RNA–Protein interactions for RNA: ENST00000521605.1

MRPS28-208, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 2 BASIC

Gene MRPS28, Length 437 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-208ENST00000521605 NISCHQ9Y2I1 1504 aa26.72■■□□□ 1.87
MRPS28-208ENST00000521605 ABCC9O60706 1549 aa24.93■■□□□ 1.58
MRPS28-208ENST00000521605 CCDC180Q9P1Z9 1646 aa24.21■■□□□ 1.47
MRPS28-208ENST00000521605 DNAJC5BQ9UF47 199 aa23.9■■□□□ 1.42
MRPS28-208ENST00000521605 RB1CC1Q8TDY2 1594 aa23.38■■□□□ 1.33
MRPS28-208ENST00000521605 PABPN1Q86U42 306 aaKnown RBP eCLIP23.13■■□□□ 1.29
MRPS28-208ENST00000521605 NACADO15069 1562 aa23.04■■□□□ 1.28
MRPS28-208ENST00000521605 DCAF8L2P0C7V8 631 aa22.97■■□□□ 1.27
MRPS28-208ENST00000521605 UNC13AQ9UPW8 1703 aa22.87■■□□□ 1.25
MRPS28-208ENST00000521605 AEBP2Q6ZN18 517 aaPredicted RBP22.76■■□□□ 1.23
MRPS28-208ENST00000521605 BICRAQ9NZM4 1560 aa22.72■■□□□ 1.23
MRPS28-208ENST00000521605 CECR2Q9BXF3 1484 aa22.48■■□□□ 1.19
MRPS28-208ENST00000521605 MYO15BQ96JP2 1530 aa22.44■■□□□ 1.18
MRPS28-208ENST00000521605 CC2D2AQ9P2K1 1620 aa22.44■■□□□ 1.18
MRPS28-208ENST00000521605 DNAJC5Q9H3Z4 198 aa22.35■■□□□ 1.17
MRPS28-208ENST00000521605 SHROOM4Q9ULL8 1493 aa22.26■■□□□ 1.15
MRPS28-208ENST00000521605 EIF4G1Q04637 1599 aaKnown RBP22.23■■□□□ 1.15
MRPS28-208ENST00000521605 SCRIBQ14160 1630 aa22.14■■□□□ 1.14
MRPS28-208ENST00000521605 ZCCHC6Q5VYS8 1495 aaKnown RBP22.01■■□□□ 1.11
MRPS28-208ENST00000521605 DCAF1Q9Y4B6 1507 aa21.96■■□□□ 1.11
MRPS28-208ENST00000521605 CUX2O14529 1486 aa21.64■■□□□ 1.05
MRPS28-208ENST00000521605 ERCC6Q03468 1493 aa21.56■■□□□ 1.04
MRPS28-208ENST00000521605 NCAPD3P42695 1498 aa21.27■■□□□ 1
MRPS28-208ENST00000521605 CHIC1Q5VXU3 224 aa21.26■□□□□ 0.99
MRPS28-208ENST00000521605 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
MRPS28-208ENST00000521605 NESP48681 1621 aa21.23■□□□□ 0.99
MRPS28-208ENST00000521605 ATAD2BQ9ULI0 1458 aa21.15■□□□□ 0.98
MRPS28-208ENST00000521605 THOC2Q8NI27 1593 aaKnown RBP21.1■□□□□ 0.97
MRPS28-208ENST00000521605 HMGXB3Q12766 1538 aa21.06■□□□□ 0.96
MRPS28-208ENST00000521605 SMARCA2P51531 1590 aa21.05■□□□□ 0.96
MRPS28-208ENST00000521605 SMARCA4P51532 1647 aa20.99■□□□□ 0.95
MRPS28-208ENST00000521605 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
MRPS28-208ENST00000521605 KIF21AQ7Z4S6 1674 aa20.93■□□□□ 0.94
MRPS28-208ENST00000521605 LAMC3Q9Y6N6 1575 aa20.91■□□□□ 0.94
MRPS28-208ENST00000521605 PDS5BQ9NTI5 1447 aa20.82■□□□□ 0.92
MRPS28-208ENST00000521605 BAZ1AQ9NRL2 1556 aaPredicted RBP20.78■□□□□ 0.92
MRPS28-208ENST00000521605 PEG3Q9GZU2 1588 aa20.72■□□□□ 0.91
MRPS28-208ENST00000521605 MRC2Q9UBG0 1479 aa20.69■□□□□ 0.9
MRPS28-208ENST00000521605 WDR62O43379 1518 aa20.64■□□□□ 0.9
MRPS28-208ENST00000521605 CADPSQ9ULU8 1353 aa20.62■□□□□ 0.89
MRPS28-208ENST00000521605 MROH2BQ7Z745 1585 aa20.62■□□□□ 0.89
MRPS28-208ENST00000521605 OSCARQ8IYS5 282 aa20.58■□□□□ 0.89
MRPS28-208ENST00000521605 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
MRPS28-208ENST00000521605 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
MRPS28-208ENST00000521605 RIMBP3CA6NJZ7 1639 aa20.42■□□□□ 0.86
MRPS28-208ENST00000521605 RIMBP3BA6NNM3 1639 aa20.42■□□□□ 0.86
MRPS28-208ENST00000521605 RIMBP3Q9UFD9 1639 aa20.42■□□□□ 0.86
MRPS28-208ENST00000521605 WIZO95785 1651 aa20.36■□□□□ 0.85
MRPS28-208ENST00000521605 URB2Q14146 1524 aaKnown RBP20.29■□□□□ 0.84
MRPS28-208ENST00000521605 ARHGEF11O15085 1522 aa20.27■□□□□ 0.84
MRPS28-208ENST00000521605 CFTRP13569 1480 aa20.24■□□□□ 0.83
MRPS28-208ENST00000521605 TRHP20396 242 aaPredicted RBP20.22■□□□□ 0.83
MRPS28-208ENST00000521605 CYB5RLQ6IPT4 315 aa20.21■□□□□ 0.83
MRPS28-208ENST00000521605 ZNF608Q9ULD9 1512 aaPredicted RBP20.17■□□□□ 0.82
MRPS28-208ENST00000521605 IFT140Q96RY7 1462 aa20.09■□□□□ 0.81
MRPS28-208ENST00000521605 ARAP1Q96P48 1450 aa20.04■□□□□ 0.8
MRPS28-208ENST00000521605 EIF4G3O43432 1585 aaKnown RBP20.02■□□□□ 0.8
MRPS28-208ENST00000521605 TOP2AP11388 1531 aaKnown RBP20.02■□□□□ 0.79
MRPS28-208ENST00000521605 PRDM2Q13029 1718 aa20■□□□□ 0.79
MRPS28-208ENST00000521605 CHD1O14646 1710 aa19.99■□□□□ 0.79
MRPS28-208ENST00000521605 TOPBP1Q92547 1522 aa19.97■□□□□ 0.79
MRPS28-208ENST00000521605 FBLN2P98095 1184 aa19.96■□□□□ 0.79
MRPS28-208ENST00000521605 RSF1Q96T23 1441 aaPredicted RBP19.94■□□□□ 0.78
MRPS28-208ENST00000521605 AQRO60306 1485 aaKnown RBP eCLIP19.92■□□□□ 0.78
MRPS28-208ENST00000521605 DNMBPQ6XZF7 1577 aa19.83■□□□□ 0.76
MRPS28-208ENST00000521605 TARBP1Q13395 1621 aaKnown RBP19.82■□□□□ 0.76
MRPS28-208ENST00000521605 ABCC8Q09428 1581 aa19.82■□□□□ 0.76
MRPS28-208ENST00000521605 CCDC88BA6NC98 1476 aa19.81■□□□□ 0.76
MRPS28-208ENST00000521605 POLA1P09884 1462 aaPredicted RBP19.72■□□□□ 0.75
MRPS28-208ENST00000521605 CLASP1Q7Z460 1538 aa19.71■□□□□ 0.75
MRPS28-208ENST00000521605 RAD54L2Q9Y4B4 1467 aa19.7■□□□□ 0.74
MRPS28-208ENST00000521605 TDRD9Q8NDG6 1382 aaKnown RBP19.7■□□□□ 0.74
MRPS28-208ENST00000521605 SNAPC4Q5SXM2 1469 aa19.68■□□□□ 0.74
MRPS28-208ENST00000521605 CHMP7Q8WUX9 453 aaPredicted RBP19.65■□□□□ 0.74
MRPS28-208ENST00000521605 SYNJ1O43426 1573 aa19.65■□□□□ 0.74
MRPS28-208ENST00000521605 SOGA1O94964 1423 aa19.62■□□□□ 0.73
MRPS28-208ENST00000521605 GAPVD1Q14C86 1478 aa19.58■□□□□ 0.72
MRPS28-208ENST00000521605 MAGI1Q96QZ7 1491 aaPredicted RBP19.55■□□□□ 0.72
MRPS28-208ENST00000521605 FGD5Q6ZNL6 1462 aa19.53■□□□□ 0.72
MRPS28-208ENST00000521605 SENP3Q9H4L4 574 aaPredicted RBP19.51■□□□□ 0.71
MRPS28-208ENST00000521605 SYNJ2O15056 1496 aa19.51■□□□□ 0.71
MRPS28-208ENST00000521605 WDR97A6NE52 1622 aa19.51■□□□□ 0.71
MRPS28-208ENST00000521605 GRIN2BQ13224 1484 aa19.5■□□□□ 0.71
MRPS28-208ENST00000521605 ERCC6L2Q5T890 1561 aa19.42■□□□□ 0.7
MRPS28-208ENST00000521605 PBRM1Q86U86 1689 aa19.42■□□□□ 0.7
MRPS28-208ENST00000521605 CUX1P39880 1505 aa19.41■□□□□ 0.7
MRPS28-208ENST00000521605 KIF13AQ9H1H9 1805 aa19.3■□□□□ 0.68
MRPS28-208ENST00000521605 CEP170Q5SW79 1584 aa19.29■□□□□ 0.68
MRPS28-208ENST00000521605 ABCA5Q8WWZ7 1642 aa19.27■□□□□ 0.68
MRPS28-208ENST00000521605 GRIN2AQ12879 1464 aa19.27■□□□□ 0.67
MRPS28-208ENST00000521605 ILDR1Q86SU0 546 aaPredicted RBP19.25■□□□□ 0.67
MRPS28-208ENST00000521605 ABCA10Q8WWZ4 1543 aa19.22■□□□□ 0.67
MRPS28-208ENST00000521605 NUP160Q12769 1436 aa19.19■□□□□ 0.66
MRPS28-208ENST00000521605 ADAMTS12P58397 1594 aa19.19■□□□□ 0.66
MRPS28-208ENST00000521605 SHROOM2Q13796 1616 aa19.18■□□□□ 0.66
MRPS28-208ENST00000521605 PHF23Q9BUL5 403 aaPredicted RBP19.18■□□□□ 0.66
MRPS28-208ENST00000521605 FAM69CQ0P6D2 419 aa19.17■□□□□ 0.66
MRPS28-208ENST00000521605 KDM4FA0A1W2PPD8 638 aa19.16■□□□□ 0.66
MRPS28-208ENST00000521605 PRG4Q92954 1404 aaPredicted RBP19.11■□□□□ 0.65
MRPS28-208ENST00000521605 ABCC10Q5T3U5 1492 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms