RNA–Protein interactions for RNA: ENST00000520946.1

MRPS28-206, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 5

Gene MRPS28, Length 411 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-206ENST00000520946 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
MRPS28-206ENST00000520946 ABCC9O60706 1549 aa26.22■■□□□ 1.79
MRPS28-206ENST00000520946 CCDC180Q9P1Z9 1646 aa25.85■■□□□ 1.73
MRPS28-206ENST00000520946 RB1CC1Q8TDY2 1594 aa24.82■■□□□ 1.56
MRPS28-206ENST00000520946 DNAJC5BQ9UF47 199 aa24.74■■□□□ 1.55
MRPS28-206ENST00000520946 DCAF8L2P0C7V8 631 aa24.69■■□□□ 1.54
MRPS28-206ENST00000520946 NACADO15069 1562 aa24.56■■□□□ 1.52
MRPS28-206ENST00000520946 PABPN1Q86U42 306 aaKnown RBP eCLIP24.44■■□□□ 1.5
MRPS28-206ENST00000520946 UNC13AQ9UPW8 1703 aa24.1■■□□□ 1.45
MRPS28-206ENST00000520946 MYO15BQ96JP2 1530 aa24.07■■□□□ 1.44
MRPS28-206ENST00000520946 BICRAQ9NZM4 1560 aa23.96■■□□□ 1.43
MRPS28-206ENST00000520946 ZCCHC6Q5VYS8 1495 aaKnown RBP23.73■■□□□ 1.39
MRPS28-206ENST00000520946 SHROOM4Q9ULL8 1493 aa23.68■■□□□ 1.38
MRPS28-206ENST00000520946 DCAF1Q9Y4B6 1507 aa23.67■■□□□ 1.38
MRPS28-206ENST00000520946 CECR2Q9BXF3 1484 aa23.64■■□□□ 1.38
MRPS28-206ENST00000520946 SCRIBQ14160 1630 aa23.62■■□□□ 1.37
MRPS28-206ENST00000520946 CC2D2AQ9P2K1 1620 aa23.6■■□□□ 1.37
MRPS28-206ENST00000520946 EIF4G1Q04637 1599 aaKnown RBP23.48■■□□□ 1.35
MRPS28-206ENST00000520946 DNAJC5Q9H3Z4 198 aa22.98■■□□□ 1.27
MRPS28-206ENST00000520946 ERCC6Q03468 1493 aa22.74■■□□□ 1.23
MRPS28-206ENST00000520946 CUX2O14529 1486 aa22.66■■□□□ 1.22
MRPS28-206ENST00000520946 NCAPD3P42695 1498 aa22.66■■□□□ 1.22
MRPS28-206ENST00000520946 ATAD2BQ9ULI0 1458 aa22.57■■□□□ 1.2
MRPS28-206ENST00000520946 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
MRPS28-206ENST00000520946 SMARCA4P51532 1647 aa22.46■■□□□ 1.19
MRPS28-206ENST00000520946 HMGXB3Q12766 1538 aa22.45■■□□□ 1.18
MRPS28-206ENST00000520946 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
MRPS28-206ENST00000520946 NESP48681 1621 aa22.39■■□□□ 1.18
MRPS28-206ENST00000520946 BAZ1AQ9NRL2 1556 aaPredicted RBP22.36■■□□□ 1.17
MRPS28-206ENST00000520946 LAMC3Q9Y6N6 1575 aa22.21■■□□□ 1.15
MRPS28-206ENST00000520946 PDS5BQ9NTI5 1447 aa22.18■■□□□ 1.14
MRPS28-206ENST00000520946 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
MRPS28-206ENST00000520946 MROH2BQ7Z745 1585 aa22.14■■□□□ 1.13
MRPS28-206ENST00000520946 THOC2Q8NI27 1593 aaKnown RBP22.13■■□□□ 1.13
MRPS28-206ENST00000520946 KIF21AQ7Z4S6 1674 aa22.05■■□□□ 1.12
MRPS28-206ENST00000520946 CADPSQ9ULU8 1353 aa22.03■■□□□ 1.12
MRPS28-206ENST00000520946 TRIM41Q8WV44 630 aa22.02■■□□□ 1.12
MRPS28-206ENST00000520946 MRC2Q9UBG0 1479 aa21.95■■□□□ 1.1
MRPS28-206ENST00000520946 WIZO95785 1651 aa21.86■■□□□ 1.09
MRPS28-206ENST00000520946 CEP164Q9UPV0 1460 aa21.83■■□□□ 1.09
MRPS28-206ENST00000520946 WDR62O43379 1518 aa21.83■■□□□ 1.09
MRPS28-206ENST00000520946 FANCD2Q9BXW9 1451 aa21.77■■□□□ 1.08
MRPS28-206ENST00000520946 OSCARQ8IYS5 282 aa21.73■■□□□ 1.07
MRPS28-206ENST00000520946 CFTRP13569 1480 aa21.67■■□□□ 1.06
MRPS28-206ENST00000520946 RSF1Q96T23 1441 aaPredicted RBP21.62■■□□□ 1.05
MRPS28-206ENST00000520946 TOP2AP11388 1531 aaKnown RBP21.58■■□□□ 1.04
MRPS28-206ENST00000520946 URB2Q14146 1524 aaKnown RBP21.54■■□□□ 1.04
MRPS28-206ENST00000520946 IFT140Q96RY7 1462 aa21.39■■□□□ 1.02
MRPS28-206ENST00000520946 PRDM2Q13029 1718 aa21.36■■□□□ 1.01
MRPS28-206ENST00000520946 CCDC88BA6NC98 1476 aa21.36■■□□□ 1.01
MRPS28-206ENST00000520946 ZNF608Q9ULD9 1512 aaPredicted RBP21.34■■□□□ 1.01
MRPS28-206ENST00000520946 RIMBP3CA6NJZ7 1639 aa21.3■■□□□ 1
MRPS28-206ENST00000520946 RIMBP3BA6NNM3 1639 aa21.3■■□□□ 1
MRPS28-206ENST00000520946 RIMBP3Q9UFD9 1639 aa21.3■■□□□ 1
MRPS28-206ENST00000520946 ABCC8Q09428 1581 aa21.3■■□□□ 1
MRPS28-206ENST00000520946 TOPBP1Q92547 1522 aa21.29■■□□□ 1
MRPS28-206ENST00000520946 FBLN2P98095 1184 aa21.27■■□□□ 1
MRPS28-206ENST00000520946 CYB5RLQ6IPT4 315 aa21.25■□□□□ 0.99
MRPS28-206ENST00000520946 ARHGEF11O15085 1522 aa21.24■□□□□ 0.99
MRPS28-206ENST00000520946 DNMBPQ6XZF7 1577 aa21.19■□□□□ 0.98
MRPS28-206ENST00000520946 TRHP20396 242 aaPredicted RBP21.19■□□□□ 0.98
MRPS28-206ENST00000520946 EIF4G3O43432 1585 aaKnown RBP21.18■□□□□ 0.98
MRPS28-206ENST00000520946 AQRO60306 1485 aaKnown RBP eCLIP21.17■□□□□ 0.98
MRPS28-206ENST00000520946 CHD1O14646 1710 aa21.07■□□□□ 0.96
MRPS28-206ENST00000520946 POLA1P09884 1462 aaPredicted RBP21.06■□□□□ 0.96
MRPS28-206ENST00000520946 SOGA1O94964 1423 aa21.05■□□□□ 0.96
MRPS28-206ENST00000520946 TARBP1Q13395 1621 aaKnown RBP21.05■□□□□ 0.96
MRPS28-206ENST00000520946 TDRD9Q8NDG6 1382 aaKnown RBP21.04■□□□□ 0.96
MRPS28-206ENST00000520946 CHMP7Q8WUX9 453 aaPredicted RBP21.03■□□□□ 0.96
MRPS28-206ENST00000520946 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
MRPS28-206ENST00000520946 ARAP1Q96P48 1450 aa20.98■□□□□ 0.95
MRPS28-206ENST00000520946 SNAPC4Q5SXM2 1469 aa20.93■□□□□ 0.94
MRPS28-206ENST00000520946 FGD5Q6ZNL6 1462 aa20.92■□□□□ 0.94
MRPS28-206ENST00000520946 SYNJ1O43426 1573 aa20.87■□□□□ 0.93
MRPS28-206ENST00000520946 GRIN2BQ13224 1484 aa20.86■□□□□ 0.93
MRPS28-206ENST00000520946 MAGI1Q96QZ7 1491 aaPredicted RBP20.86■□□□□ 0.93
MRPS28-206ENST00000520946 WDR97A6NE52 1622 aa20.86■□□□□ 0.93
MRPS28-206ENST00000520946 CUX1P39880 1505 aa20.81■□□□□ 0.92
MRPS28-206ENST00000520946 AEBP2Q6ZN18 517 aaPredicted RBP20.8■□□□□ 0.92
MRPS28-206ENST00000520946 SYNJ2O15056 1496 aa20.8■□□□□ 0.92
MRPS28-206ENST00000520946 CLASP1Q7Z460 1538 aa20.78■□□□□ 0.92
MRPS28-206ENST00000520946 GAPVD1Q14C86 1478 aa20.76■□□□□ 0.91
MRPS28-206ENST00000520946 SUPT5HO00267 1087 aaKnown RBP20.71■□□□□ 0.91
MRPS28-206ENST00000520946 PBRM1Q86U86 1689 aa20.67■□□□□ 0.9
MRPS28-206ENST00000520946 ABCA10Q8WWZ4 1543 aa20.63■□□□□ 0.89
MRPS28-206ENST00000520946 WRNQ14191 1432 aaPredicted RBP eCLIP20.61■□□□□ 0.89
MRPS28-206ENST00000520946 ABCA5Q8WWZ7 1642 aa20.57■□□□□ 0.88
MRPS28-206ENST00000520946 GRIN2AQ12879 1464 aa20.56■□□□□ 0.88
MRPS28-206ENST00000520946 FHAD1B1AJZ9 1412 aa20.49■□□□□ 0.87
MRPS28-206ENST00000520946 ADAMTS12P58397 1594 aa20.46■□□□□ 0.87
MRPS28-206ENST00000520946 CEP170Q5SW79 1584 aa20.46■□□□□ 0.87
MRPS28-206ENST00000520946 NUP160Q12769 1436 aa20.46■□□□□ 0.87
MRPS28-206ENST00000520946 ERCC6L2Q5T890 1561 aa20.46■□□□□ 0.87
MRPS28-206ENST00000520946 NPM1P06748 294 aaKnown RBP eCLIP20.42■□□□□ 0.86
MRPS28-206ENST00000520946 TOP2BQ02880 1626 aa20.42■□□□□ 0.86
MRPS28-206ENST00000520946 JPH4Q96JJ6 628 aa20.4■□□□□ 0.86
MRPS28-206ENST00000520946 BIVM-ERCC5R4GMW8 1640 aa20.38■□□□□ 0.85
MRPS28-206ENST00000520946 ERICH3Q5RHP9 1530 aa20.38■□□□□ 0.85
MRPS28-206ENST00000520946 PRG4Q92954 1404 aaPredicted RBP20.38■□□□□ 0.85
MRPS28-206ENST00000520946 SHROOM2Q13796 1616 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms