RNA–Protein interactions for RNA: ENST00000528230.5

TRAPPC4-209, Transcript of trafficking protein particle complex 4, humanhuman

TSL 3 BASIC

Gene TRAPPC4, Length 583 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-209ENST00000528230 NISCHQ9Y2I1 1504 aa29.69■■■□□ 2.34
TRAPPC4-209ENST00000528230 CCDC180Q9P1Z9 1646 aa26.5■■□□□ 1.83
TRAPPC4-209ENST00000528230 ABCC9O60706 1549 aa26.01■■□□□ 1.75
TRAPPC4-209ENST00000528230 RB1CC1Q8TDY2 1594 aa25.01■■□□□ 1.59
TRAPPC4-209ENST00000528230 NACADO15069 1562 aa24.96■■□□□ 1.59
TRAPPC4-209ENST00000528230 DCAF8L2P0C7V8 631 aa24.84■■□□□ 1.57
TRAPPC4-209ENST00000528230 MYO15BQ96JP2 1530 aa24.78■■□□□ 1.56
TRAPPC4-209ENST00000528230 ZCCHC6Q5VYS8 1495 aaKnown RBP24.68■■□□□ 1.54
TRAPPC4-209ENST00000528230 DCAF1Q9Y4B6 1507 aa24.6■■□□□ 1.53
TRAPPC4-209ENST00000528230 UNC13AQ9UPW8 1703 aa24.44■■□□□ 1.5
TRAPPC4-209ENST00000528230 PABPN1Q86U42 306 aaKnown RBP eCLIP24.27■■□□□ 1.48
TRAPPC4-209ENST00000528230 BICRAQ9NZM4 1560 aa24.23■■□□□ 1.47
TRAPPC4-209ENST00000528230 SCRIBQ14160 1630 aa24.08■■□□□ 1.45
TRAPPC4-209ENST00000528230 DNAJC5BQ9UF47 199 aa24.04■■□□□ 1.44
TRAPPC4-209ENST00000528230 SHROOM4Q9ULL8 1493 aa24■■□□□ 1.43
TRAPPC4-209ENST00000528230 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
TRAPPC4-209ENST00000528230 CC2D2AQ9P2K1 1620 aa23.55■■□□□ 1.36
TRAPPC4-209ENST00000528230 CECR2Q9BXF3 1484 aa23.41■■□□□ 1.34
TRAPPC4-209ENST00000528230 SMARCA4P51532 1647 aa23.06■■□□□ 1.28
TRAPPC4-209ENST00000528230 BAZ1AQ9NRL2 1556 aaPredicted RBP23.03■■□□□ 1.28
TRAPPC4-209ENST00000528230 NCAPD3P42695 1498 aa23.02■■□□□ 1.28
TRAPPC4-209ENST00000528230 ATAD2BQ9ULI0 1458 aa22.98■■□□□ 1.27
TRAPPC4-209ENST00000528230 SMARCA2P51531 1590 aa22.97■■□□□ 1.27
TRAPPC4-209ENST00000528230 PEG3Q9GZU2 1588 aa22.88■■□□□ 1.25
TRAPPC4-209ENST00000528230 HMGXB3Q12766 1538 aa22.87■■□□□ 1.25
TRAPPC4-209ENST00000528230 MROH2BQ7Z745 1585 aa22.85■■□□□ 1.25
TRAPPC4-209ENST00000528230 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
TRAPPC4-209ENST00000528230 BAZ1BQ9UIG0 1483 aaKnown RBP22.78■■□□□ 1.24
TRAPPC4-209ENST00000528230 WIZO95785 1651 aa22.6■■□□□ 1.21
TRAPPC4-209ENST00000528230 RSF1Q96T23 1441 aaPredicted RBP22.55■■□□□ 1.2
TRAPPC4-209ENST00000528230 NESP48681 1621 aa22.45■■□□□ 1.18
TRAPPC4-209ENST00000528230 ERCC6Q03468 1493 aa22.44■■□□□ 1.18
TRAPPC4-209ENST00000528230 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
TRAPPC4-209ENST00000528230 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
TRAPPC4-209ENST00000528230 CADPSQ9ULU8 1353 aa22.33■■□□□ 1.17
TRAPPC4-209ENST00000528230 CUX2O14529 1486 aa22.3■■□□□ 1.16
TRAPPC4-209ENST00000528230 PDS5BQ9NTI5 1447 aa22.29■■□□□ 1.16
TRAPPC4-209ENST00000528230 KIF21AQ7Z4S6 1674 aa22.21■■□□□ 1.15
TRAPPC4-209ENST00000528230 THOC2Q8NI27 1593 aaKnown RBP22.17■■□□□ 1.14
TRAPPC4-209ENST00000528230 CFTRP13569 1480 aa22.16■■□□□ 1.14
TRAPPC4-209ENST00000528230 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
TRAPPC4-209ENST00000528230 FANCD2Q9BXW9 1451 aa22.05■■□□□ 1.12
TRAPPC4-209ENST00000528230 MRC2Q9UBG0 1479 aa22.04■■□□□ 1.12
TRAPPC4-209ENST00000528230 CEP164Q9UPV0 1460 aa22.03■■□□□ 1.12
TRAPPC4-209ENST00000528230 PRDM2Q13029 1718 aa22.01■■□□□ 1.11
TRAPPC4-209ENST00000528230 WDR62O43379 1518 aa21.98■■□□□ 1.11
TRAPPC4-209ENST00000528230 URB2Q14146 1524 aaKnown RBP21.83■■□□□ 1.09
TRAPPC4-209ENST00000528230 SUPT5HO00267 1087 aaKnown RBP21.82■■□□□ 1.08
TRAPPC4-209ENST00000528230 DNAJC5Q9H3Z4 198 aa21.82■■□□□ 1.08
TRAPPC4-209ENST00000528230 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
TRAPPC4-209ENST00000528230 TOPBP1Q92547 1522 aa21.69■■□□□ 1.06
TRAPPC4-209ENST00000528230 CHIC1Q5VXU3 224 aa21.68■■□□□ 1.06
TRAPPC4-209ENST00000528230 DNMBPQ6XZF7 1577 aa21.65■■□□□ 1.06
TRAPPC4-209ENST00000528230 IFT140Q96RY7 1462 aa21.6■■□□□ 1.05
TRAPPC4-209ENST00000528230 POLA1P09884 1462 aaPredicted RBP21.48■■□□□ 1.03
TRAPPC4-209ENST00000528230 ZNF608Q9ULD9 1512 aaPredicted RBP21.48■■□□□ 1.03
TRAPPC4-209ENST00000528230 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
TRAPPC4-209ENST00000528230 CUX1P39880 1505 aa21.45■■□□□ 1.02
TRAPPC4-209ENST00000528230 SOGA1O94964 1423 aa21.41■■□□□ 1.02
TRAPPC4-209ENST00000528230 FGD5Q6ZNL6 1462 aa21.4■■□□□ 1.02
TRAPPC4-209ENST00000528230 EIF4G3O43432 1585 aaKnown RBP21.4■■□□□ 1.02
TRAPPC4-209ENST00000528230 RAD54L2Q9Y4B4 1467 aa21.38■■□□□ 1.01
TRAPPC4-209ENST00000528230 OSCARQ8IYS5 282 aa21.37■■□□□ 1.01
TRAPPC4-209ENST00000528230 AQRO60306 1485 aaKnown RBP eCLIP21.35■■□□□ 1.011e-6■■■■□ 24.3
TRAPPC4-209ENST00000528230 WDR97A6NE52 1622 aa21.33■■□□□ 1.01
TRAPPC4-209ENST00000528230 TDRD9Q8NDG6 1382 aaKnown RBP21.28■■□□□ 1
TRAPPC4-209ENST00000528230 WRNQ14191 1432 aaPredicted RBP eCLIP21.26■□□□□ 0.99
TRAPPC4-209ENST00000528230 BIVM-ERCC5R4GMW8 1640 aa21.25■□□□□ 0.99
TRAPPC4-209ENST00000528230 TOP2BQ02880 1626 aa21.24■□□□□ 0.99
TRAPPC4-209ENST00000528230 ABCA10Q8WWZ4 1543 aa21.21■□□□□ 0.99
TRAPPC4-209ENST00000528230 SYNJ1O43426 1573 aa21.19■□□□□ 0.98
TRAPPC4-209ENST00000528230 GRIN2BQ13224 1484 aa21.18■□□□□ 0.98
TRAPPC4-209ENST00000528230 CHD1O14646 1710 aa21.18■□□□□ 0.98
TRAPPC4-209ENST00000528230 GAPVD1Q14C86 1478 aa21.16■□□□□ 0.98
TRAPPC4-209ENST00000528230 MAGI1Q96QZ7 1491 aaPredicted RBP21.14■□□□□ 0.98
TRAPPC4-209ENST00000528230 SNAPC4Q5SXM2 1469 aa21.13■□□□□ 0.97
TRAPPC4-209ENST00000528230 ABCA5Q8WWZ7 1642 aa21.13■□□□□ 0.97
TRAPPC4-209ENST00000528230 PBRM1Q86U86 1689 aa21.12■□□□□ 0.97
TRAPPC4-209ENST00000528230 FBLN2P98095 1184 aa21.12■□□□□ 0.97
TRAPPC4-209ENST00000528230 CHMP7Q8WUX9 453 aaPredicted RBP21.07■□□□□ 0.96
TRAPPC4-209ENST00000528230 SYNJ2O15056 1496 aa21.06■□□□□ 0.96
TRAPPC4-209ENST00000528230 RIMBP3CA6NJZ7 1639 aa21■□□□□ 0.95
TRAPPC4-209ENST00000528230 RIMBP3BA6NNM3 1639 aa21■□□□□ 0.95
TRAPPC4-209ENST00000528230 RIMBP3Q9UFD9 1639 aa21■□□□□ 0.95
TRAPPC4-209ENST00000528230 ARHGEF11O15085 1522 aa20.97■□□□□ 0.95
TRAPPC4-209ENST00000528230 ERICH3Q5RHP9 1530 aa20.97■□□□□ 0.95
TRAPPC4-209ENST00000528230 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
TRAPPC4-209ENST00000528230 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
TRAPPC4-209ENST00000528230 ADAMTS12P58397 1594 aa20.92■□□□□ 0.94
TRAPPC4-209ENST00000528230 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
TRAPPC4-209ENST00000528230 GRIN2AQ12879 1464 aa20.89■□□□□ 0.94
TRAPPC4-209ENST00000528230 KIF27Q86VH2 1401 aa20.85■□□□□ 0.93
TRAPPC4-209ENST00000528230 NUP160Q12769 1436 aa20.82■□□□□ 0.92
TRAPPC4-209ENST00000528230 CYB5RLQ6IPT4 315 aa20.8■□□□□ 0.92
TRAPPC4-209ENST00000528230 IGF1RP08069 1367 aa20.79■□□□□ 0.92
TRAPPC4-209ENST00000528230 CEP170Q5SW79 1584 aa20.78■□□□□ 0.92
TRAPPC4-209ENST00000528230 ARAP1Q96P48 1450 aa20.78■□□□□ 0.92
TRAPPC4-209ENST00000528230 CUL7Q14999 1698 aa20.74■□□□□ 0.91
TRAPPC4-209ENST00000528230 SHROOM2Q13796 1616 aa20.69■□□□□ 0.9
TRAPPC4-209ENST00000528230 CARMIL1Q5VZK9 1371 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms