RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 NISCHQ9Y2I1 1504 aa36.03■■■■□ 3.36
SNRNP35-204ENST00000527158 CCDC180Q9P1Z9 1646 aa31.26■■■□□ 2.59
SNRNP35-204ENST00000527158 ZCCHC6Q5VYS8 1495 aaKnown RBP30.29■■■□□ 2.44
SNRNP35-204ENST00000527158 DCAF8L2P0C7V8 631 aa29.86■■■□□ 2.37
SNRNP35-204ENST00000527158 DCAF1Q9Y4B6 1507 aa29.76■■■□□ 2.36
SNRNP35-204ENST00000527158 SHROOM4Q9ULL8 1493 aa29.63■■■□□ 2.33
SNRNP35-204ENST00000527158 ABCC9O60706 1549 aa29.47■■■□□ 2.31
SNRNP35-204ENST00000527158 MYO15BQ96JP2 1530 aa29.33■■■□□ 2.29
SNRNP35-204ENST00000527158 NACADO15069 1562 aa29.12■■■□□ 2.25
SNRNP35-204ENST00000527158 SCRIBQ14160 1630 aa28.83■■■□□ 2.21
SNRNP35-204ENST00000527158 RB1CC1Q8TDY2 1594 aa28.82■■■□□ 2.2
SNRNP35-204ENST00000527158 SUPT5HO00267 1087 aaKnown RBP28.65■■■□□ 2.18
SNRNP35-204ENST00000527158 UNC13AQ9UPW8 1703 aa28.16■■■□□ 2.1
SNRNP35-204ENST00000527158 RSF1Q96T23 1441 aaPredicted RBP28.06■■■□□ 2.08
SNRNP35-204ENST00000527158 CECR2Q9BXF3 1484 aa27.99■■■□□ 2.07
SNRNP35-204ENST00000527158 BICRAQ9NZM4 1560 aa27.9■■■□□ 2.06
SNRNP35-204ENST00000527158 PABPN1Q86U42 306 aaKnown RBP eCLIP27.89■■■□□ 2.05
SNRNP35-204ENST00000527158 MROH2BQ7Z745 1585 aa27.84■■■□□ 2.05
SNRNP35-204ENST00000527158 BAZ1AQ9NRL2 1556 aaPredicted RBP27.81■■■□□ 2.04
SNRNP35-204ENST00000527158 SMARCA4P51532 1647 aa27.63■■■□□ 2.01
SNRNP35-204ENST00000527158 WIZO95785 1651 aa27.62■■■□□ 2.01
SNRNP35-204ENST00000527158 CHIC1Q5VXU3 224 aa27.49■■□□□ 1.99
SNRNP35-204ENST00000527158 TOP2AP11388 1531 aaKnown RBP27.34■■□□□ 1.97
SNRNP35-204ENST00000527158 PEG3Q9GZU2 1588 aa27.27■■□□□ 1.96
SNRNP35-204ENST00000527158 ATAD2BQ9ULI0 1458 aa27.16■■□□□ 1.94
SNRNP35-204ENST00000527158 SMARCA2P51531 1590 aa27.14■■□□□ 1.94
SNRNP35-204ENST00000527158 CCDC88BA6NC98 1476 aa27.1■■□□□ 1.93
SNRNP35-204ENST00000527158 EIF4G1Q04637 1599 aaKnown RBP27.08■■□□□ 1.93
SNRNP35-204ENST00000527158 BAZ1BQ9UIG0 1483 aaKnown RBP27.03■■□□□ 1.92
SNRNP35-204ENST00000527158 TRIM41Q8WV44 630 aa26.93■■□□□ 1.9
SNRNP35-204ENST00000527158 NCAPD3P42695 1498 aa26.89■■□□□ 1.89
SNRNP35-204ENST00000527158 HMGXB3Q12766 1538 aa26.84■■□□□ 1.89
SNRNP35-204ENST00000527158 CC2D2AQ9P2K1 1620 aa26.63■■□□□ 1.85
SNRNP35-204ENST00000527158 ABCC8Q09428 1581 aa26.58■■□□□ 1.85
SNRNP35-204ENST00000527158 LOC105371045A0A1W2PR82 267 aa26.48■■□□□ 1.83
SNRNP35-204ENST00000527158 FAM9AQ8IZU1 332 aaPredicted RBP26.45■■□□□ 1.82
SNRNP35-204ENST00000527158 WRNQ14191 1432 aaPredicted RBP eCLIP26.42■■□□□ 1.82
SNRNP35-204ENST00000527158 CFTRP13569 1480 aa26.35■■□□□ 1.81
SNRNP35-204ENST00000527158 CADPSQ9ULU8 1353 aa26.25■■□□□ 1.79
SNRNP35-204ENST00000527158 SYNJ1O43426 1573 aa26.25■■□□□ 1.79
SNRNP35-204ENST00000527158 EEA1Q15075 1411 aa26.16■■□□□ 1.78
SNRNP35-204ENST00000527158 SOGA1O94964 1423 aa26.16■■□□□ 1.78
SNRNP35-204ENST00000527158 PRDM2Q13029 1718 aa26.14■■□□□ 1.77
SNRNP35-204ENST00000527158 TOP2BQ02880 1626 aa26.13■■□□□ 1.77
SNRNP35-204ENST00000527158 EHMT2Q96KQ7 1210 aa26.09■■□□□ 1.77
SNRNP35-204ENST00000527158 BIVM-ERCC5R4GMW8 1640 aa26.07■■□□□ 1.76
SNRNP35-204ENST00000527158 CSRNP3Q8WYN3 585 aa26.05■■□□□ 1.76
SNRNP35-204ENST00000527158 RUSC2Q8N2Y8 1516 aa26.02■■□□□ 1.76
SNRNP35-204ENST00000527158 CUX1P39880 1505 aa26.01■■□□□ 1.76
SNRNP35-204ENST00000527158 FANCD2Q9BXW9 1451 aa25.94■■□□□ 1.74
SNRNP35-204ENST00000527158 DNAJC5BQ9UF47 199 aa25.92■■□□□ 1.74
SNRNP35-204ENST00000527158 LAMC3Q9Y6N6 1575 aa25.92■■□□□ 1.74
SNRNP35-204ENST00000527158 NESP48681 1621 aa25.91■■□□□ 1.74
SNRNP35-204ENST00000527158 GOLGA3Q08378 1498 aa25.8■■□□□ 1.72
SNRNP35-204ENST00000527158 CEP164Q9UPV0 1460 aa25.79■■□□□ 1.72
SNRNP35-204ENST00000527158 PDS5BQ9NTI5 1447 aa25.78■■□□□ 1.72
SNRNP35-204ENST00000527158 TNIKQ9UKE5 1360 aa25.78■■□□□ 1.72
SNRNP35-204ENST00000527158 UBTFP17480 764 aaKnown RBP25.77■■□□□ 1.72
SNRNP35-204ENST00000527158 KIF27Q86VH2 1401 aa25.75■■□□□ 1.71
SNRNP35-204ENST00000527158 KIF21BO75037 1637 aa25.75■■□□□ 1.71
SNRNP35-204ENST00000527158 FGD5Q6ZNL6 1462 aa25.72■■□□□ 1.71
SNRNP35-204ENST00000527158 DNMBPQ6XZF7 1577 aa25.72■■□□□ 1.71
SNRNP35-204ENST00000527158 TOPBP1Q92547 1522 aa25.67■■□□□ 1.7
SNRNP35-204ENST00000527158 CEP162Q5TB80 1403 aa25.64■■□□□ 1.7
SNRNP35-204ENST00000527158 CUX2O14529 1486 aa25.62■■□□□ 1.69
SNRNP35-204ENST00000527158 RAPGEF2Q9Y4G8 1499 aa25.6■■□□□ 1.69
SNRNP35-204ENST00000527158 PRXQ9BXM0 1461 aa25.59■■□□□ 1.69
SNRNP35-204ENST00000527158 URB2Q14146 1524 aaKnown RBP25.58■■□□□ 1.69
SNRNP35-204ENST00000527158 POLA1P09884 1462 aaPredicted RBP25.56■■□□□ 1.68
SNRNP35-204ENST00000527158 ERICH3Q5RHP9 1530 aa25.55■■□□□ 1.68
SNRNP35-204ENST00000527158 KIF21AQ7Z4S6 1674 aa25.55■■□□□ 1.68
SNRNP35-204ENST00000527158 PCGF6Q9BYE7 350 aa25.52■■□□□ 1.68
SNRNP35-204ENST00000527158 RAD54L2Q9Y4B4 1467 aa25.5■■□□□ 1.67
SNRNP35-204ENST00000527158 IGF1RP08069 1367 aa25.49■■□□□ 1.67
SNRNP35-204ENST00000527158 ABCA10Q8WWZ4 1543 aa25.49■■□□□ 1.67
SNRNP35-204ENST00000527158 TRIM26Q12899 539 aaPredicted RBP25.46■■□□□ 1.67
SNRNP35-204ENST00000527158 CLIP1P30622 1438 aa25.42■■□□□ 1.66
SNRNP35-204ENST00000527158 HRCP23327 699 aa25.41■■□□□ 1.66
SNRNP35-204ENST00000527158 MRC2Q9UBG0 1479 aa25.39■■□□□ 1.66
SNRNP35-204ENST00000527158 CARMIL1Q5VZK9 1371 aa25.38■■□□□ 1.65
SNRNP35-204ENST00000527158 WDR97A6NE52 1622 aa25.31■■□□□ 1.64
SNRNP35-204ENST00000527158 RANGAP1P46060 587 aaPredicted RBP25.3■■□□□ 1.64
SNRNP35-204ENST00000527158 ERCC6Q03468 1493 aa25.28■■□□□ 1.64
SNRNP35-204ENST00000527158 TDRD9Q8NDG6 1382 aaKnown RBP25.27■■□□□ 1.64
SNRNP35-204ENST00000527158 PPARGC1BQ86YN6 1023 aaKnown RBP25.24■■□□□ 1.63
SNRNP35-204ENST00000527158 GAPVD1Q14C86 1478 aa25.23■■□□□ 1.63
SNRNP35-204ENST00000527158 TARBP1Q13395 1621 aaKnown RBP25.23■■□□□ 1.63
SNRNP35-204ENST00000527158 ABCA5Q8WWZ7 1642 aa25.23■■□□□ 1.63
SNRNP35-204ENST00000527158 WDR62O43379 1518 aa25.22■■□□□ 1.63
SNRNP35-204ENST00000527158 CUL7Q14999 1698 aa25.22■■□□□ 1.63
SNRNP35-204ENST00000527158 VPS8Q8N3P4 1428 aa25.21■■□□□ 1.63
SNRNP35-204ENST00000527158 IFT140Q96RY7 1462 aa25.13■■□□□ 1.61
SNRNP35-204ENST00000527158 ARAP1Q96P48 1450 aa25.09■■□□□ 1.61
SNRNP35-204ENST00000527158 APLP2Q06481 763 aa25.08■■□□□ 1.61
SNRNP35-204ENST00000527158 THOC2Q8NI27 1593 aaKnown RBP25.07■■□□□ 1.6
SNRNP35-204ENST00000527158 ARHGAP35Q9NRY4 1499 aa25.06■■□□□ 1.6
SNRNP35-204ENST00000527158 AQRO60306 1485 aaKnown RBP eCLIP25.05■■□□□ 1.6
SNRNP35-204ENST00000527158 TTBK1Q5TCY1 1321 aaPredicted RBP25.01■■□□□ 1.59
SNRNP35-204ENST00000527158 PBRM1Q86U86 1689 aa25■■□□□ 1.59
SNRNP35-204ENST00000527158 GRIN2BQ13224 1484 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms