RNA–Protein interactions for RNA: ENST00000527920.5

SSSCA1-205, Transcript of Sjogren syndrome/scleroderma autoantigen 1, human

TSL 3 BASIC

Gene SSSCA1, Length 806 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSSCA1-205	ENST00000527920	PCBP2	Q15366	365 aa	Known RBP eCLIP	30.99	■■■□□ 2.55	2e-13	■■□□□ 14.2
SSSCA1-205	ENST00000527920	RBFOX2	O43251	390 aa	Known RBP eCLIP	25.46	■■□□□ 1.67	2e-9	■■■□□ 17.9
SSSCA1-205	ENST00000527920	PABPC4	Q13310	644 aa	Known RBP eCLIP	39.84	■■■■□ 3.97	4e-8	■■■■□ 20.3
SSSCA1-205	ENST00000527920	UPF1	Q92900	1129 aa	Known RBP eCLIP	46.86	■■■■■ 5.09	1e-7	■■■■□ 23.9
SSSCA1-205	ENST00000527920	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	28.23	■■■□□ 2.11	3e-7	■■■■■ 26.8
SSSCA1-205	ENST00000527920	AKAP1	Q92667	903 aa	Known RBP eCLIP	29.09	■■■□□ 2.25	4e-7	■■■□□ 17
SSSCA1-205	ENST00000527920	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	39.22	■■■■□ 3.87	1e-6	■■■□□ 16.7
SSSCA1-205	ENST00000527920	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	35.05	■■■■□ 3.2	2e-6	■■■■■ 119.2
SSSCA1-205	ENST00000527920	EFTUD2	Q15029	972 aa	Known RBP eCLIP	31.19	■■■□□ 2.58	3e-6	■■■■■ 34.6
SSSCA1-205	ENST00000527920	NKRF	O15226	690 aa	Known RBP eCLIP	38.33	■■■■□ 3.73	3e-6	■□□□□ 8.1
SSSCA1-205	ENST00000527920	AQR	O60306	1485 aa	Known RBP eCLIP	58.61	■■■■■ 6.97	4e-6	■■■■■ 31
SSSCA1-205	ENST00000527920	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	37.94	■■■■□ 3.66	4e-6	■■■■□ 21.2
SSSCA1-205	ENST00000527920	HNRNPK	P61978	463 aa	Known RBP eCLIP	33.3	■■■□□ 2.92	6e-6	■■■□□ 16.3
SSSCA1-205	ENST00000527920	SF3B1	O75533	1304 aa	Known RBP eCLIP	36.22	■■■■□ 3.39	9e-6	■■■■■ 68.9

Retrieved 14 of 14 RNA–protein pairs in 7.1 ms