RNA–Protein interactions for RNA: ENST00000523068.1

PVT1-216, Transcript of Pvt1 oncogene, humanhuman

TSL 5 BASIC

Gene PVT1, Length 844 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-216ENST00000523068 NISCHQ9Y2I1 1504 aa26.92■■□□□ 1.9
PVT1-216ENST00000523068 CCDC180Q9P1Z9 1646 aa24.14■■□□□ 1.46
PVT1-216ENST00000523068 ABCC9O60706 1549 aa23.79■■□□□ 1.4
PVT1-216ENST00000523068 RB1CC1Q8TDY2 1594 aa22.84■■□□□ 1.25
PVT1-216ENST00000523068 NACADO15069 1562 aa22.74■■□□□ 1.23
PVT1-216ENST00000523068 DCAF8L2P0C7V8 631 aa22.59■■□□□ 1.21
PVT1-216ENST00000523068 MYO15BQ96JP2 1530 aa22.5■■□□□ 1.19
PVT1-216ENST00000523068 ZCCHC6Q5VYS8 1495 aaKnown RBP22.35■■□□□ 1.17
PVT1-216ENST00000523068 UNC13AQ9UPW8 1703 aa22.35■■□□□ 1.17
PVT1-216ENST00000523068 DCAF1Q9Y4B6 1507 aa22.29■■□□□ 1.16
PVT1-216ENST00000523068 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
PVT1-216ENST00000523068 BICRAQ9NZM4 1560 aa22.11■■□□□ 1.13
PVT1-216ENST00000523068 DNAJC5BQ9UF47 199 aa22.04■■□□□ 1.12
PVT1-216ENST00000523068 SCRIBQ14160 1630 aa21.94■■□□□ 1.1
PVT1-216ENST00000523068 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
PVT1-216ENST00000523068 EIF4G1Q04637 1599 aaKnown RBP21.57■■□□□ 1.04
PVT1-216ENST00000523068 CC2D2AQ9P2K1 1620 aa21.55■■□□□ 1.04
PVT1-216ENST00000523068 CECR2Q9BXF3 1484 aa21.44■■□□□ 1.02
PVT1-216ENST00000523068 SMARCA4P51532 1647 aa20.97■□□□□ 0.95
PVT1-216ENST00000523068 NCAPD3P42695 1498 aa20.94■□□□□ 0.94
PVT1-216ENST00000523068 SMARCA2P51531 1590 aa20.91■□□□□ 0.94
PVT1-216ENST00000523068 BAZ1AQ9NRL2 1556 aaPredicted RBP20.91■□□□□ 0.94
PVT1-216ENST00000523068 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.94
PVT1-216ENST00000523068 HMGXB3Q12766 1538 aa20.84■□□□□ 0.93
PVT1-216ENST00000523068 PEG3Q9GZU2 1588 aa20.77■□□□□ 0.92
PVT1-216ENST00000523068 BAZ1BQ9UIG0 1483 aaKnown RBP20.74■□□□□ 0.91
PVT1-216ENST00000523068 MROH2BQ7Z745 1585 aa20.72■□□□□ 0.91
PVT1-216ENST00000523068 ERCC6Q03468 1493 aa20.58■□□□□ 0.89
PVT1-216ENST00000523068 WIZO95785 1651 aa20.52■□□□□ 0.88
PVT1-216ENST00000523068 NESP48681 1621 aa20.5■□□□□ 0.87
PVT1-216ENST00000523068 LAMC3Q9Y6N6 1575 aa20.49■□□□□ 0.87
PVT1-216ENST00000523068 CUX2O14529 1486 aa20.47■□□□□ 0.87
PVT1-216ENST00000523068 RSF1Q96T23 1441 aaPredicted RBP20.36■□□□□ 0.85
PVT1-216ENST00000523068 KIF21AQ7Z4S6 1674 aa20.33■□□□□ 0.85
PVT1-216ENST00000523068 PDS5BQ9NTI5 1447 aa20.33■□□□□ 0.84
PVT1-216ENST00000523068 CADPSQ9ULU8 1353 aa20.31■□□□□ 0.84
PVT1-216ENST00000523068 THOC2Q8NI27 1593 aaKnown RBP20.3■□□□□ 0.84
PVT1-216ENST00000523068 TOP2AP11388 1531 aaKnown RBP20.28■□□□□ 0.84
PVT1-216ENST00000523068 CFTRP13569 1480 aa20.13■□□□□ 0.81
PVT1-216ENST00000523068 DNAJC5Q9H3Z4 198 aa20.13■□□□□ 0.81
PVT1-216ENST00000523068 MRC2Q9UBG0 1479 aa20.12■□□□□ 0.81
PVT1-216ENST00000523068 CEP164Q9UPV0 1460 aa20.11■□□□□ 0.81
PVT1-216ENST00000523068 WDR62O43379 1518 aa20.08■□□□□ 0.81
PVT1-216ENST00000523068 PRDM2Q13029 1718 aa20.08■□□□□ 0.81
PVT1-216ENST00000523068 FANCD2Q9BXW9 1451 aa20.08■□□□□ 0.81
PVT1-216ENST00000523068 CCDC88BA6NC98 1476 aa20.01■□□□□ 0.79
PVT1-216ENST00000523068 URB2Q14146 1524 aaKnown RBP19.88■□□□□ 0.77
PVT1-216ENST00000523068 ABCC8Q09428 1581 aa19.76■□□□□ 0.75
PVT1-216ENST00000523068 TOPBP1Q92547 1522 aa19.73■□□□□ 0.75
PVT1-216ENST00000523068 DNMBPQ6XZF7 1577 aa19.71■□□□□ 0.75
PVT1-216ENST00000523068 IFT140Q96RY7 1462 aa19.68■□□□□ 0.74
PVT1-216ENST00000523068 SUPT5HO00267 1087 aaKnown RBP19.62■□□□□ 0.73
PVT1-216ENST00000523068 AEBP2Q6ZN18 517 aaPredicted RBP19.61■□□□□ 0.73
PVT1-216ENST00000523068 ZNF608Q9ULD9 1512 aaPredicted RBP19.58■□□□□ 0.73
PVT1-216ENST00000523068 TARBP1Q13395 1621 aaKnown RBP19.55■□□□□ 0.72
PVT1-216ENST00000523068 EIF4G3O43432 1585 aaKnown RBP19.55■□□□□ 0.72
PVT1-216ENST00000523068 OSCARQ8IYS5 282 aa19.55■□□□□ 0.72
PVT1-216ENST00000523068 POLA1P09884 1462 aaPredicted RBP19.54■□□□□ 0.72
PVT1-216ENST00000523068 CUX1P39880 1505 aa19.46■□□□□ 0.71
PVT1-216ENST00000523068 SOGA1O94964 1423 aa19.45■□□□□ 0.7
PVT1-216ENST00000523068 FGD5Q6ZNL6 1462 aa19.45■□□□□ 0.7
PVT1-216ENST00000523068 WDR97A6NE52 1622 aa19.44■□□□□ 0.7
PVT1-216ENST00000523068 AQRO60306 1485 aaKnown RBP eCLIP19.44■□□□□ 0.7
PVT1-216ENST00000523068 RAD54L2Q9Y4B4 1467 aa19.43■□□□□ 0.7
PVT1-216ENST00000523068 CHD1O14646 1710 aa19.39■□□□□ 0.7
PVT1-216ENST00000523068 TDRD9Q8NDG6 1382 aaKnown RBP19.35■□□□□ 0.69
PVT1-216ENST00000523068 TRIM41Q8WV44 630 aa19.34■□□□□ 0.69
PVT1-216ENST00000523068 RIMBP3CA6NJZ7 1639 aa19.29■□□□□ 0.68
PVT1-216ENST00000523068 RIMBP3BA6NNM3 1639 aa19.29■□□□□ 0.68
PVT1-216ENST00000523068 RIMBP3Q9UFD9 1639 aa19.29■□□□□ 0.68
PVT1-216ENST00000523068 PBRM1Q86U86 1689 aa19.28■□□□□ 0.68
PVT1-216ENST00000523068 FBLN2P98095 1184 aa19.28■□□□□ 0.68
PVT1-216ENST00000523068 BIVM-ERCC5R4GMW8 1640 aa19.28■□□□□ 0.68
PVT1-216ENST00000523068 GRIN2BQ13224 1484 aa19.28■□□□□ 0.68
PVT1-216ENST00000523068 SNAPC4Q5SXM2 1469 aa19.28■□□□□ 0.68
PVT1-216ENST00000523068 MAGI1Q96QZ7 1491 aaPredicted RBP19.27■□□□□ 0.67
PVT1-216ENST00000523068 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
PVT1-216ENST00000523068 ABCA10Q8WWZ4 1543 aa19.25■□□□□ 0.67
PVT1-216ENST00000523068 GAPVD1Q14C86 1478 aa19.24■□□□□ 0.67
PVT1-216ENST00000523068 ARHGEF11O15085 1522 aa19.24■□□□□ 0.67
PVT1-216ENST00000523068 WRNQ14191 1432 aaPredicted RBP eCLIP19.24■□□□□ 0.67
PVT1-216ENST00000523068 ABCA5Q8WWZ7 1642 aa19.22■□□□□ 0.67
PVT1-216ENST00000523068 SYNJ1O43426 1573 aa19.21■□□□□ 0.67
PVT1-216ENST00000523068 CHMP7Q8WUX9 453 aaPredicted RBP19.2■□□□□ 0.66
PVT1-216ENST00000523068 SYNJ2O15056 1496 aa19.19■□□□□ 0.66
PVT1-216ENST00000523068 CHIC1Q5VXU3 224 aa19.13■□□□□ 0.65
PVT1-216ENST00000523068 CLASP1Q7Z460 1538 aa19.13■□□□□ 0.65
PVT1-216ENST00000523068 ADAMTS12P58397 1594 aa19.06■□□□□ 0.64
PVT1-216ENST00000523068 CYB5RLQ6IPT4 315 aa19.05■□□□□ 0.64
PVT1-216ENST00000523068 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
PVT1-216ENST00000523068 ARAP1Q96P48 1450 aa19.03■□□□□ 0.64
PVT1-216ENST00000523068 GRIN2AQ12879 1464 aa19.03■□□□□ 0.64
PVT1-216ENST00000523068 FHAD1B1AJZ9 1412 aa19■□□□□ 0.63
PVT1-216ENST00000523068 NUP160Q12769 1436 aa18.94■□□□□ 0.62
PVT1-216ENST00000523068 CEP170Q5SW79 1584 aa18.93■□□□□ 0.62
PVT1-216ENST00000523068 SHROOM2Q13796 1616 aa18.87■□□□□ 0.61
PVT1-216ENST00000523068 KIF27Q86VH2 1401 aa18.87■□□□□ 0.61
PVT1-216ENST00000523068 CUL7Q14999 1698 aa18.85■□□□□ 0.61
PVT1-216ENST00000523068 ERCC6L2Q5T890 1561 aa18.81■□□□□ 0.6
PVT1-216ENST00000523068 TRHP20396 242 aaPredicted RBP18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms