RNA–Protein interactions for RNA: ENST00000527949.1

NR1H3-230, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 2 BASIC

Gene NR1H3, Length 1,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-230ENST00000527949 NISCHQ9Y2I1 1504 aa27.57■■■□□ 2
NR1H3-230ENST00000527949 ABCC9O60706 1549 aa24.97■■□□□ 1.59
NR1H3-230ENST00000527949 CCDC180Q9P1Z9 1646 aa24.72■■□□□ 1.55
NR1H3-230ENST00000527949 RB1CC1Q8TDY2 1594 aa23.72■■□□□ 1.39
NR1H3-230ENST00000527949 DNAJC5BQ9UF47 199 aa23.66■■□□□ 1.38
NR1H3-230ENST00000527949 NACADO15069 1562 aa23.5■■□□□ 1.35
NR1H3-230ENST00000527949 DCAF8L2P0C7V8 631 aa23.24■■□□□ 1.31
NR1H3-230ENST00000527949 PABPN1Q86U42 306 aaKnown RBP eCLIP23.19■■□□□ 1.3
NR1H3-230ENST00000527949 MYO15BQ96JP2 1530 aa23.14■■□□□ 1.3
NR1H3-230ENST00000527949 UNC13AQ9UPW8 1703 aa22.94■■□□□ 1.26
NR1H3-230ENST00000527949 BICRAQ9NZM4 1560 aa22.93■■□□□ 1.26
NR1H3-230ENST00000527949 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
NR1H3-230ENST00000527949 DCAF1Q9Y4B6 1507 aa22.91■■□□□ 1.26
NR1H3-230ENST00000527949 SHROOM4Q9ULL8 1493 aa22.82■■□□□ 1.24
NR1H3-230ENST00000527949 CECR2Q9BXF3 1484 aa22.6■■□□□ 1.21
NR1H3-230ENST00000527949 CC2D2AQ9P2K1 1620 aa22.54■■□□□ 1.2
NR1H3-230ENST00000527949 EIF4G1Q04637 1599 aaKnown RBP22.45■■□□□ 1.18
NR1H3-230ENST00000527949 SCRIBQ14160 1630 aa22.41■■□□□ 1.18
NR1H3-230ENST00000527949 DNAJC5Q9H3Z4 198 aa22.11■■□□□ 1.13
NR1H3-230ENST00000527949 CUX2O14529 1486 aa21.78■■□□□ 1.08
NR1H3-230ENST00000527949 NCAPD3P42695 1498 aa21.71■■□□□ 1.07
NR1H3-230ENST00000527949 ERCC6Q03468 1493 aa21.67■■□□□ 1.06
NR1H3-230ENST00000527949 ATAD2BQ9ULI0 1458 aa21.54■■□□□ 1.04
NR1H3-230ENST00000527949 SMARCA2P51531 1590 aa21.52■■□□□ 1.04
NR1H3-230ENST00000527949 HMGXB3Q12766 1538 aa21.5■■□□□ 1.03
NR1H3-230ENST00000527949 SMARCA4P51532 1647 aa21.44■■□□□ 1.02
NR1H3-230ENST00000527949 BAZ1AQ9NRL2 1556 aaPredicted RBP21.4■■□□□ 1.02
NR1H3-230ENST00000527949 BAZ1BQ9UIG0 1483 aaKnown RBP21.33■■□□□ 1.01
NR1H3-230ENST00000527949 PEG3Q9GZU2 1588 aa21.32■■□□□ 1
NR1H3-230ENST00000527949 NESP48681 1621 aa21.31■■□□□ 1
NR1H3-230ENST00000527949 LAMC3Q9Y6N6 1575 aa21.24■□□□□ 0.99
NR1H3-230ENST00000527949 PDS5BQ9NTI5 1447 aa21.2■□□□□ 0.98
NR1H3-230ENST00000527949 THOC2Q8NI27 1593 aaKnown RBP21.19■□□□□ 0.98
NR1H3-230ENST00000527949 MROH2BQ7Z745 1585 aa21.19■□□□□ 0.98
NR1H3-230ENST00000527949 CADPSQ9ULU8 1353 aa21.03■□□□□ 0.96
NR1H3-230ENST00000527949 KIF21AQ7Z4S6 1674 aa20.99■□□□□ 0.95
NR1H3-230ENST00000527949 MRC2Q9UBG0 1479 aa20.96■□□□□ 0.95
NR1H3-230ENST00000527949 TRIM41Q8WV44 630 aa20.93■□□□□ 0.94
NR1H3-230ENST00000527949 WIZO95785 1651 aa20.92■□□□□ 0.94
NR1H3-230ENST00000527949 WDR62O43379 1518 aa20.91■□□□□ 0.94
NR1H3-230ENST00000527949 RSF1Q96T23 1441 aaPredicted RBP20.87■□□□□ 0.93
NR1H3-230ENST00000527949 CEP164Q9UPV0 1460 aa20.82■□□□□ 0.92
NR1H3-230ENST00000527949 TOP2AP11388 1531 aaKnown RBP20.76■□□□□ 0.91
NR1H3-230ENST00000527949 OSCARQ8IYS5 282 aa20.75■□□□□ 0.91
NR1H3-230ENST00000527949 FANCD2Q9BXW9 1451 aa20.75■□□□□ 0.91
NR1H3-230ENST00000527949 CFTRP13569 1480 aa20.7■□□□□ 0.9
NR1H3-230ENST00000527949 URB2Q14146 1524 aaKnown RBP20.54■□□□□ 0.88
NR1H3-230ENST00000527949 CCDC88BA6NC98 1476 aa20.48■□□□□ 0.87
NR1H3-230ENST00000527949 PRDM2Q13029 1718 aa20.46■□□□□ 0.87
NR1H3-230ENST00000527949 IFT140Q96RY7 1462 aa20.44■□□□□ 0.86
NR1H3-230ENST00000527949 ABCC8Q09428 1581 aa20.37■□□□□ 0.85
NR1H3-230ENST00000527949 RIMBP3CA6NJZ7 1639 aa20.36■□□□□ 0.85
NR1H3-230ENST00000527949 RIMBP3BA6NNM3 1639 aa20.36■□□□□ 0.85
NR1H3-230ENST00000527949 RIMBP3Q9UFD9 1639 aa20.36■□□□□ 0.85
NR1H3-230ENST00000527949 ARHGEF11O15085 1522 aa20.32■□□□□ 0.84
NR1H3-230ENST00000527949 ZNF608Q9ULD9 1512 aaPredicted RBP20.32■□□□□ 0.84
NR1H3-230ENST00000527949 TOPBP1Q92547 1522 aa20.29■□□□□ 0.84
NR1H3-230ENST00000527949 CYB5RLQ6IPT4 315 aa20.21■□□□□ 0.83
NR1H3-230ENST00000527949 EIF4G3O43432 1585 aaKnown RBP20.21■□□□□ 0.83
NR1H3-230ENST00000527949 DNMBPQ6XZF7 1577 aa20.21■□□□□ 0.83
NR1H3-230ENST00000527949 AQRO60306 1485 aaKnown RBP eCLIP20.12■□□□□ 0.811e-7■■□□□ 12.1
NR1H3-230ENST00000527949 TRHP20396 242 aaPredicted RBP20.11■□□□□ 0.81
NR1H3-230ENST00000527949 FBLN2P98095 1184 aa20.11■□□□□ 0.81
NR1H3-230ENST00000527949 TARBP1Q13395 1621 aaKnown RBP20.1■□□□□ 0.81
NR1H3-230ENST00000527949 POLA1P09884 1462 aaPredicted RBP20.07■□□□□ 0.8
NR1H3-230ENST00000527949 ARAP1Q96P48 1450 aa20.07■□□□□ 0.8
NR1H3-230ENST00000527949 CHD1O14646 1710 aa20.05■□□□□ 0.8
NR1H3-230ENST00000527949 WDR97A6NE52 1622 aa20.02■□□□□ 0.79
NR1H3-230ENST00000527949 SOGA1O94964 1423 aa20.02■□□□□ 0.79
NR1H3-230ENST00000527949 SUPT5HO00267 1087 aaKnown RBP19.99■□□□□ 0.79
NR1H3-230ENST00000527949 TDRD9Q8NDG6 1382 aaKnown RBP19.96■□□□□ 0.79
NR1H3-230ENST00000527949 CHMP7Q8WUX9 453 aaPredicted RBP19.96■□□□□ 0.79
NR1H3-230ENST00000527949 RAD54L2Q9Y4B4 1467 aa19.95■□□□□ 0.78
NR1H3-230ENST00000527949 MAGI1Q96QZ7 1491 aaPredicted RBP19.94■□□□□ 0.78
NR1H3-230ENST00000527949 SNAPC4Q5SXM2 1469 aa19.92■□□□□ 0.78
NR1H3-230ENST00000527949 SYNJ1O43426 1573 aa19.92■□□□□ 0.78
NR1H3-230ENST00000527949 CLASP1Q7Z460 1538 aa19.91■□□□□ 0.78
NR1H3-230ENST00000527949 GRIN2BQ13224 1484 aa19.9■□□□□ 0.78
NR1H3-230ENST00000527949 CUX1P39880 1505 aa19.9■□□□□ 0.78
NR1H3-230ENST00000527949 FGD5Q6ZNL6 1462 aa19.89■□□□□ 0.77
NR1H3-230ENST00000527949 SYNJ2O15056 1496 aa19.86■□□□□ 0.77
NR1H3-230ENST00000527949 AEBP2Q6ZN18 517 aaPredicted RBP19.82■□□□□ 0.76
NR1H3-230ENST00000527949 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
NR1H3-230ENST00000527949 ABCA10Q8WWZ4 1543 aa19.73■□□□□ 0.75
NR1H3-230ENST00000527949 BIVM-ERCC5R4GMW8 1640 aa19.71■□□□□ 0.75
NR1H3-230ENST00000527949 TOP2BQ02880 1626 aa19.7■□□□□ 0.74
NR1H3-230ENST00000527949 WRNQ14191 1432 aaPredicted RBP eCLIP19.68■□□□□ 0.74
NR1H3-230ENST00000527949 ABCA5Q8WWZ7 1642 aa19.66■□□□□ 0.74
NR1H3-230ENST00000527949 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
NR1H3-230ENST00000527949 GRIN2AQ12879 1464 aa19.6■□□□□ 0.73
NR1H3-230ENST00000527949 NUP160Q12769 1436 aa19.57■□□□□ 0.72
NR1H3-230ENST00000527949 FHAD1B1AJZ9 1412 aa19.53■□□□□ 0.72
NR1H3-230ENST00000527949 ADAMTS12P58397 1594 aa19.51■□□□□ 0.71
NR1H3-230ENST00000527949 CEP170Q5SW79 1584 aa19.51■□□□□ 0.71
NR1H3-230ENST00000527949 ERICH3Q5RHP9 1530 aa19.51■□□□□ 0.71
NR1H3-230ENST00000527949 ERCC6L2Q5T890 1561 aa19.47■□□□□ 0.71
NR1H3-230ENST00000527949 SHROOM2Q13796 1616 aa19.47■□□□□ 0.71
NR1H3-230ENST00000527949 PRG4Q92954 1404 aaPredicted RBP19.4■□□□□ 0.7
NR1H3-230ENST00000527949 JPH4Q96JJ6 628 aa19.39■□□□□ 0.69
NR1H3-230ENST00000527949 NPM1P06748 294 aaKnown RBP eCLIP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms