RNA–Protein interactions for RNA: ENST00000522466.1

PDGFRB-210, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 296 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-210ENST00000522466 NISCHQ9Y2I1 1504 aa20.53■□□□□ 0.88
PDGFRB-210ENST00000522466 ABCC9O60706 1549 aa19.08■□□□□ 0.64
PDGFRB-210ENST00000522466 AEBP2Q6ZN18 517 aaPredicted RBP18.94■□□□□ 0.62
PDGFRB-210ENST00000522466 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
PDGFRB-210ENST00000522466 DNAJC5BQ9UF47 199 aa18.26■□□□□ 0.51
PDGFRB-210ENST00000522466 RB1CC1Q8TDY2 1594 aa17.88■□□□□ 0.45
PDGFRB-210ENST00000522466 PABPN1Q86U42 306 aaKnown RBP eCLIP17.74■□□□□ 0.43
PDGFRB-210ENST00000522466 DCAF8L2P0C7V8 631 aa17.68■□□□□ 0.42
PDGFRB-210ENST00000522466 NACADO15069 1562 aa17.64■□□□□ 0.41
PDGFRB-210ENST00000522466 UNC13AQ9UPW8 1703 aa17.57■□□□□ 0.4
PDGFRB-210ENST00000522466 CHIC1Q5VXU3 224 aa17.53■□□□□ 0.4
PDGFRB-210ENST00000522466 BICRAQ9NZM4 1560 aa17.41■□□□□ 0.38
PDGFRB-210ENST00000522466 CECR2Q9BXF3 1484 aa17.18■□□□□ 0.34
PDGFRB-210ENST00000522466 MYO15BQ96JP2 1530 aa17.17■□□□□ 0.34
PDGFRB-210ENST00000522466 CC2D2AQ9P2K1 1620 aa17.17■□□□□ 0.34
PDGFRB-210ENST00000522466 SCRIBQ14160 1630 aa17.02■□□□□ 0.31
PDGFRB-210ENST00000522466 EIF4G1Q04637 1599 aaKnown RBP17.01■□□□□ 0.31
PDGFRB-210ENST00000522466 SHROOM4Q9ULL8 1493 aa16.98■□□□□ 0.31
PDGFRB-210ENST00000522466 DNAJC5Q9H3Z4 198 aa16.97■□□□□ 0.31
PDGFRB-210ENST00000522466 ZCCHC6Q5VYS8 1495 aaKnown RBP16.92■□□□□ 0.3
PDGFRB-210ENST00000522466 DCAF1Q9Y4B6 1507 aa16.84■□□□□ 0.29
PDGFRB-210ENST00000522466 CUX2O14529 1486 aa16.48■□□□□ 0.23
PDGFRB-210ENST00000522466 ERCC6Q03468 1493 aa16.48■□□□□ 0.23
PDGFRB-210ENST00000522466 NCAPD3P42695 1498 aa16.29■□□□□ 0.2
PDGFRB-210ENST00000522466 NESP48681 1621 aa16.28■□□□□ 0.2
PDGFRB-210ENST00000522466 ATAD2BQ9ULI0 1458 aa16.22■□□□□ 0.19
PDGFRB-210ENST00000522466 TRIM41Q8WV44 630 aa16.2■□□□□ 0.18
PDGFRB-210ENST00000522466 THOC2Q8NI27 1593 aaKnown RBP16.13■□□□□ 0.17
PDGFRB-210ENST00000522466 SMARCA2P51531 1590 aa16.13■□□□□ 0.17
PDGFRB-210ENST00000522466 SMARCA4P51532 1647 aa16.12■□□□□ 0.17
PDGFRB-210ENST00000522466 HMGXB3Q12766 1538 aa16.12■□□□□ 0.17
PDGFRB-210ENST00000522466 BAZ1BQ9UIG0 1483 aaKnown RBP16.06■□□□□ 0.16
PDGFRB-210ENST00000522466 SENP3Q9H4L4 574 aaPredicted RBP16.06■□□□□ 0.16
PDGFRB-210ENST00000522466 KIF21AQ7Z4S6 1674 aa16.05■□□□□ 0.16
PDGFRB-210ENST00000522466 LAMC3Q9Y6N6 1575 aa16■□□□□ 0.15
PDGFRB-210ENST00000522466 BAZ1AQ9NRL2 1556 aaPredicted RBP15.94■□□□□ 0.14
PDGFRB-210ENST00000522466 PDS5BQ9NTI5 1447 aa15.93■□□□□ 0.14
PDGFRB-210ENST00000522466 PEG3Q9GZU2 1588 aa15.88■□□□□ 0.13
PDGFRB-210ENST00000522466 MROH2BQ7Z745 1585 aa15.87■□□□□ 0.13
PDGFRB-210ENST00000522466 PHF23Q9BUL5 403 aaPredicted RBP15.84■□□□□ 0.13
PDGFRB-210ENST00000522466 MRC2Q9UBG0 1479 aa15.84■□□□□ 0.13
PDGFRB-210ENST00000522466 CADPSQ9ULU8 1353 aa15.8■□□□□ 0.12
PDGFRB-210ENST00000522466 WDR62O43379 1518 aa15.78■□□□□ 0.12
PDGFRB-210ENST00000522466 OSCARQ8IYS5 282 aa15.73■□□□□ 0.11
PDGFRB-210ENST00000522466 CEP164Q9UPV0 1460 aa15.7■□□□□ 0.1
PDGFRB-210ENST00000522466 WIZO95785 1651 aa15.7■□□□□ 0.1
PDGFRB-210ENST00000522466 FANCD2Q9BXW9 1451 aa15.65■□□□□ 0.1
PDGFRB-210ENST00000522466 RIMBP3CA6NJZ7 1639 aa15.6■□□□□ 0.09
PDGFRB-210ENST00000522466 RIMBP3BA6NNM3 1639 aa15.6■□□□□ 0.09
PDGFRB-210ENST00000522466 RIMBP3Q9UFD9 1639 aa15.6■□□□□ 0.09
PDGFRB-210ENST00000522466 URB2Q14146 1524 aaKnown RBP15.57■□□□□ 0.08
PDGFRB-210ENST00000522466 CFTRP13569 1480 aa15.52■□□□□ 0.08
PDGFRB-210ENST00000522466 ARHGEF11O15085 1522 aa15.48■□□□□ 0.07
PDGFRB-210ENST00000522466 ZNF608Q9ULD9 1512 aaPredicted RBP15.46■□□□□ 0.07
PDGFRB-210ENST00000522466 CYB5RLQ6IPT4 315 aa15.45■□□□□ 0.06
PDGFRB-210ENST00000522466 TRHP20396 242 aaPredicted RBP15.44■□□□□ 0.06
PDGFRB-210ENST00000522466 TOP2AP11388 1531 aaKnown RBP15.39■□□□□ 0.05
PDGFRB-210ENST00000522466 PRDM2Q13029 1718 aa15.38■□□□□ 0.05
PDGFRB-210ENST00000522466 IFT140Q96RY7 1462 aa15.38■□□□□ 0.05
PDGFRB-210ENST00000522466 RSF1Q96T23 1441 aaPredicted RBP15.36■□□□□ 0.05
PDGFRB-210ENST00000522466 CHD1O14646 1710 aa15.34■□□□□ 0.05
PDGFRB-210ENST00000522466 EIF4G3O43432 1585 aaKnown RBP15.33■□□□□ 0.05
PDGFRB-210ENST00000522466 ARAP1Q96P48 1450 aa15.32■□□□□ 0.04
PDGFRB-210ENST00000522466 TOPBP1Q92547 1522 aa15.32■□□□□ 0.04
PDGFRB-210ENST00000522466 FBLN2P98095 1184 aa15.31■□□□□ 0.04
PDGFRB-210ENST00000522466 AQRO60306 1485 aaKnown RBP eCLIP15.27■□□□□ 0.04
PDGFRB-210ENST00000522466 CCDC88BA6NC98 1476 aa15.26■□□□□ 0.03
PDGFRB-210ENST00000522466 DNMBPQ6XZF7 1577 aa15.21■□□□□ 0.03
PDGFRB-210ENST00000522466 TARBP1Q13395 1621 aaKnown RBP15.2■□□□□ 0.02
PDGFRB-210ENST00000522466 ABCC8Q09428 1581 aa15.18■□□□□ 0.02
PDGFRB-210ENST00000522466 RAD54L2Q9Y4B4 1467 aa15.14■□□□□ 0.01
PDGFRB-210ENST00000522466 POLA1P09884 1462 aaPredicted RBP15.13■□□□□ 0.01
PDGFRB-210ENST00000522466 TDRD9Q8NDG6 1382 aaKnown RBP15.12■□□□□ 0.01
PDGFRB-210ENST00000522466 FOXD1Q16676 465 aa15.1■□□□□ 0.01
PDGFRB-210ENST00000522466 SNAPC4Q5SXM2 1469 aa15.09■□□□□ 0.01
PDGFRB-210ENST00000522466 CLASP1Q7Z460 1538 aa15.07■□□□□ 0
PDGFRB-210ENST00000522466 CHMP7Q8WUX9 453 aaPredicted RBP15.07■□□□□ 0
PDGFRB-210ENST00000522466 SOGA1O94964 1423 aa15.07■□□□□ 0
PDGFRB-210ENST00000522466 SYNJ1O43426 1573 aa15.04■□□□□ -0
PDGFRB-210ENST00000522466 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
PDGFRB-210ENST00000522466 GAPVD1Q14C86 1478 aa14.97□□□□□ -0.01
PDGFRB-210ENST00000522466 MAGI1Q96QZ7 1491 aaPredicted RBP14.96□□□□□ -0.01
PDGFRB-210ENST00000522466 GRIN2BQ13224 1484 aa14.95□□□□□ -0.02
PDGFRB-210ENST00000522466 SYNJ2O15056 1496 aa14.94□□□□□ -0.02
PDGFRB-210ENST00000522466 PBRM1Q86U86 1689 aa14.93□□□□□ -0.02
PDGFRB-210ENST00000522466 CUX1P39880 1505 aa14.92□□□□□ -0.02
PDGFRB-210ENST00000522466 WDR97A6NE52 1622 aa14.92□□□□□ -0.02
PDGFRB-210ENST00000522466 ERCC6L2Q5T890 1561 aa14.9□□□□□ -0.02
PDGFRB-210ENST00000522466 CEP170Q5SW79 1584 aa14.79□□□□□ -0.04
PDGFRB-210ENST00000522466 KIF13AQ9H1H9 1805 aa14.79□□□□□ -0.04
PDGFRB-210ENST00000522466 ABCA5Q8WWZ7 1642 aa14.78□□□□□ -0.04
PDGFRB-210ENST00000522466 GRIN2AQ12879 1464 aa14.76□□□□□ -0.05
PDGFRB-210ENST00000522466 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
PDGFRB-210ENST00000522466 ADAMTS12P58397 1594 aa14.72□□□□□ -0.05
PDGFRB-210ENST00000522466 NUP160Q12769 1436 aa14.71□□□□□ -0.05
PDGFRB-210ENST00000522466 SHROOM2Q13796 1616 aa14.7□□□□□ -0.06
PDGFRB-210ENST00000522466 FAM69CQ0P6D2 419 aa14.68□□□□□ -0.06
PDGFRB-210ENST00000522466 PRG4Q92954 1404 aaPredicted RBP14.66□□□□□ -0.06
PDGFRB-210ENST00000522466 FHAD1B1AJZ9 1412 aa14.64□□□□□ -0.07
PDGFRB-210ENST00000522466 KDM4FA0A1W2PPD8 638 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms