP22.33■■□□□ 1.16
USF1-208ENST00000528768 SCRIBQ14160 1630 aa22.25■■□□□ 1.15
USF1-208ENST00000528768 CUX2O14529 1486 aa21.94■■□□□ 1.1
USF1-208ENST00000528768 ERCC6Q03468 1493 aa21.72■■□□□ 1.07
USF1-208ENST00000528768 NCAPD3P42695 1498 aa21.61■■□□□ 1.05
USF1-208ENST00000528768 ATAD2BQ9ULI0 1458 aa21.41■■□□□ 1.02
USF1-208ENST00000528768 HMGXB3Q12766 1538 aa21.39■■□□□ 1.02
USF1-208ENST00000528768 SMARCA2P51531 1590 aa21.39■■□□□ 1.01
USF1-208ENST00000528768 NESP48681 1621 aa21.3■■□□□ 1
USF1-208ENST00000528768 THOC2Q8NI27 1593 aaKnown RBP21.26■□□□□ 0.99
USF1-208ENST00000528768 SMARCA4P51532 1647 aa21.23■□□□□ 0.99
USF1-208ENST00000528768 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
USF1-208ENST00000528768 TRIM41Q8WV44 630 aa21.2■□□□□ 0.98
USF1-208ENST00000528768 BAZ1BQ9UIG0 1483 aaKnown RBP21.19■□□□□ 0.98
USF1-208ENST00000528768 PDS5BQ9NTI5 1447 aa21.13■□□□□ 0.97
USF1-208ENST00000528768 BAZ1AQ9NRL2 1556 aaPredicted RBP21.1■□□□□ 0.97
USF1-208ENST00000528768 PEG3Q9GZU2 1588 aa21.1■□□□□ 0.97
USF1-208ENST00000528768 KIF21AQ7Z4S6 1674 aa21.02■□□□□ 0.96
USF1-208ENST00000528768 MRC2Q9UBG0 1479 aa20.93■□□□□ 0.94
USF1-208ENST00000528768 CADPSQ9ULU8 1353 aa20.91■□□□□ 0.94
USF1-208ENST00000528768 WDR62O43379 1518 aa20.89■□□□□ 0.94
USF1-208ENST00000528768 OSCARQ8IYS5 282 aa20.82■□□□□ 0.92
USF1-208ENST00000528768 MROH2BQ7Z745 1585 aa20.8■□□□□ 0.92
USF1-208ENST00000528768 CEP164Q9UPV0 1460 aa20.74■□□□□ 0.91
USF1-208ENST00000528768 FANCD2Q9BXW9 1451 aa20.64■□□□□ 0.89
USF1-208ENST00000528768 CFTRP13569 1480 aa20.55■□□□□ 0.88
USF1-208ENST00000528768 RIMBP3CA6NJZ7 1639 aa20.52■□□□□ 0.88
USF1-208ENST00000528768 RIMBP3BA6NNM3 1639 aa20.52■□□□□ 0.88
USF1-208ENST00000528768 RIMBP3Q9UFD9 1639 aa20.52■□□□□ 0.88
USF1-208ENST00000528768 WIZO95785 1651 aa20.5■□□□□ 0.87
USF1-208ENST00000528768 URB2Q14146 1524 aaKnown RBP20.47■□□□□ 0.87
USF1-208ENST00000528768 ARHGEF11O15085 1522 aa20.43■□□□□ 0.86
USF1-208ENST00000528768 IFT140Q96RY7 1462 aa20.37■□□□□ 0.85
USF1-208ENST00000528768 TOP2AP11388 1531 aaKnown RBP20.29■□□□□ 0.84
USF1-208ENST00000528768 SUPT5HO00267 1087 aaKnown RBP20.29■□□□□ 0.84
USF1-208ENST00000528768 CYB5RLQ6IPT4 315 aa20.29■□□□□ 0.84
USF1-208ENST00000528768 ZNF608Q9ULD9 1512 aaPredicted RBP20.27■□□□□ 0.84
USF1-208ENST00000528768 PRDM2Q13029 1718 aa20.27■□□□□ 0.83
USF1-208ENST00000528768 TRHP20396 242 aaPredicted RBP20.26■□□□□ 0.83
USF1-208ENST00000528768 ABCC8Q09428 1581 aa20.22■□□□□ 0.83
USF1-208ENST00000528768 RSF1Q96T23 1441 aaPredicted RBP20.2■□□□□ 0.82
USF1-208ENST00000528768 TOPBP1Q92547 1522 aa20.17■□□□□ 0.82
USF1-208ENST00000528768 EIF4G3O43432 1585 aaKnown RBP20.17■□□□□ 0.82
USF1-208ENST00000528768 ARAP1Q96P48 1450 aa20.16■□□□□ 0.82
USF1-208ENST00000528768 AEBP2Q6ZN18 517 aaPredicted RBP20.15■□□□□ 0.82
USF1-208ENST00000528768 CHD1O14646 1710 aa20.09■□□□□ 0.81
USF1-208ENST00000528768 DNMBPQ6XZF7 1577 aa20.08■□□□□ 0.8
USF1-208ENST00000528768 AQRO60306 1485 aaKnown RBP eCLIP20.05■□□□□ 0.86e-8■■■■■ 40.9
USF1-208ENST00000528768 FBLN2P98095 1184 aa20.04■□□□□ 0.8
USF1-208ENST00000528768 CCDC88BA6NC98 1476 aa20.04■□□□□ 0.8
USF1-208ENST00000528768 TARBP1Q13395 1621 aaKnown RBP20.03■□□□□ 0.8
USF1-208ENST00000528768 POLA1P09884 1462 aaPredicted RBP19.93■□□□□ 0.78
USF1-208ENST00000528768 WDR97A6NE52 1622 aa19.92■□□□□ 0.78
USF1-208ENST00000528768 CLASP1Q7Z460 1538 aa19.91■□□□□ 0.78
USF1-208ENST00000528768 SYNJ1O43426 1573 aa19.89■□□□□ 0.77
USF1-208ENST00000528768 CHMP7Q8WUX9 453 aaPredicted RBP19.86■□□□□ 0.77
USF1-208ENST00000528768 MAGI1Q96QZ7 1491 aaPredicted RBP19.86■□□□□ 0.77
USF1-208ENST00000528768 SOGA1O94964 1423 aa19.85■□□□□ 0.77
USF1-208ENST00000528768 SNAPC4Q5SXM2 1469 aa19.84■□□□□ 0.77
USF1-208ENST00000528768 TDRD9Q8NDG6 1382 aaKnown RBP19.83■□□□□ 0.77
USF1-208ENST00000528768 RAD54L2Q9Y4B4 1467 aa19.81■□□□□ 0.76
USF1-208ENST00000528768 SYNJ2O15056 1496 aa19.78■□□□□ 0.76
USF1-208ENST00000528768 GRIN2BQ13224 1484 aa19.78■□□□□ 0.76
USF1-208ENST00000528768 GAPVD1Q14C86 1478 aa19.75■□□□□ 0.75
USF1-208ENST00000528768 FGD5Q6ZNL6 1462 aa19.71■□□□□ 0.75
USF1-208ENST00000528768 CHIC1Q5VXU3 224 aa19.62■□□□□ 0.73
USF1-208ENST00000528768 CUX1P39880 1505 aa19.59■□□□□ 0.73
USF1-208ENST00000528768 PBRM1Q86U86 1689 aa19.58■□□□□ 0.72
USF1-208ENST00000528768 ABCA10Q8WWZ4 1543 aa19.51■□□□□ 0.71
USF1-208ENST00000528768 ABCA5Q8WWZ7 1642 aa19.49■□□□□ 0.71
USF1-208ENST00000528768 GRIN2AQ12879 1464 aa19.48■□□□□ 0.71
USF1-208ENST00000528768 CEP170Q5SW79 1584 aa19.46■□□□□ 0.71
USF1-208ENST00000528768 NUP160Q12769 1436 aa19.46■□□□□ 0.71
USF1-208ENST00000528768 ERCC6L2Q5T890 1561 aa19.45■□□□□ 0.7
USF1-208ENST00000528768 SHROOM2Q13796 1616 aa19.42■□□□□ 0.7
USF1-208ENST00000528768 KIF13AQ9H1H9 1805 aa19.41■□□□□ 0.7
USF1-208ENST00000528768 ADAMTS12P58397 1594 aa19.38■□□□□ 0.69
USF1-208ENST00000528768 FHAD1B1AJZ9 1412 aa19.36■□□□□ 0.69
USF1-208ENST00000528768 WRNQ14191 1432 aaPredicted RBP eCLIP19.35■□□□□ 0.69
USF1-208ENST00000528768 NPM1P06748 294 aaKnown RBP eCLIP19.33■□□□□ 0.68
USF1-208ENST00000528768 ABCC10Q5T3U5 1492 aa19.33■□□□□ 0.68
USF1-208ENST00000528768 FAM69CQ0P6D2 419 aa19.31■□□□□ 0.68
USF1-208ENST00000528768 PRG4Q92954 1404 aaPredicted RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms