RNA–Protein interactions for RNA: ENST00000525141.1

SMCO4-202, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SMCO4, Length 889 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-202ENST00000525141 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
SMCO4-202ENST00000525141 CCDC180Q9P1Z9 1646 aa27.65■■■□□ 2.02
SMCO4-202ENST00000525141 ABCC9O60706 1549 aa27.57■■■□□ 2
SMCO4-202ENST00000525141 AEBP2Q6ZN18 517 aaPredicted RBP26.63■■□□□ 1.85
SMCO4-202ENST00000525141 RB1CC1Q8TDY2 1594 aa26.24■■□□□ 1.79
SMCO4-202ENST00000525141 DCAF8L2P0C7V8 631 aa26.23■■□□□ 1.79
SMCO4-202ENST00000525141 NACADO15069 1562 aa26.15■■□□□ 1.78
SMCO4-202ENST00000525141 DNAJC5BQ9UF47 199 aa25.88■■□□□ 1.73
SMCO4-202ENST00000525141 MYO15BQ96JP2 1530 aa25.88■■□□□ 1.73
SMCO4-202ENST00000525141 PABPN1Q86U42 306 aaKnown RBP eCLIP25.82■■□□□ 1.72
SMCO4-202ENST00000525141 ZCCHC6Q5VYS8 1495 aaKnown RBP25.76■■□□□ 1.71
SMCO4-202ENST00000525141 UNC13AQ9UPW8 1703 aa25.71■■□□□ 1.71
SMCO4-202ENST00000525141 DCAF1Q9Y4B6 1507 aa25.64■■□□□ 1.7
SMCO4-202ENST00000525141 BICRAQ9NZM4 1560 aa25.59■■□□□ 1.69
SMCO4-202ENST00000525141 SCRIBQ14160 1630 aa25.26■■□□□ 1.63
SMCO4-202ENST00000525141 CHIC1Q5VXU3 224 aa25.19■■□□□ 1.62
SMCO4-202ENST00000525141 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
SMCO4-202ENST00000525141 CC2D2AQ9P2K1 1620 aa24.88■■□□□ 1.57
SMCO4-202ENST00000525141 EIF4G1Q04637 1599 aaKnown RBP24.88■■□□□ 1.57
SMCO4-202ENST00000525141 CECR2Q9BXF3 1484 aa24.78■■□□□ 1.56
SMCO4-202ENST00000525141 NCAPD3P42695 1498 aa24.23■■□□□ 1.47
SMCO4-202ENST00000525141 ATAD2BQ9ULI0 1458 aa24.18■■□□□ 1.46
SMCO4-202ENST00000525141 SMARCA4P51532 1647 aa24.13■■□□□ 1.45
SMCO4-202ENST00000525141 BAZ1AQ9NRL2 1556 aaPredicted RBP24.03■■□□□ 1.44
SMCO4-202ENST00000525141 SMARCA2P51531 1590 aa24.02■■□□□ 1.44
SMCO4-202ENST00000525141 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
SMCO4-202ENST00000525141 HMGXB3Q12766 1538 aa23.94■■□□□ 1.42
SMCO4-202ENST00000525141 PEG3Q9GZU2 1588 aa23.91■■□□□ 1.42
SMCO4-202ENST00000525141 BAZ1BQ9UIG0 1483 aaKnown RBP23.87■■□□□ 1.41
SMCO4-202ENST00000525141 NESP48681 1621 aa23.79■■□□□ 1.4
SMCO4-202ENST00000525141 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
SMCO4-202ENST00000525141 WIZO95785 1651 aa23.68■■□□□ 1.38
SMCO4-202ENST00000525141 RSF1Q96T23 1441 aaPredicted RBP23.6■■□□□ 1.37
SMCO4-202ENST00000525141 CUX2O14529 1486 aa23.58■■□□□ 1.37
SMCO4-202ENST00000525141 LAMC3Q9Y6N6 1575 aa23.53■■□□□ 1.36
SMCO4-202ENST00000525141 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
SMCO4-202ENST00000525141 DNAJC5Q9H3Z4 198 aa23.49■■□□□ 1.35
SMCO4-202ENST00000525141 PDS5BQ9NTI5 1447 aa23.43■■□□□ 1.34
SMCO4-202ENST00000525141 KIF21AQ7Z4S6 1674 aa23.38■■□□□ 1.33
SMCO4-202ENST00000525141 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
SMCO4-202ENST00000525141 TOP2AP11388 1531 aaKnown RBP23.33■■□□□ 1.33
SMCO4-202ENST00000525141 CFTRP13569 1480 aa23.26■■□□□ 1.31
SMCO4-202ENST00000525141 MRC2Q9UBG0 1479 aa23.2■■□□□ 1.3
SMCO4-202ENST00000525141 FANCD2Q9BXW9 1451 aa23.18■■□□□ 1.3
SMCO4-202ENST00000525141 CCDC88BA6NC98 1476 aa23.17■■□□□ 1.3
SMCO4-202ENST00000525141 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
SMCO4-202ENST00000525141 WDR62O43379 1518 aa23.13■■□□□ 1.29
SMCO4-202ENST00000525141 URB2Q14146 1524 aaKnown RBP23.02■■□□□ 1.28
SMCO4-202ENST00000525141 PRDM2Q13029 1718 aa22.89■■□□□ 1.26
SMCO4-202ENST00000525141 TOPBP1Q92547 1522 aa22.78■■□□□ 1.24
SMCO4-202ENST00000525141 SENP3Q9H4L4 574 aaPredicted RBP22.78■■□□□ 1.24
SMCO4-202ENST00000525141 SUPT5HO00267 1087 aaKnown RBP22.76■■□□□ 1.23
SMCO4-202ENST00000525141 ZNF608Q9ULD9 1512 aaPredicted RBP22.72■■□□□ 1.23
SMCO4-202ENST00000525141 IFT140Q96RY7 1462 aa22.7■■□□□ 1.22
SMCO4-202ENST00000525141 ABCC8Q09428 1581 aa22.7■■□□□ 1.22
SMCO4-202ENST00000525141 OSCARQ8IYS5 282 aa22.68■■□□□ 1.22
SMCO4-202ENST00000525141 DNMBPQ6XZF7 1577 aa22.66■■□□□ 1.22
SMCO4-202ENST00000525141 TARBP1Q13395 1621 aaKnown RBP22.57■■□□□ 1.2
SMCO4-202ENST00000525141 AQRO60306 1485 aaKnown RBP eCLIP22.56■■□□□ 1.2
SMCO4-202ENST00000525141 POLA1P09884 1462 aaPredicted RBP22.56■■□□□ 1.2
SMCO4-202ENST00000525141 RAD54L2Q9Y4B4 1467 aa22.54■■□□□ 1.2
SMCO4-202ENST00000525141 SOGA1O94964 1423 aa22.51■■□□□ 1.19
SMCO4-202ENST00000525141 CUX1P39880 1505 aa22.49■■□□□ 1.19
SMCO4-202ENST00000525141 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
SMCO4-202ENST00000525141 EIF4G3O43432 1585 aaKnown RBP22.47■■□□□ 1.19
SMCO4-202ENST00000525141 TDRD9Q8NDG6 1382 aaKnown RBP22.47■■□□□ 1.19
SMCO4-202ENST00000525141 FGD5Q6ZNL6 1462 aa22.45■■□□□ 1.18
SMCO4-202ENST00000525141 PHF23Q9BUL5 403 aaPredicted RBP22.44■■□□□ 1.18
SMCO4-202ENST00000525141 FBLN2P98095 1184 aa22.34■■□□□ 1.17
SMCO4-202ENST00000525141 CHD1O14646 1710 aa22.28■■□□□ 1.16
SMCO4-202ENST00000525141 RIMBP3CA6NJZ7 1639 aa22.26■■□□□ 1.15
SMCO4-202ENST00000525141 RIMBP3BA6NNM3 1639 aa22.26■■□□□ 1.15
SMCO4-202ENST00000525141 RIMBP3Q9UFD9 1639 aa22.26■■□□□ 1.15
SMCO4-202ENST00000525141 SNAPC4Q5SXM2 1469 aa22.24■■□□□ 1.15
SMCO4-202ENST00000525141 WDR97A6NE52 1622 aa22.23■■□□□ 1.15
SMCO4-202ENST00000525141 GRIN2BQ13224 1484 aa22.22■■□□□ 1.15
SMCO4-202ENST00000525141 ARHGEF11O15085 1522 aa22.21■■□□□ 1.15
SMCO4-202ENST00000525141 CHMP7Q8WUX9 453 aaPredicted RBP22.21■■□□□ 1.15
SMCO4-202ENST00000525141 ABCA10Q8WWZ4 1543 aa22.21■■□□□ 1.15
SMCO4-202ENST00000525141 GAPVD1Q14C86 1478 aa22.19■■□□□ 1.14
SMCO4-202ENST00000525141 WRNQ14191 1432 aaPredicted RBP eCLIP22.18■■□□□ 1.14
SMCO4-202ENST00000525141 MAGI1Q96QZ7 1491 aaPredicted RBP22.16■■□□□ 1.14
SMCO4-202ENST00000525141 SYNJ1O43426 1573 aa22.16■■□□□ 1.14
SMCO4-202ENST00000525141 CYB5RLQ6IPT4 315 aa22.15■■□□□ 1.14
SMCO4-202ENST00000525141 TOP2BQ02880 1626 aa22.14■■□□□ 1.14
SMCO4-202ENST00000525141 BIVM-ERCC5R4GMW8 1640 aa22.13■■□□□ 1.13
SMCO4-202ENST00000525141 SYNJ2O15056 1496 aa22.11■■□□□ 1.13
SMCO4-202ENST00000525141 ABCA5Q8WWZ7 1642 aa22.11■■□□□ 1.13
SMCO4-202ENST00000525141 PBRM1Q86U86 1689 aa22.08■■□□□ 1.13
SMCO4-202ENST00000525141 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
SMCO4-202ENST00000525141 ARAP1Q96P48 1450 aa22.04■■□□□ 1.12
SMCO4-202ENST00000525141 GRIN2AQ12879 1464 aa21.93■■□□□ 1.1
SMCO4-202ENST00000525141 FHAD1B1AJZ9 1412 aa21.92■■□□□ 1.1
SMCO4-202ENST00000525141 ADAMTS12P58397 1594 aa21.9■■□□□ 1.1
SMCO4-202ENST00000525141 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
SMCO4-202ENST00000525141 NUP160Q12769 1436 aa21.89■■□□□ 1.09
SMCO4-202ENST00000525141 CEP170Q5SW79 1584 aa21.86■■□□□ 1.09
SMCO4-202ENST00000525141 IGF1RP08069 1367 aa21.83■■□□□ 1.08
SMCO4-202ENST00000525141 ERCC6L2Q5T890 1561 aa21.82■■□□□ 1.08
SMCO4-202ENST00000525141 TRHP20396 242 aaPredicted RBP21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms