RNA–Protein interactions for RNA: ENST00000522911.5

SDC2-207, Transcript of syndecan 2, humanhuman

TSL 3 BASIC

Gene SDC2, Length 677 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-207ENST00000522911 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
SDC2-207ENST00000522911 CCDC180Q9P1Z9 1646 aa21.41■■□□□ 1.02
SDC2-207ENST00000522911 ABCC9O60706 1549 aa21.31■■□□□ 1
SDC2-207ENST00000522911 RB1CC1Q8TDY2 1594 aa20.38■□□□□ 0.85
SDC2-207ENST00000522911 NACADO15069 1562 aa20.27■□□□□ 0.84
SDC2-207ENST00000522911 MYO15BQ96JP2 1530 aa20.09■□□□□ 0.81
SDC2-207ENST00000522911 DNAJC5BQ9UF47 199 aa20.07■□□□□ 0.8
SDC2-207ENST00000522911 DCAF8L2P0C7V8 631 aa19.88■□□□□ 0.77
SDC2-207ENST00000522911 UNC13AQ9UPW8 1703 aa19.82■□□□□ 0.76
SDC2-207ENST00000522911 PABPN1Q86U42 306 aaKnown RBP eCLIP19.8■□□□□ 0.76
SDC2-207ENST00000522911 BICRAQ9NZM4 1560 aa19.78■□□□□ 0.76
SDC2-207ENST00000522911 DCAF1Q9Y4B6 1507 aa19.78■□□□□ 0.76
SDC2-207ENST00000522911 ZCCHC6Q5VYS8 1495 aaKnown RBP19.74■□□□□ 0.75
SDC2-207ENST00000522911 SHROOM4Q9ULL8 1493 aa19.67■□□□□ 0.74
SDC2-207ENST00000522911 SCRIBQ14160 1630 aa19.36■□□□□ 0.69
SDC2-207ENST00000522911 CC2D2AQ9P2K1 1620 aa19.3■□□□□ 0.68
SDC2-207ENST00000522911 EIF4G1Q04637 1599 aaKnown RBP19.28■□□□□ 0.68
SDC2-207ENST00000522911 CECR2Q9BXF3 1484 aa19.27■□□□□ 0.67
SDC2-207ENST00000522911 NCAPD3P42695 1498 aa18.73■□□□□ 0.59
SDC2-207ENST00000522911 AEBP2Q6ZN18 517 aaPredicted RBP18.73■□□□□ 0.59
SDC2-207ENST00000522911 ATAD2BQ9ULI0 1458 aa18.61■□□□□ 0.57
SDC2-207ENST00000522911 SMARCA2P51531 1590 aa18.59■□□□□ 0.57
SDC2-207ENST00000522911 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
SDC2-207ENST00000522911 DNAJC5Q9H3Z4 198 aa18.55■□□□□ 0.56
SDC2-207ENST00000522911 SMARCA4P51532 1647 aa18.55■□□□□ 0.56
SDC2-207ENST00000522911 CUX2O14529 1486 aa18.54■□□□□ 0.56
SDC2-207ENST00000522911 BAZ1AQ9NRL2 1556 aaPredicted RBP18.49■□□□□ 0.55
SDC2-207ENST00000522911 PEG3Q9GZU2 1588 aa18.48■□□□□ 0.55
SDC2-207ENST00000522911 ERCC6Q03468 1493 aa18.43■□□□□ 0.54
SDC2-207ENST00000522911 BAZ1BQ9UIG0 1483 aaKnown RBP18.39■□□□□ 0.54
SDC2-207ENST00000522911 NESP48681 1621 aa18.3■□□□□ 0.52
SDC2-207ENST00000522911 MROH2BQ7Z745 1585 aa18.29■□□□□ 0.52
SDC2-207ENST00000522911 LAMC3Q9Y6N6 1575 aa18.29■□□□□ 0.52
SDC2-207ENST00000522911 THOC2Q8NI27 1593 aaKnown RBP18.2■□□□□ 0.5
SDC2-207ENST00000522911 PDS5BQ9NTI5 1447 aa18.18■□□□□ 0.5
SDC2-207ENST00000522911 CADPSQ9ULU8 1353 aa18.12■□□□□ 0.49
SDC2-207ENST00000522911 KIF21AQ7Z4S6 1674 aa18.06■□□□□ 0.48
SDC2-207ENST00000522911 WIZO95785 1651 aa18.01■□□□□ 0.47
SDC2-207ENST00000522911 MRC2Q9UBG0 1479 aa18■□□□□ 0.47
SDC2-207ENST00000522911 WDR62O43379 1518 aa17.98■□□□□ 0.47
SDC2-207ENST00000522911 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
SDC2-207ENST00000522911 CFTRP13569 1480 aa17.93■□□□□ 0.46
SDC2-207ENST00000522911 CEP164Q9UPV0 1460 aa17.9■□□□□ 0.46
SDC2-207ENST00000522911 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
SDC2-207ENST00000522911 FANCD2Q9BXW9 1451 aa17.87■□□□□ 0.45
SDC2-207ENST00000522911 URB2Q14146 1524 aaKnown RBP17.72■□□□□ 0.43
SDC2-207ENST00000522911 PRDM2Q13029 1718 aa17.66■□□□□ 0.42
SDC2-207ENST00000522911 CHIC1Q5VXU3 224 aa17.65■□□□□ 0.42
SDC2-207ENST00000522911 CCDC88BA6NC98 1476 aa17.64■□□□□ 0.41
SDC2-207ENST00000522911 OSCARQ8IYS5 282 aa17.62■□□□□ 0.41
SDC2-207ENST00000522911 IFT140Q96RY7 1462 aa17.57■□□□□ 0.4
SDC2-207ENST00000522911 ABCC8Q09428 1581 aa17.57■□□□□ 0.4
SDC2-207ENST00000522911 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
SDC2-207ENST00000522911 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
SDC2-207ENST00000522911 DNMBPQ6XZF7 1577 aa17.48■□□□□ 0.39
SDC2-207ENST00000522911 ZNF608Q9ULD9 1512 aaPredicted RBP17.47■□□□□ 0.39
SDC2-207ENST00000522911 TARBP1Q13395 1621 aaKnown RBP17.39■□□□□ 0.38
SDC2-207ENST00000522911 EIF4G3O43432 1585 aaKnown RBP17.39■□□□□ 0.37
SDC2-207ENST00000522911 POLA1P09884 1462 aaPredicted RBP17.36■□□□□ 0.37
SDC2-207ENST00000522911 RIMBP3CA6NJZ7 1639 aa17.35■□□□□ 0.37
SDC2-207ENST00000522911 RIMBP3BA6NNM3 1639 aa17.35■□□□□ 0.37
SDC2-207ENST00000522911 RIMBP3Q9UFD9 1639 aa17.35■□□□□ 0.37
SDC2-207ENST00000522911 ARHGEF11O15085 1522 aa17.33■□□□□ 0.37
SDC2-207ENST00000522911 WDR97A6NE52 1622 aa17.31■□□□□ 0.36
SDC2-207ENST00000522911 AQRO60306 1485 aaKnown RBP eCLIP17.31■□□□□ 0.362e-6■■■■□ 24.3
SDC2-207ENST00000522911 SOGA1O94964 1423 aa17.26■□□□□ 0.35
SDC2-207ENST00000522911 RAD54L2Q9Y4B4 1467 aa17.22■□□□□ 0.35
SDC2-207ENST00000522911 CHD1O14646 1710 aa17.21■□□□□ 0.35
SDC2-207ENST00000522911 FGD5Q6ZNL6 1462 aa17.2■□□□□ 0.34
SDC2-207ENST00000522911 CUX1P39880 1505 aa17.2■□□□□ 0.34
SDC2-207ENST00000522911 TDRD9Q8NDG6 1382 aaKnown RBP17.19■□□□□ 0.34
SDC2-207ENST00000522911 MAGI1Q96QZ7 1491 aaPredicted RBP17.18■□□□□ 0.34
SDC2-207ENST00000522911 ARAP1Q96P48 1450 aa17.16■□□□□ 0.34
SDC2-207ENST00000522911 GRIN2BQ13224 1484 aa17.15■□□□□ 0.34
SDC2-207ENST00000522911 SNAPC4Q5SXM2 1469 aa17.14■□□□□ 0.33
SDC2-207ENST00000522911 CLASP1Q7Z460 1538 aa17.13■□□□□ 0.33
SDC2-207ENST00000522911 CYB5RLQ6IPT4 315 aa17.13■□□□□ 0.33
SDC2-207ENST00000522911 FBLN2P98095 1184 aa17.12■□□□□ 0.33
SDC2-207ENST00000522911 SYNJ2O15056 1496 aa17.11■□□□□ 0.33
SDC2-207ENST00000522911 SYNJ1O43426 1573 aa17.09■□□□□ 0.33
SDC2-207ENST00000522911 ABCA10Q8WWZ4 1543 aa17.08■□□□□ 0.32
SDC2-207ENST00000522911 CHMP7Q8WUX9 453 aaPredicted RBP17.07■□□□□ 0.32
SDC2-207ENST00000522911 GAPVD1Q14C86 1478 aa17.05■□□□□ 0.32
SDC2-207ENST00000522911 ABCA5Q8WWZ7 1642 aa17.02■□□□□ 0.31
SDC2-207ENST00000522911 PBRM1Q86U86 1689 aa16.99■□□□□ 0.31
SDC2-207ENST00000522911 WRNQ14191 1432 aaPredicted RBP eCLIP16.98■□□□□ 0.31
SDC2-207ENST00000522911 TOP2BQ02880 1626 aa16.93■□□□□ 0.3
SDC2-207ENST00000522911 BIVM-ERCC5R4GMW8 1640 aa16.92■□□□□ 0.3
SDC2-207ENST00000522911 TRHP20396 242 aaPredicted RBP16.92■□□□□ 0.3
SDC2-207ENST00000522911 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
SDC2-207ENST00000522911 GRIN2AQ12879 1464 aa16.91■□□□□ 0.3
SDC2-207ENST00000522911 NUP160Q12769 1436 aa16.9■□□□□ 0.3
SDC2-207ENST00000522911 ADAMTS12P58397 1594 aa16.88■□□□□ 0.29
SDC2-207ENST00000522911 ERICH3Q5RHP9 1530 aa16.87■□□□□ 0.29
SDC2-207ENST00000522911 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
SDC2-207ENST00000522911 SHROOM2Q13796 1616 aa16.82■□□□□ 0.28
SDC2-207ENST00000522911 CEP170Q5SW79 1584 aa16.82■□□□□ 0.28
SDC2-207ENST00000522911 ERCC6L2Q5T890 1561 aa16.76■□□□□ 0.27
SDC2-207ENST00000522911 JPH4Q96JJ6 628 aa16.67■□□□□ 0.26
SDC2-207ENST00000522911 PRG4Q92954 1404 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms