RNA–Protein interactions for RNA: ENST00000519481.5

PVT1-208, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 542 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-208ENST00000519481 NISCHQ9Y2I1 1504 aa26.97■■□□□ 1.91
PVT1-208ENST00000519481 CCDC180Q9P1Z9 1646 aa24.16■■□□□ 1.46
PVT1-208ENST00000519481 ABCC9O60706 1549 aa24.14■■□□□ 1.45
PVT1-208ENST00000519481 RB1CC1Q8TDY2 1594 aa23.02■■□□□ 1.28
PVT1-208ENST00000519481 NACADO15069 1562 aa22.87■■□□□ 1.25
PVT1-208ENST00000519481 DCAF8L2P0C7V8 631 aa22.85■■□□□ 1.25
PVT1-208ENST00000519481 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
PVT1-208ENST00000519481 DNAJC5BQ9UF47 199 aa22.54■■□□□ 1.2
PVT1-208ENST00000519481 PABPN1Q86U42 306 aaKnown RBP eCLIP22.5■■□□□ 1.19
PVT1-208ENST00000519481 UNC13AQ9UPW8 1703 aa22.38■■□□□ 1.17
PVT1-208ENST00000519481 ZCCHC6Q5VYS8 1495 aaKnown RBP22.34■■□□□ 1.17
PVT1-208ENST00000519481 DCAF1Q9Y4B6 1507 aa22.29■■□□□ 1.16
PVT1-208ENST00000519481 BICRAQ9NZM4 1560 aa22.26■■□□□ 1.15
PVT1-208ENST00000519481 SHROOM4Q9ULL8 1493 aa22.06■■□□□ 1.12
PVT1-208ENST00000519481 SCRIBQ14160 1630 aa22.02■■□□□ 1.12
PVT1-208ENST00000519481 CC2D2AQ9P2K1 1620 aa21.78■■□□□ 1.08
PVT1-208ENST00000519481 EIF4G1Q04637 1599 aaKnown RBP21.75■■□□□ 1.07
PVT1-208ENST00000519481 CECR2Q9BXF3 1484 aa21.75■■□□□ 1.07
PVT1-208ENST00000519481 AEBP2Q6ZN18 517 aaPredicted RBP21.28■■□□□ 1
PVT1-208ENST00000519481 NCAPD3P42695 1498 aa21.11■□□□□ 0.97
PVT1-208ENST00000519481 ATAD2BQ9ULI0 1458 aa21.04■□□□□ 0.96
PVT1-208ENST00000519481 SMARCA2P51531 1590 aa21.02■□□□□ 0.95
PVT1-208ENST00000519481 SMARCA4P51532 1647 aa21.01■□□□□ 0.95
PVT1-208ENST00000519481 BAZ1AQ9NRL2 1556 aaPredicted RBP20.96■□□□□ 0.95
PVT1-208ENST00000519481 HMGXB3Q12766 1538 aa20.94■□□□□ 0.94
PVT1-208ENST00000519481 ERCC6Q03468 1493 aa20.89■□□□□ 0.94
PVT1-208ENST00000519481 BAZ1BQ9UIG0 1483 aaKnown RBP20.87■□□□□ 0.93
PVT1-208ENST00000519481 CUX2O14529 1486 aa20.81■□□□□ 0.92
PVT1-208ENST00000519481 PEG3Q9GZU2 1588 aa20.8■□□□□ 0.92
PVT1-208ENST00000519481 MROH2BQ7Z745 1585 aa20.76■□□□□ 0.91
PVT1-208ENST00000519481 DNAJC5Q9H3Z4 198 aa20.73■□□□□ 0.91
PVT1-208ENST00000519481 NESP48681 1621 aa20.71■□□□□ 0.91
PVT1-208ENST00000519481 LAMC3Q9Y6N6 1575 aa20.63■□□□□ 0.89
PVT1-208ENST00000519481 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
PVT1-208ENST00000519481 PDS5BQ9NTI5 1447 aa20.55■□□□□ 0.88
PVT1-208ENST00000519481 WIZO95785 1651 aa20.5■□□□□ 0.87
PVT1-208ENST00000519481 CADPSQ9ULU8 1353 aa20.49■□□□□ 0.87
PVT1-208ENST00000519481 THOC2Q8NI27 1593 aaKnown RBP20.48■□□□□ 0.87
PVT1-208ENST00000519481 KIF21AQ7Z4S6 1674 aa20.43■□□□□ 0.86
PVT1-208ENST00000519481 RSF1Q96T23 1441 aaPredicted RBP20.37■□□□□ 0.85
PVT1-208ENST00000519481 MRC2Q9UBG0 1479 aa20.33■□□□□ 0.85
PVT1-208ENST00000519481 TOP2AP11388 1531 aaKnown RBP20.28■□□□□ 0.84
PVT1-208ENST00000519481 CEP164Q9UPV0 1460 aa20.28■□□□□ 0.84
PVT1-208ENST00000519481 CFTRP13569 1480 aa20.24■□□□□ 0.83
PVT1-208ENST00000519481 FANCD2Q9BXW9 1451 aa20.24■□□□□ 0.83
PVT1-208ENST00000519481 WDR62O43379 1518 aa20.24■□□□□ 0.83
PVT1-208ENST00000519481 CCDC88BA6NC98 1476 aa20.05■□□□□ 0.8
PVT1-208ENST00000519481 URB2Q14146 1524 aaKnown RBP20.03■□□□□ 0.8
PVT1-208ENST00000519481 PRDM2Q13029 1718 aa19.99■□□□□ 0.79
PVT1-208ENST00000519481 OSCARQ8IYS5 282 aa19.91■□□□□ 0.78
PVT1-208ENST00000519481 TRIM41Q8WV44 630 aa19.89■□□□□ 0.77
PVT1-208ENST00000519481 ABCC8Q09428 1581 aa19.87■□□□□ 0.77
PVT1-208ENST00000519481 IFT140Q96RY7 1462 aa19.86■□□□□ 0.77
PVT1-208ENST00000519481 TOPBP1Q92547 1522 aa19.85■□□□□ 0.77
PVT1-208ENST00000519481 DNMBPQ6XZF7 1577 aa19.78■□□□□ 0.76
PVT1-208ENST00000519481 ZNF608Q9ULD9 1512 aaPredicted RBP19.77■□□□□ 0.76
PVT1-208ENST00000519481 EIF4G3O43432 1585 aaKnown RBP19.66■□□□□ 0.74
PVT1-208ENST00000519481 POLA1P09884 1462 aaPredicted RBP19.65■□□□□ 0.74
PVT1-208ENST00000519481 TARBP1Q13395 1621 aaKnown RBP19.63■□□□□ 0.73
PVT1-208ENST00000519481 AQRO60306 1485 aaKnown RBP eCLIP19.63■□□□□ 0.733e-7■■□□□ 11.6
PVT1-208ENST00000519481 SOGA1O94964 1423 aa19.6■□□□□ 0.73
PVT1-208ENST00000519481 SUPT5HO00267 1087 aaKnown RBP19.59■□□□□ 0.73
PVT1-208ENST00000519481 FBLN2P98095 1184 aa19.58■□□□□ 0.72
PVT1-208ENST00000519481 RAD54L2Q9Y4B4 1467 aa19.57■□□□□ 0.72
PVT1-208ENST00000519481 RIMBP3CA6NJZ7 1639 aa19.55■□□□□ 0.72
PVT1-208ENST00000519481 RIMBP3BA6NNM3 1639 aa19.55■□□□□ 0.72
PVT1-208ENST00000519481 RIMBP3Q9UFD9 1639 aa19.55■□□□□ 0.72
PVT1-208ENST00000519481 TDRD9Q8NDG6 1382 aaKnown RBP19.54■□□□□ 0.72
PVT1-208ENST00000519481 FGD5Q6ZNL6 1462 aa19.54■□□□□ 0.72
PVT1-208ENST00000519481 ARHGEF11O15085 1522 aa19.52■□□□□ 0.72
PVT1-208ENST00000519481 CUX1P39880 1505 aa19.51■□□□□ 0.71
PVT1-208ENST00000519481 CHD1O14646 1710 aa19.5■□□□□ 0.71
PVT1-208ENST00000519481 WDR97A6NE52 1622 aa19.49■□□□□ 0.71
PVT1-208ENST00000519481 SNAPC4Q5SXM2 1469 aa19.44■□□□□ 0.7
PVT1-208ENST00000519481 CHMP7Q8WUX9 453 aaPredicted RBP19.44■□□□□ 0.7
PVT1-208ENST00000519481 CYB5RLQ6IPT4 315 aa19.43■□□□□ 0.7
PVT1-208ENST00000519481 GRIN2BQ13224 1484 aa19.42■□□□□ 0.7
PVT1-208ENST00000519481 MAGI1Q96QZ7 1491 aaPredicted RBP19.41■□□□□ 0.7
PVT1-208ENST00000519481 GAPVD1Q14C86 1478 aa19.35■□□□□ 0.69
PVT1-208ENST00000519481 SYNJ1O43426 1573 aa19.34■□□□□ 0.69
PVT1-208ENST00000519481 SYNJ2O15056 1496 aa19.34■□□□□ 0.69
PVT1-208ENST00000519481 ABCA10Q8WWZ4 1543 aa19.32■□□□□ 0.68
PVT1-208ENST00000519481 ARAP1Q96P48 1450 aa19.32■□□□□ 0.68
PVT1-208ENST00000519481 WRNQ14191 1432 aaPredicted RBP eCLIP19.31■□□□□ 0.68
PVT1-208ENST00000519481 CLASP1Q7Z460 1538 aa19.29■□□□□ 0.68
PVT1-208ENST00000519481 PBRM1Q86U86 1689 aa19.28■□□□□ 0.68
PVT1-208ENST00000519481 ABCA5Q8WWZ7 1642 aa19.25■□□□□ 0.67
PVT1-208ENST00000519481 TRHP20396 242 aaPredicted RBP19.24■□□□□ 0.67
PVT1-208ENST00000519481 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
PVT1-208ENST00000519481 BIVM-ERCC5R4GMW8 1640 aa19.2■□□□□ 0.66
PVT1-208ENST00000519481 GRIN2AQ12879 1464 aa19.15■□□□□ 0.66
PVT1-208ENST00000519481 ADAMTS12P58397 1594 aa19.12■□□□□ 0.65
PVT1-208ENST00000519481 FHAD1B1AJZ9 1412 aa19.12■□□□□ 0.65
PVT1-208ENST00000519481 ERICH3Q5RHP9 1530 aa19.1■□□□□ 0.65
PVT1-208ENST00000519481 NUP160Q12769 1436 aa19.08■□□□□ 0.64
PVT1-208ENST00000519481 CEP170Q5SW79 1584 aa19.04■□□□□ 0.64
PVT1-208ENST00000519481 ERCC6L2Q5T890 1561 aa18.97■□□□□ 0.63
PVT1-208ENST00000519481 SHROOM2Q13796 1616 aa18.94■□□□□ 0.62
PVT1-208ENST00000519481 JPH4Q96JJ6 628 aa18.94■□□□□ 0.62
PVT1-208ENST00000519481 KIF27Q86VH2 1401 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms